Wall clock time and date at job start Mon Mar 30 2020 02:38:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52992 * 109.46797 * 2 1
4 4 H 1.08996 * 109.47876 * 304.08878 * 3 2 1
5 5 C 1.50706 * 109.47174 * 184.08678 * 3 2 1
6 6 H 1.07996 * 120.00365 * 239.99941 * 5 3 2
7 7 C 1.37881 * 119.99440 * 59.99919 * 5 3 2
8 8 N 1.31512 * 120.00323 * 0.02562 * 7 5 3
9 9 Si 1.86801 * 119.99608 * 179.97438 * 7 5 3
10 10 H 1.48495 * 109.47342 * 0.02562 * 9 7 5
11 11 H 1.48501 * 109.46802 * 120.00535 * 9 7 5
12 12 H 1.48498 * 109.47238 * 240.00189 * 9 7 5
13 13 C 1.52999 * 109.47281 * 64.09076 * 3 2 1
14 14 H 1.09001 * 108.66683 * 302.19635 * 13 3 2
15 15 C 1.45864 * 108.79278 * 60.49905 * 13 3 2
16 16 C 1.54507 * 111.59077 * 182.21615 * 15 13 3
17 17 C 1.50466 * 108.85571 * 282.80671 * 16 15 13
18 18 C 1.54290 * 113.03315 * 92.15240 * 17 16 15
19 19 C 1.54064 * 112.28774 * 318.30564 * 18 17 16
20 20 N 1.44275 * 111.98580 * 318.91437 * 19 18 17
21 21 C 1.46897 * 111.00018 * 219.30929 * 20 19 18
22 22 H 1.09001 * 109.46956 * 54.42403 * 1 2 3
23 23 H 1.09005 * 109.46755 * 174.41783 * 1 2 3
24 24 H 1.09000 * 109.46939 * 294.41638 * 1 2 3
25 25 H 1.09003 * 109.46940 * 240.00320 * 2 1 3
26 26 H 1.08999 * 109.47075 * 120.00102 * 2 1 3
27 27 H 0.96993 * 119.99843 * 180.02562 * 8 7 5
28 28 H 1.09000 * 109.05994 * 302.75900 * 15 13 3
29 29 H 1.09003 * 109.05699 * 61.74658 * 15 13 3
30 30 H 1.09001 * 109.57449 * 42.62182 * 16 15 13
31 31 H 1.09010 * 109.57318 * 162.86914 * 16 15 13
32 32 H 1.08997 * 108.77189 * 213.07123 * 17 16 15
33 33 H 1.09001 * 108.76749 * 331.23898 * 17 16 15
34 34 H 1.09007 * 108.91693 * 79.02877 * 18 17 16
35 35 H 1.09000 * 108.91806 * 197.67299 * 18 17 16
36 36 H 1.09002 * 108.98188 * 198.27073 * 19 18 17
37 37 H 1.09004 * 108.98353 * 79.56002 * 19 18 17
38 38 H 1.08999 * 109.47525 * 291.07998 * 21 20 19
39 39 H 1.09006 * 109.47384 * 51.07863 * 21 20 19
40 40 H 1.09003 * 109.47362 * 171.07860 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6181 1.9771 -0.8510
5 6 3.5436 1.4438 -0.1013
6 1 4.1372 1.8925 0.6814
7 6 4.1614 0.8720 -1.1933
8 7 3.4386 0.3260 -2.1467
9 14 6.0252 0.8742 -1.3192
10 1 6.6011 1.5456 -0.1264
11 1 6.5184 -0.5249 -1.3856
12 1 6.4376 1.6032 -2.5454
13 6 1.6157 2.1334 1.2975
14 1 0.5294 2.0905 1.3765
15 6 2.1976 1.4139 2.4250
16 6 1.7640 2.0268 3.7754
17 6 2.5587 3.2812 4.0176
18 6 1.8553 4.5516 3.4962
19 6 1.1986 4.3327 2.1198
20 7 2.0335 3.5500 1.2413
21 6 1.9755 4.0618 -0.1344
22 1 -0.3633 0.5979 -0.8359
23 1 -0.3633 -1.0229 -0.1000
24 1 -0.3633 0.4248 0.9358
25 1 1.8934 -0.5138 -0.8900
26 1 1.8934 -0.5138 0.8900
27 1 3.8733 -0.0765 -2.9147
28 1 1.8762 0.3730 2.3871
29 1 3.2843 1.4536 2.3500
30 1 0.7015 2.2682 3.7425
31 1 1.9515 1.3128 4.5775
32 1 2.7271 3.3884 5.0892
33 1 3.5243 3.1860 3.5210
34 1 1.0877 4.8492 4.2107
35 1 2.5894 5.3530 3.4125
36 1 1.0099 5.3022 1.6587
37 1 0.2484 3.8169 2.2584
38 1 0.9867 3.8712 -0.5516
39 1 2.1679 5.1347 -0.1314
40 1 2.7288 3.5593 -0.7412
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260679801.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:40
Heat of formation + Delta-G solvation = -21.967776 kcal
Electronic energy + Delta-G solvation = -17313.657219 eV
Core-core repulsion = 14934.279992 eV
Total energy + Delta-G solvation = -2379.377228 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.73537 -36.68243 -35.13280 -33.83923 -32.18072 -29.03521 -28.60087 -25.85453
-24.97296 -24.16108 -22.31843 -20.33577 -20.14548 -17.98847 -17.03537 -16.50105
-16.14874 -15.58588 -15.30660 -14.75359 -14.61585 -14.23019 -13.96712 -13.79005
-13.22675 -13.13962 -13.06471 -12.91035 -12.70236 -12.41932 -12.13689 -11.98957
-11.84050 -11.70678 -11.40454 -11.20245 -11.16590 -10.90694 -10.57171 -10.54203
-10.20376 -8.88347 -7.95945 -6.02375 1.40871 1.45210 1.55216 2.51148
3.23360 3.36006 4.02425 4.09619 4.24354 4.45190 4.48125 4.52974
4.55865 4.63254 4.64922 4.66585 4.81779 4.87945 4.92354 4.97995
5.02794 5.11977 5.25341 5.31929 5.34746 5.41535 5.44735 5.54857
5.55857 5.61545 5.65970 5.79205 5.83848 6.10116 6.16655 6.49287
6.56928 6.73120 7.07394 7.61727 9.08382
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.024973 B = 0.010726 C = 0.009473
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1120.932634 B = 2609.775938 C = 2955.030818
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.119 4.119
3 C 0.044 3.956
4 H 0.002 0.998
5 C -0.480 4.480
6 H 0.054 0.946
7 C 0.009 3.991
8 N -0.921 5.921
9 Si 0.938 3.062
10 H -0.271 1.271
11 H -0.288 1.288
12 H -0.288 1.288
13 C 0.107 3.893
14 H 0.019 0.981
15 C -0.101 4.101
16 C -0.110 4.110
17 C -0.106 4.106
18 C -0.101 4.101
19 C 0.049 3.951
20 N -0.528 5.528
21 C 0.038 3.962
22 H 0.034 0.966
23 H 0.049 0.951
24 H 0.052 0.948
25 H 0.059 0.941
26 H 0.037 0.963
27 H 0.254 0.746
28 H 0.055 0.945
29 H 0.053 0.947
30 H 0.058 0.942
31 H 0.067 0.933
32 H 0.065 0.935
33 H 0.042 0.958
34 H 0.075 0.925
35 H 0.058 0.942
36 H 0.064 0.936
37 H 0.031 0.969
38 H 0.007 0.993
39 H 0.066 0.934
40 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.934 5.403 9.709 12.157
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C -0.158 4.158
3 C 0.026 3.974
4 H 0.020 0.980
5 C -0.518 4.518
6 H 0.072 0.928
7 C -0.187 4.187
8 N -0.563 5.563
9 Si 0.766 3.234
10 H -0.195 1.195
11 H -0.214 1.214
12 H -0.214 1.214
13 C 0.000 4.000
14 H 0.037 0.963
15 C -0.139 4.139
16 C -0.148 4.148
17 C -0.144 4.144
18 C -0.140 4.140
19 C -0.080 4.080
20 N -0.251 5.251
21 C -0.110 4.110
22 H 0.053 0.947
23 H 0.068 0.932
24 H 0.071 0.929
25 H 0.077 0.923
26 H 0.056 0.944
27 H 0.063 0.937
28 H 0.074 0.926
29 H 0.071 0.929
30 H 0.077 0.923
31 H 0.085 0.915
32 H 0.083 0.917
33 H 0.061 0.939
34 H 0.093 0.907
35 H 0.077 0.923
36 H 0.083 0.917
37 H 0.049 0.951
38 H 0.026 0.974
39 H 0.085 0.915
40 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -4.406 5.371 9.710 11.940
hybrid contribution 0.289 -0.333 -1.047 1.137
sum -4.117 5.038 8.663 10.834
Atomic orbital electron populations
1.21750 0.97106 1.00361 1.00226 1.21578 0.93593 0.99807 1.00796
1.18997 0.94772 0.91997 0.91672 0.98006 1.21375 0.92438 1.33770
1.04224 0.92791 1.25578 1.00839 0.96154 0.96162 1.70019 1.35577
1.40464 1.10246 0.85808 0.82881 0.77135 0.77608 1.19529 1.21425
1.21431 1.20446 0.94680 0.87810 0.97045 0.96317 1.20600 1.01136
0.98271 0.93875 1.21346 0.99718 0.97202 0.96523 1.21144 0.99110
0.94299 0.99824 1.21895 0.99714 0.97408 0.94934 1.22036 0.94055
0.97296 0.94606 1.61495 1.53697 1.02418 1.07518 1.22365 0.99310
0.99052 0.90253 0.94731 0.93152 0.92926 0.92252 0.94398 0.93711
0.92608 0.92873 0.92331 0.91470 0.91664 0.93883 0.90672 0.92301
0.91719 0.95109 0.97419 0.91495 0.91774
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.29 9.49 71.98 0.68 -4.61 16
2 C -0.12 -5.57 4.96 30.59 0.15 -5.41 16
3 C 0.04 2.12 1.05 -11.54 -0.01 2.11 16
4 H 0.00 0.10 6.06 -2.39 -0.01 0.09 16
5 C -0.48 -25.42 5.97 25.60 0.15 -25.27 16
6 H 0.05 2.94 6.57 -2.91 -0.02 2.92 16
7 C 0.01 0.52 5.29 84.66 0.45 0.96 16
8 N -0.92 -52.99 11.30 21.45 0.24 -52.74 16
9 Si 0.94 44.43 29.54 68.60 2.03 46.46 16
10 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16
11 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16
12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16
13 C 0.11 4.31 1.22 42.55 0.05 4.36 16
14 H 0.02 0.75 5.60 -2.39 -0.01 0.74 16
15 C -0.10 -3.80 4.33 28.92 0.13 -3.68 16
16 C -0.11 -3.24 5.60 30.29 0.17 -3.07 16
17 C -0.11 -2.97 5.42 30.21 0.16 -2.81 16
18 C -0.10 -2.62 6.14 31.39 0.19 -2.43 16
19 C 0.05 1.48 5.17 87.15 0.45 1.93 16
20 N -0.53 -20.02 4.19 -912.36 -3.83 -23.85 16
21 C 0.04 1.50 8.00 127.69 1.02 2.52 16
22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16
23 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16
24 H 0.05 1.83 6.76 -2.39 -0.02 1.81 16
25 H 0.06 3.20 5.97 -2.39 -0.01 3.18 16
26 H 0.04 1.72 6.12 -2.39 -0.01 1.71 16
27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16
28 H 0.06 2.13 5.96 -2.39 -0.01 2.11 16
29 H 0.05 2.28 5.82 -2.39 -0.01 2.27 16
30 H 0.06 1.63 7.15 -2.39 -0.02 1.61 16
31 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16
32 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16
33 H 0.04 1.43 7.38 -2.39 -0.02 1.42 16
34 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16
35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
36 H 0.06 1.78 7.37 -2.39 -0.02 1.76 16
37 H 0.03 0.93 6.51 -2.38 -0.02 0.91 16
38 H 0.01 0.29 7.66 -2.39 -0.02 0.27 16
39 H 0.07 2.23 7.80 -2.38 -0.02 2.21 16
40 H 0.06 3.00 5.66 -2.39 -0.01 2.99 16
Total: -1.00 -57.50 284.56 3.04 -54.46
By element:
Atomic # 1 Polarization: 10.07 SS G_CDS: 1.00 Total: 11.06 kcal
Atomic # 6 Polarization: -38.99 SS G_CDS: 3.60 Total: -35.39 kcal
Atomic # 7 Polarization: -73.01 SS G_CDS: -3.58 Total: -76.59 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal
Total: -57.50 3.04 -54.46 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260679801.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.493 kcal
(2) G-P(sol) polarization free energy of solvation -57.499 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.006 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) -21.968 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds