Wall clock time and date at job start Mon Mar 30 2020 02:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46797 * 2 1 4 4 H 1.08996 * 109.47876 * 304.08878 * 3 2 1 5 5 C 1.50706 * 109.47174 * 184.08678 * 3 2 1 6 6 H 1.07996 * 120.00365 * 239.99941 * 5 3 2 7 7 C 1.37881 * 119.99440 * 59.99919 * 5 3 2 8 8 N 1.31512 * 120.00323 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99608 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47342 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46802 * 120.00535 * 9 7 5 12 12 H 1.48498 * 109.47238 * 240.00189 * 9 7 5 13 13 C 1.52999 * 109.47281 * 64.09076 * 3 2 1 14 14 H 1.09001 * 108.66683 * 302.19635 * 13 3 2 15 15 C 1.45864 * 108.79278 * 60.49905 * 13 3 2 16 16 C 1.54507 * 111.59077 * 182.21615 * 15 13 3 17 17 C 1.50466 * 108.85571 * 282.80671 * 16 15 13 18 18 C 1.54290 * 113.03315 * 92.15240 * 17 16 15 19 19 C 1.54064 * 112.28774 * 318.30564 * 18 17 16 20 20 N 1.44275 * 111.98580 * 318.91437 * 19 18 17 21 21 C 1.46897 * 111.00018 * 219.30929 * 20 19 18 22 22 H 1.09001 * 109.46956 * 54.42403 * 1 2 3 23 23 H 1.09005 * 109.46755 * 174.41783 * 1 2 3 24 24 H 1.09000 * 109.46939 * 294.41638 * 1 2 3 25 25 H 1.09003 * 109.46940 * 240.00320 * 2 1 3 26 26 H 1.08999 * 109.47075 * 120.00102 * 2 1 3 27 27 H 0.96993 * 119.99843 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.05994 * 302.75900 * 15 13 3 29 29 H 1.09003 * 109.05699 * 61.74658 * 15 13 3 30 30 H 1.09001 * 109.57449 * 42.62182 * 16 15 13 31 31 H 1.09010 * 109.57318 * 162.86914 * 16 15 13 32 32 H 1.08997 * 108.77189 * 213.07123 * 17 16 15 33 33 H 1.09001 * 108.76749 * 331.23898 * 17 16 15 34 34 H 1.09007 * 108.91693 * 79.02877 * 18 17 16 35 35 H 1.09000 * 108.91806 * 197.67299 * 18 17 16 36 36 H 1.09002 * 108.98188 * 198.27073 * 19 18 17 37 37 H 1.09004 * 108.98353 * 79.56002 * 19 18 17 38 38 H 1.08999 * 109.47525 * 291.07998 * 21 20 19 39 39 H 1.09006 * 109.47384 * 51.07863 * 21 20 19 40 40 H 1.09003 * 109.47362 * 171.07860 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6181 1.9771 -0.8510 5 6 3.5436 1.4438 -0.1013 6 1 4.1372 1.8925 0.6814 7 6 4.1614 0.8720 -1.1933 8 7 3.4386 0.3260 -2.1467 9 14 6.0252 0.8742 -1.3192 10 1 6.6011 1.5456 -0.1264 11 1 6.5184 -0.5249 -1.3856 12 1 6.4376 1.6032 -2.5454 13 6 1.6157 2.1334 1.2975 14 1 0.5294 2.0905 1.3765 15 6 2.1976 1.4139 2.4250 16 6 1.7640 2.0268 3.7754 17 6 2.5587 3.2812 4.0176 18 6 1.8553 4.5516 3.4962 19 6 1.1986 4.3327 2.1198 20 7 2.0335 3.5500 1.2413 21 6 1.9755 4.0618 -0.1344 22 1 -0.3633 0.5979 -0.8359 23 1 -0.3633 -1.0229 -0.1000 24 1 -0.3633 0.4248 0.9358 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8733 -0.0765 -2.9147 28 1 1.8762 0.3730 2.3871 29 1 3.2843 1.4536 2.3500 30 1 0.7015 2.2682 3.7425 31 1 1.9515 1.3128 4.5775 32 1 2.7271 3.3884 5.0892 33 1 3.5243 3.1860 3.5210 34 1 1.0877 4.8492 4.2107 35 1 2.5894 5.3530 3.4125 36 1 1.0099 5.3022 1.6587 37 1 0.2484 3.8169 2.2584 38 1 0.9867 3.8712 -0.5516 39 1 2.1679 5.1347 -0.1314 40 1 2.7288 3.5593 -0.7412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260679801.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:40 Heat of formation + Delta-G solvation = -21.967776 kcal Electronic energy + Delta-G solvation = -17313.657219 eV Core-core repulsion = 14934.279992 eV Total energy + Delta-G solvation = -2379.377228 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.73537 -36.68243 -35.13280 -33.83923 -32.18072 -29.03521 -28.60087 -25.85453 -24.97296 -24.16108 -22.31843 -20.33577 -20.14548 -17.98847 -17.03537 -16.50105 -16.14874 -15.58588 -15.30660 -14.75359 -14.61585 -14.23019 -13.96712 -13.79005 -13.22675 -13.13962 -13.06471 -12.91035 -12.70236 -12.41932 -12.13689 -11.98957 -11.84050 -11.70678 -11.40454 -11.20245 -11.16590 -10.90694 -10.57171 -10.54203 -10.20376 -8.88347 -7.95945 -6.02375 1.40871 1.45210 1.55216 2.51148 3.23360 3.36006 4.02425 4.09619 4.24354 4.45190 4.48125 4.52974 4.55865 4.63254 4.64922 4.66585 4.81779 4.87945 4.92354 4.97995 5.02794 5.11977 5.25341 5.31929 5.34746 5.41535 5.44735 5.54857 5.55857 5.61545 5.65970 5.79205 5.83848 6.10116 6.16655 6.49287 6.56928 6.73120 7.07394 7.61727 9.08382 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024973 B = 0.010726 C = 0.009473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.932634 B = 2609.775938 C = 2955.030818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 C 0.044 3.956 4 H 0.002 0.998 5 C -0.480 4.480 6 H 0.054 0.946 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.938 3.062 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.288 1.288 13 C 0.107 3.893 14 H 0.019 0.981 15 C -0.101 4.101 16 C -0.110 4.110 17 C -0.106 4.106 18 C -0.101 4.101 19 C 0.049 3.951 20 N -0.528 5.528 21 C 0.038 3.962 22 H 0.034 0.966 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.037 0.963 27 H 0.254 0.746 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.042 0.958 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.031 0.969 38 H 0.007 0.993 39 H 0.066 0.934 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 5.403 9.709 12.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.026 3.974 4 H 0.020 0.980 5 C -0.518 4.518 6 H 0.072 0.928 7 C -0.187 4.187 8 N -0.563 5.563 9 Si 0.766 3.234 10 H -0.195 1.195 11 H -0.214 1.214 12 H -0.214 1.214 13 C 0.000 4.000 14 H 0.037 0.963 15 C -0.139 4.139 16 C -0.148 4.148 17 C -0.144 4.144 18 C -0.140 4.140 19 C -0.080 4.080 20 N -0.251 5.251 21 C -0.110 4.110 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.026 0.974 39 H 0.085 0.915 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.406 5.371 9.710 11.940 hybrid contribution 0.289 -0.333 -1.047 1.137 sum -4.117 5.038 8.663 10.834 Atomic orbital electron populations 1.21750 0.97106 1.00361 1.00226 1.21578 0.93593 0.99807 1.00796 1.18997 0.94772 0.91997 0.91672 0.98006 1.21375 0.92438 1.33770 1.04224 0.92791 1.25578 1.00839 0.96154 0.96162 1.70019 1.35577 1.40464 1.10246 0.85808 0.82881 0.77135 0.77608 1.19529 1.21425 1.21431 1.20446 0.94680 0.87810 0.97045 0.96317 1.20600 1.01136 0.98271 0.93875 1.21346 0.99718 0.97202 0.96523 1.21144 0.99110 0.94299 0.99824 1.21895 0.99714 0.97408 0.94934 1.22036 0.94055 0.97296 0.94606 1.61495 1.53697 1.02418 1.07518 1.22365 0.99310 0.99052 0.90253 0.94731 0.93152 0.92926 0.92252 0.94398 0.93711 0.92608 0.92873 0.92331 0.91470 0.91664 0.93883 0.90672 0.92301 0.91719 0.95109 0.97419 0.91495 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.49 71.98 0.68 -4.61 16 2 C -0.12 -5.57 4.96 30.59 0.15 -5.41 16 3 C 0.04 2.12 1.05 -11.54 -0.01 2.11 16 4 H 0.00 0.10 6.06 -2.39 -0.01 0.09 16 5 C -0.48 -25.42 5.97 25.60 0.15 -25.27 16 6 H 0.05 2.94 6.57 -2.91 -0.02 2.92 16 7 C 0.01 0.52 5.29 84.66 0.45 0.96 16 8 N -0.92 -52.99 11.30 21.45 0.24 -52.74 16 9 Si 0.94 44.43 29.54 68.60 2.03 46.46 16 10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 C 0.11 4.31 1.22 42.55 0.05 4.36 16 14 H 0.02 0.75 5.60 -2.39 -0.01 0.74 16 15 C -0.10 -3.80 4.33 28.92 0.13 -3.68 16 16 C -0.11 -3.24 5.60 30.29 0.17 -3.07 16 17 C -0.11 -2.97 5.42 30.21 0.16 -2.81 16 18 C -0.10 -2.62 6.14 31.39 0.19 -2.43 16 19 C 0.05 1.48 5.17 87.15 0.45 1.93 16 20 N -0.53 -20.02 4.19 -912.36 -3.83 -23.85 16 21 C 0.04 1.50 8.00 127.69 1.02 2.52 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 24 H 0.05 1.83 6.76 -2.39 -0.02 1.81 16 25 H 0.06 3.20 5.97 -2.39 -0.01 3.18 16 26 H 0.04 1.72 6.12 -2.39 -0.01 1.71 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.06 2.13 5.96 -2.39 -0.01 2.11 16 29 H 0.05 2.28 5.82 -2.39 -0.01 2.27 16 30 H 0.06 1.63 7.15 -2.39 -0.02 1.61 16 31 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.04 1.43 7.38 -2.39 -0.02 1.42 16 34 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.06 1.78 7.37 -2.39 -0.02 1.76 16 37 H 0.03 0.93 6.51 -2.38 -0.02 0.91 16 38 H 0.01 0.29 7.66 -2.39 -0.02 0.27 16 39 H 0.07 2.23 7.80 -2.38 -0.02 2.21 16 40 H 0.06 3.00 5.66 -2.39 -0.01 2.99 16 Total: -1.00 -57.50 284.56 3.04 -54.46 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 1.00 Total: 11.06 kcal Atomic # 6 Polarization: -38.99 SS G_CDS: 3.60 Total: -35.39 kcal Atomic # 7 Polarization: -73.01 SS G_CDS: -3.58 Total: -76.59 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -57.50 3.04 -54.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260679801.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.493 kcal (2) G-P(sol) polarization free energy of solvation -57.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds