Wall clock time and date at job start Mon Mar 30 2020 02:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53010 * 109.46958 * 2 1 4 4 H 1.08997 * 109.46981 * 178.89954 * 3 2 1 5 5 C 1.50701 * 109.47296 * 298.90564 * 3 2 1 6 6 H 1.07996 * 119.99481 * 114.47655 * 5 3 2 7 7 C 1.37871 * 119.99855 * 294.20223 * 5 3 2 8 8 N 1.31516 * 120.00143 * 351.55591 * 7 5 3 9 9 Si 1.86800 * 119.99948 * 171.55604 * 7 5 3 10 10 H 1.48496 * 109.47055 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47182 * 119.99940 * 9 7 5 12 12 H 1.48502 * 109.47256 * 239.99723 * 9 7 5 13 13 C 1.53002 * 109.46934 * 58.90506 * 3 2 1 14 14 H 1.08998 * 109.57282 * 300.62431 * 13 3 2 15 15 C 1.50467 * 109.57273 * 60.99093 * 13 3 2 16 16 C 1.54289 * 113.04093 * 211.96373 * 15 13 3 17 17 C 1.54071 * 112.28451 * 318.30466 * 16 15 13 18 18 N 1.44274 * 111.97593 * 318.91108 * 17 16 15 19 19 C 1.46901 * 111.00076 * 219.31585 * 18 17 16 20 20 C 1.47800 * 109.45471 * 96.44789 * 18 17 16 21 21 C 1.45863 * 112.92119 * 276.72756 * 20 18 17 22 22 H 1.08998 * 109.47347 * 61.76312 * 1 2 3 23 23 H 1.09004 * 109.47167 * 181.76219 * 1 2 3 24 24 H 1.09005 * 109.47464 * 301.76176 * 1 2 3 25 25 H 1.09004 * 109.47018 * 240.00444 * 2 1 3 26 26 H 1.08998 * 109.47425 * 120.00119 * 2 1 3 27 27 H 0.97002 * 119.99894 * 179.97438 * 8 7 5 28 28 H 1.09005 * 108.77117 * 332.88592 * 15 13 3 29 29 H 1.08998 * 108.76671 * 91.04208 * 15 13 3 30 30 H 1.08997 * 108.92110 * 197.57835 * 16 15 13 31 31 H 1.08994 * 108.84606 * 78.97169 * 16 15 13 32 32 H 1.09002 * 108.97758 * 198.27474 * 17 16 15 33 33 H 1.09000 * 108.98138 * 79.55791 * 17 16 15 34 34 H 1.08999 * 109.47194 * 298.03043 * 19 18 17 35 35 H 1.09004 * 109.46968 * 58.02354 * 19 18 17 36 36 H 1.08997 * 109.46986 * 178.02394 * 19 18 17 37 37 H 1.08996 * 108.78928 * 155.83967 * 20 18 17 38 38 H 1.09001 * 108.70083 * 37.55219 * 20 18 17 39 39 H 1.09005 * 109.05822 * 300.78050 * 21 20 18 40 40 H 1.09003 * 109.05590 * 181.86929 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1297 1.4427 0.0197 5 6 1.5599 2.1452 -1.2438 6 1 0.8659 2.9689 -1.1648 7 6 2.0110 1.7399 -2.4820 8 7 2.9810 0.8564 -2.5717 9 14 1.2443 2.4458 -4.0323 10 1 0.1809 3.4139 -3.6620 11 1 2.2882 3.1388 -4.8294 12 1 0.6549 1.3463 -4.8379 13 6 1.5075 2.1717 1.2353 14 1 0.4176 2.1629 1.2230 15 6 2.0055 1.4864 2.4788 16 6 1.0112 1.5730 3.6554 17 6 0.3659 2.9671 3.7735 18 7 1.3205 4.0249 3.5473 19 6 1.0920 5.1462 4.4683 20 6 1.2380 4.4699 2.1403 21 6 2.0135 3.6315 1.2329 22 1 -0.3634 0.4862 -0.9053 23 1 -0.3634 -1.0272 0.0316 24 1 -0.3634 0.5410 0.8738 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8899 27 1 3.2981 0.5711 -3.4429 28 1 2.1887 0.4362 2.2510 29 1 2.9464 1.9467 2.7800 30 1 1.5396 1.3485 4.5819 31 1 0.2260 0.8316 3.5082 32 1 -0.0567 3.0786 4.7721 33 1 -0.4358 3.0500 3.0396 34 1 0.1013 5.5652 4.2919 35 1 1.1582 4.7910 5.4967 36 1 1.8468 5.9143 4.2999 37 1 1.6062 5.4936 2.0737 38 1 0.1936 4.4519 1.8287 39 1 3.0591 3.6463 1.5407 40 1 1.9356 4.0336 0.2227 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292203.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:58 Heat of formation + Delta-G solvation = -31.026777 kcal Electronic energy + Delta-G solvation = -16949.157562 eV Core-core repulsion = 14569.387506 eV Total energy + Delta-G solvation = -2379.770056 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42782 -37.57946 -34.49280 -33.27514 -32.89952 -29.27609 -28.13448 -25.89382 -25.20486 -24.46416 -21.83858 -21.12831 -19.59937 -18.06751 -16.99524 -16.43874 -16.18771 -15.69363 -15.40573 -15.08078 -14.57905 -14.25007 -13.95730 -13.82202 -13.54376 -13.13231 -12.95023 -12.84472 -12.53790 -12.43628 -12.30852 -11.91220 -11.82024 -11.72365 -11.63794 -11.40716 -11.15933 -10.85127 -10.49303 -10.35021 -10.27823 -9.15292 -8.03464 -6.07494 1.39027 1.42607 1.51869 2.47703 3.10476 3.28603 3.95566 4.09293 4.23175 4.39942 4.46813 4.51885 4.56042 4.60118 4.69990 4.74949 4.78922 4.89607 4.91446 5.00137 5.02635 5.06364 5.11429 5.28397 5.36738 5.46008 5.48986 5.51171 5.62229 5.65092 5.71641 5.77062 5.81804 6.13600 6.18802 6.25180 6.38545 6.52890 7.04279 7.56774 9.05753 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032996 B = 0.008517 C = 0.007485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.383145 B = 3286.927171 C = 3740.160292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.106 4.106 3 C 0.052 3.948 4 H -0.013 1.013 5 C -0.499 4.499 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.924 5.924 9 Si 0.936 3.064 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.285 1.285 13 C -0.058 4.058 14 H 0.054 0.946 15 C -0.104 4.104 16 C -0.102 4.102 17 C 0.057 3.943 18 N -0.547 5.547 19 C 0.028 3.972 20 C 0.068 3.932 21 C -0.104 4.104 22 H 0.037 0.963 23 H 0.042 0.958 24 H 0.055 0.945 25 H 0.032 0.968 26 H 0.037 0.963 27 H 0.256 0.744 28 H 0.047 0.953 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.031 0.969 34 H 0.028 0.972 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.029 0.971 39 H 0.043 0.957 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 4.843 12.492 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.144 4.144 3 C 0.033 3.967 4 H 0.005 0.995 5 C -0.537 4.537 6 H 0.070 0.930 7 C -0.185 4.185 8 N -0.565 5.565 9 Si 0.762 3.238 10 H -0.189 1.189 11 H -0.213 1.213 12 H -0.211 1.211 13 C -0.077 4.077 14 H 0.072 0.928 15 C -0.141 4.141 16 C -0.140 4.140 17 C -0.072 4.072 18 N -0.272 5.272 19 C -0.120 4.120 20 C -0.059 4.059 21 C -0.142 4.142 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.049 0.951 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.186 4.588 12.466 14.260 hybrid contribution -0.686 0.414 -1.575 1.767 sum -5.872 5.002 10.891 13.346 Atomic orbital electron populations 1.21557 0.96169 0.99410 1.00924 1.21395 0.95817 0.99003 0.98221 1.18672 0.93722 0.91994 0.92275 0.99459 1.21412 1.25089 1.15484 0.91702 0.92997 1.25617 0.95258 0.96058 1.01608 1.70101 1.27782 1.34384 1.24192 0.85845 0.78722 0.78347 0.80839 1.18946 1.21313 1.21069 1.20773 0.98735 0.94034 0.94131 0.92788 1.21316 0.98803 0.99529 0.94492 1.21890 0.98377 0.95943 0.97821 1.21923 0.92665 0.91855 1.00741 1.61575 1.51793 1.10059 1.03726 1.22499 0.99860 0.93081 0.96575 1.20951 0.98476 0.98433 0.88026 1.20522 0.99055 0.96213 0.98364 0.94394 0.93882 0.92657 0.94917 0.94444 0.93537 0.93421 0.93790 0.91602 0.91892 0.90364 0.95065 0.95352 0.90281 0.91171 0.91249 0.95235 0.93829 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.32 71.98 0.67 -4.37 16 2 C -0.11 -5.00 5.29 30.60 0.16 -4.84 16 3 C 0.05 2.57 1.51 -11.54 -0.02 2.55 16 4 H -0.01 -0.74 8.09 -2.39 -0.02 -0.76 16 5 C -0.50 -26.79 6.19 25.60 0.16 -26.63 16 6 H 0.05 2.76 7.09 -2.91 -0.02 2.74 16 7 C 0.01 0.67 5.21 84.65 0.44 1.11 16 8 N -0.92 -54.80 12.13 21.45 0.26 -54.54 16 9 Si 0.94 44.10 29.55 68.60 2.03 46.13 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 13 C -0.06 -2.34 1.03 -11.10 -0.01 -2.35 16 14 H 0.05 2.17 5.36 -2.39 -0.01 2.16 16 15 C -0.10 -3.68 4.85 30.21 0.15 -3.53 16 16 C -0.10 -2.84 6.15 31.39 0.19 -2.64 16 17 C 0.06 1.47 5.18 87.16 0.45 1.92 16 18 N -0.55 -14.98 4.48 -938.13 -4.21 -19.19 16 19 C 0.03 0.56 9.19 127.69 1.17 1.74 16 20 C 0.07 2.11 4.97 83.94 0.42 2.53 16 21 C -0.10 -3.98 4.82 28.92 0.14 -3.84 16 22 H 0.04 1.68 7.31 -2.39 -0.02 1.66 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 2.04 6.30 -2.38 -0.02 2.03 16 25 H 0.03 1.75 6.87 -2.38 -0.02 1.73 16 26 H 0.04 1.61 6.08 -2.39 -0.01 1.60 16 27 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.05 1.77 5.50 -2.38 -0.01 1.76 16 29 H 0.04 1.63 7.38 -2.39 -0.02 1.61 16 30 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.64 7.49 -2.39 -0.02 1.62 16 33 H 0.03 0.87 6.51 -2.39 -0.02 0.85 16 34 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 1.38 8.01 -2.39 -0.02 1.36 16 36 H 0.07 1.36 8.05 -2.39 -0.02 1.34 16 37 H 0.07 1.94 7.74 -2.39 -0.02 1.92 16 38 H 0.03 0.92 7.23 -2.39 -0.02 0.91 16 39 H 0.04 1.73 7.59 -2.38 -0.02 1.72 16 40 H 0.06 2.43 6.35 -2.39 -0.02 2.42 16 Total: -1.00 -59.87 291.01 2.99 -56.88 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: 0.98 Total: 9.08 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 3.92 Total: -38.36 kcal Atomic # 7 Polarization: -69.79 SS G_CDS: -3.95 Total: -73.73 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -59.87 2.99 -56.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292203.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.855 kcal (2) G-P(sol) polarization free energy of solvation -59.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds