Wall clock time and date at job start Mon Mar 30 2020 02:38:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.53010 * 109.46958 * 2 1
4 4 H 1.08997 * 109.46981 * 178.89954 * 3 2 1
5 5 C 1.50701 * 109.47296 * 298.90564 * 3 2 1
6 6 H 1.07996 * 119.99481 * 114.47655 * 5 3 2
7 7 C 1.37871 * 119.99855 * 294.20223 * 5 3 2
8 8 N 1.31516 * 120.00143 * 351.55591 * 7 5 3
9 9 Si 1.86800 * 119.99948 * 171.55604 * 7 5 3
10 10 H 1.48496 * 109.47055 * 0.02562 * 9 7 5
11 11 H 1.48500 * 109.47182 * 119.99940 * 9 7 5
12 12 H 1.48502 * 109.47256 * 239.99723 * 9 7 5
13 13 C 1.53002 * 109.46934 * 58.90506 * 3 2 1
14 14 H 1.08998 * 109.57282 * 300.62431 * 13 3 2
15 15 C 1.50467 * 109.57273 * 60.99093 * 13 3 2
16 16 C 1.54289 * 113.04093 * 211.96373 * 15 13 3
17 17 C 1.54071 * 112.28451 * 318.30466 * 16 15 13
18 18 N 1.44274 * 111.97593 * 318.91108 * 17 16 15
19 19 C 1.46901 * 111.00076 * 219.31585 * 18 17 16
20 20 C 1.47800 * 109.45471 * 96.44789 * 18 17 16
21 21 C 1.45863 * 112.92119 * 276.72756 * 20 18 17
22 22 H 1.08998 * 109.47347 * 61.76312 * 1 2 3
23 23 H 1.09004 * 109.47167 * 181.76219 * 1 2 3
24 24 H 1.09005 * 109.47464 * 301.76176 * 1 2 3
25 25 H 1.09004 * 109.47018 * 240.00444 * 2 1 3
26 26 H 1.08998 * 109.47425 * 120.00119 * 2 1 3
27 27 H 0.97002 * 119.99894 * 179.97438 * 8 7 5
28 28 H 1.09005 * 108.77117 * 332.88592 * 15 13 3
29 29 H 1.08998 * 108.76671 * 91.04208 * 15 13 3
30 30 H 1.08997 * 108.92110 * 197.57835 * 16 15 13
31 31 H 1.08994 * 108.84606 * 78.97169 * 16 15 13
32 32 H 1.09002 * 108.97758 * 198.27474 * 17 16 15
33 33 H 1.09000 * 108.98138 * 79.55791 * 17 16 15
34 34 H 1.08999 * 109.47194 * 298.03043 * 19 18 17
35 35 H 1.09004 * 109.46968 * 58.02354 * 19 18 17
36 36 H 1.08997 * 109.46986 * 178.02394 * 19 18 17
37 37 H 1.08996 * 108.78928 * 155.83967 * 20 18 17
38 38 H 1.09001 * 108.70083 * 37.55219 * 20 18 17
39 39 H 1.09005 * 109.05822 * 300.78050 * 21 20 18
40 40 H 1.09003 * 109.05590 * 181.86929 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 3.1297 1.4427 0.0197
5 6 1.5599 2.1452 -1.2438
6 1 0.8659 2.9689 -1.1648
7 6 2.0110 1.7399 -2.4820
8 7 2.9810 0.8564 -2.5717
9 14 1.2443 2.4458 -4.0323
10 1 0.1809 3.4139 -3.6620
11 1 2.2882 3.1388 -4.8294
12 1 0.6549 1.3463 -4.8379
13 6 1.5075 2.1717 1.2353
14 1 0.4176 2.1629 1.2230
15 6 2.0055 1.4864 2.4788
16 6 1.0112 1.5730 3.6554
17 6 0.3659 2.9671 3.7735
18 7 1.3205 4.0249 3.5473
19 6 1.0920 5.1462 4.4683
20 6 1.2380 4.4699 2.1403
21 6 2.0135 3.6315 1.2329
22 1 -0.3634 0.4862 -0.9053
23 1 -0.3634 -1.0272 0.0316
24 1 -0.3634 0.5410 0.8738
25 1 1.8933 -0.5138 -0.8901
26 1 1.8933 -0.5138 0.8899
27 1 3.2981 0.5711 -3.4429
28 1 2.1887 0.4362 2.2510
29 1 2.9464 1.9467 2.7800
30 1 1.5396 1.3485 4.5819
31 1 0.2260 0.8316 3.5082
32 1 -0.0567 3.0786 4.7721
33 1 -0.4358 3.0500 3.0396
34 1 0.1013 5.5652 4.2919
35 1 1.1582 4.7910 5.4967
36 1 1.8468 5.9143 4.2999
37 1 1.6062 5.4936 2.0737
38 1 0.1936 4.4519 1.8287
39 1 3.0591 3.6463 1.5407
40 1 1.9356 4.0336 0.2227
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261292203.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:38:58
Heat of formation + Delta-G solvation = -31.026777 kcal
Electronic energy + Delta-G solvation = -16949.157562 eV
Core-core repulsion = 14569.387506 eV
Total energy + Delta-G solvation = -2379.770056 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-40.42782 -37.57946 -34.49280 -33.27514 -32.89952 -29.27609 -28.13448 -25.89382
-25.20486 -24.46416 -21.83858 -21.12831 -19.59937 -18.06751 -16.99524 -16.43874
-16.18771 -15.69363 -15.40573 -15.08078 -14.57905 -14.25007 -13.95730 -13.82202
-13.54376 -13.13231 -12.95023 -12.84472 -12.53790 -12.43628 -12.30852 -11.91220
-11.82024 -11.72365 -11.63794 -11.40716 -11.15933 -10.85127 -10.49303 -10.35021
-10.27823 -9.15292 -8.03464 -6.07494 1.39027 1.42607 1.51869 2.47703
3.10476 3.28603 3.95566 4.09293 4.23175 4.39942 4.46813 4.51885
4.56042 4.60118 4.69990 4.74949 4.78922 4.89607 4.91446 5.00137
5.02635 5.06364 5.11429 5.28397 5.36738 5.46008 5.48986 5.51171
5.62229 5.65092 5.71641 5.77062 5.81804 6.13600 6.18802 6.25180
6.38545 6.52890 7.04279 7.56774 9.05753
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.032996 B = 0.008517 C = 0.007485
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 848.383145 B = 3286.927171 C = 3740.160292
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.106 4.106
3 C 0.052 3.948
4 H -0.013 1.013
5 C -0.499 4.499
6 H 0.052 0.948
7 C 0.012 3.988
8 N -0.924 5.924
9 Si 0.936 3.064
10 H -0.265 1.265
11 H -0.287 1.287
12 H -0.285 1.285
13 C -0.058 4.058
14 H 0.054 0.946
15 C -0.104 4.104
16 C -0.102 4.102
17 C 0.057 3.943
18 N -0.547 5.547
19 C 0.028 3.972
20 C 0.068 3.932
21 C -0.104 4.104
22 H 0.037 0.963
23 H 0.042 0.958
24 H 0.055 0.945
25 H 0.032 0.968
26 H 0.037 0.963
27 H 0.256 0.744
28 H 0.047 0.953
29 H 0.043 0.957
30 H 0.065 0.935
31 H 0.062 0.938
32 H 0.078 0.922
33 H 0.031 0.969
34 H 0.028 0.972
35 H 0.078 0.922
36 H 0.069 0.931
37 H 0.069 0.931
38 H 0.029 0.971
39 H 0.043 0.957
40 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.758 4.843 12.492 14.583
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C -0.144 4.144
3 C 0.033 3.967
4 H 0.005 0.995
5 C -0.537 4.537
6 H 0.070 0.930
7 C -0.185 4.185
8 N -0.565 5.565
9 Si 0.762 3.238
10 H -0.189 1.189
11 H -0.213 1.213
12 H -0.211 1.211
13 C -0.077 4.077
14 H 0.072 0.928
15 C -0.141 4.141
16 C -0.140 4.140
17 C -0.072 4.072
18 N -0.272 5.272
19 C -0.120 4.120
20 C -0.059 4.059
21 C -0.142 4.142
22 H 0.056 0.944
23 H 0.061 0.939
24 H 0.073 0.927
25 H 0.051 0.949
26 H 0.056 0.944
27 H 0.065 0.935
28 H 0.066 0.934
29 H 0.062 0.938
30 H 0.084 0.916
31 H 0.081 0.919
32 H 0.096 0.904
33 H 0.049 0.951
34 H 0.046 0.954
35 H 0.097 0.903
36 H 0.088 0.912
37 H 0.088 0.912
38 H 0.048 0.952
39 H 0.062 0.938
40 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -5.186 4.588 12.466 14.260
hybrid contribution -0.686 0.414 -1.575 1.767
sum -5.872 5.002 10.891 13.346
Atomic orbital electron populations
1.21557 0.96169 0.99410 1.00924 1.21395 0.95817 0.99003 0.98221
1.18672 0.93722 0.91994 0.92275 0.99459 1.21412 1.25089 1.15484
0.91702 0.92997 1.25617 0.95258 0.96058 1.01608 1.70101 1.27782
1.34384 1.24192 0.85845 0.78722 0.78347 0.80839 1.18946 1.21313
1.21069 1.20773 0.98735 0.94034 0.94131 0.92788 1.21316 0.98803
0.99529 0.94492 1.21890 0.98377 0.95943 0.97821 1.21923 0.92665
0.91855 1.00741 1.61575 1.51793 1.10059 1.03726 1.22499 0.99860
0.93081 0.96575 1.20951 0.98476 0.98433 0.88026 1.20522 0.99055
0.96213 0.98364 0.94394 0.93882 0.92657 0.94917 0.94444 0.93537
0.93421 0.93790 0.91602 0.91892 0.90364 0.95065 0.95352 0.90281
0.91171 0.91249 0.95235 0.93829 0.92509
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.04 9.32 71.98 0.67 -4.37 16
2 C -0.11 -5.00 5.29 30.60 0.16 -4.84 16
3 C 0.05 2.57 1.51 -11.54 -0.02 2.55 16
4 H -0.01 -0.74 8.09 -2.39 -0.02 -0.76 16
5 C -0.50 -26.79 6.19 25.60 0.16 -26.63 16
6 H 0.05 2.76 7.09 -2.91 -0.02 2.74 16
7 C 0.01 0.67 5.21 84.65 0.44 1.11 16
8 N -0.92 -54.80 12.13 21.45 0.26 -54.54 16
9 Si 0.94 44.10 29.55 68.60 2.03 46.13 16
10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16
11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16
12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16
13 C -0.06 -2.34 1.03 -11.10 -0.01 -2.35 16
14 H 0.05 2.17 5.36 -2.39 -0.01 2.16 16
15 C -0.10 -3.68 4.85 30.21 0.15 -3.53 16
16 C -0.10 -2.84 6.15 31.39 0.19 -2.64 16
17 C 0.06 1.47 5.18 87.16 0.45 1.92 16
18 N -0.55 -14.98 4.48 -938.13 -4.21 -19.19 16
19 C 0.03 0.56 9.19 127.69 1.17 1.74 16
20 C 0.07 2.11 4.97 83.94 0.42 2.53 16
21 C -0.10 -3.98 4.82 28.92 0.14 -3.84 16
22 H 0.04 1.68 7.31 -2.39 -0.02 1.66 16
23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16
24 H 0.05 2.04 6.30 -2.38 -0.02 2.03 16
25 H 0.03 1.75 6.87 -2.38 -0.02 1.73 16
26 H 0.04 1.61 6.08 -2.39 -0.01 1.60 16
27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16
28 H 0.05 1.77 5.50 -2.38 -0.01 1.76 16
29 H 0.04 1.63 7.38 -2.39 -0.02 1.61 16
30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16
31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16
32 H 0.08 1.64 7.49 -2.39 -0.02 1.62 16
33 H 0.03 0.87 6.51 -2.39 -0.02 0.85 16
34 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16
35 H 0.08 1.38 8.01 -2.39 -0.02 1.36 16
36 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16
37 H 0.07 1.94 7.74 -2.39 -0.02 1.92 16
38 H 0.03 0.92 7.23 -2.39 -0.02 0.91 16
39 H 0.04 1.73 7.59 -2.38 -0.02 1.72 16
40 H 0.06 2.43 6.35 -2.39 -0.02 2.42 16
Total: -1.00 -59.87 291.01 2.99 -56.88
By element:
Atomic # 1 Polarization: 8.09 SS G_CDS: 0.98 Total: 9.08 kcal
Atomic # 6 Polarization: -42.28 SS G_CDS: 3.92 Total: -38.36 kcal
Atomic # 7 Polarization: -69.79 SS G_CDS: -3.95 Total: -73.73 kcal
Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal
Total: -59.87 2.99 -56.88 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261292203.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.855 kcal
(2) G-P(sol) polarization free energy of solvation -59.871 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.016 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.882 kcal
(6) G-S(sol) free energy of system = (1) + (5) -31.027 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds