Wall clock time and date at job start Mon Mar 30 2020 02:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47191 * 2 1 4 4 H 1.09000 * 109.47081 * 179.15939 * 3 2 1 5 5 C 1.50696 * 109.47094 * 59.15899 * 3 2 1 6 6 H 1.07997 * 119.99921 * 240.00108 * 5 3 2 7 7 C 1.37873 * 119.99828 * 60.00000 * 5 3 2 8 8 N 1.31518 * 120.00342 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99842 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47298 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47048 * 120.00120 * 9 7 5 12 12 H 1.48506 * 109.47365 * 239.99934 * 9 7 5 13 13 C 1.53004 * 109.47134 * 299.15710 * 3 2 1 14 14 H 1.08998 * 108.82333 * 65.73693 * 13 3 2 15 15 C 1.54167 * 108.77223 * 307.27691 * 13 3 2 16 16 C 1.53818 * 111.96831 * 197.73435 * 15 13 3 17 17 C 1.50818 * 111.62451 * 319.04589 * 16 15 13 18 18 N 1.47633 * 108.05528 * 95.05623 * 17 16 15 19 19 C 1.46898 * 111.00280 * 150.34776 * 18 17 16 20 20 C 1.39779 * 114.75726 * 277.20144 * 18 17 16 21 21 C 1.50746 * 108.85377 * 184.24043 * 13 3 2 22 22 H 1.09003 * 109.46645 * 303.84376 * 1 2 3 23 23 H 1.08998 * 109.47616 * 63.84211 * 1 2 3 24 24 H 1.09002 * 109.47432 * 183.84658 * 1 2 3 25 25 H 1.09003 * 109.46690 * 240.00260 * 2 1 3 26 26 H 1.09004 * 109.47739 * 120.00263 * 2 1 3 27 27 H 0.96998 * 120.00063 * 180.02562 * 8 7 5 28 28 H 1.09003 * 108.98277 * 318.37772 * 15 13 3 29 29 H 1.09007 * 108.98648 * 77.18192 * 15 13 3 30 30 H 1.08999 * 109.05101 * 79.59696 * 16 15 13 31 31 H 1.09001 * 109.05237 * 198.55979 * 16 15 13 32 32 H 1.08995 * 109.74733 * 335.41488 * 17 16 15 33 33 H 1.08999 * 109.74286 * 214.69039 * 17 16 15 34 34 H 1.08999 * 109.47192 * 188.89016 * 19 18 17 35 35 H 1.08997 * 109.47047 * 68.89140 * 19 18 17 36 36 H 1.08997 * 109.46712 * 308.89203 * 19 18 17 37 37 H 1.08998 * 109.02102 * 182.86134 * 20 18 17 38 38 H 1.08999 * 109.02007 * 301.68513 * 20 18 17 39 39 H 1.09001 * 109.54534 * 93.86074 * 21 13 3 40 40 H 1.08999 * 109.54579 * 333.58708 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0151 5 6 1.5207 2.1589 1.2199 6 1 0.9013 3.0364 1.1079 7 6 1.8364 1.6939 2.4789 8 7 2.5912 0.6256 2.6153 9 14 1.1933 2.5824 3.9910 10 1 0.3740 3.7470 3.5698 11 1 0.3570 1.6534 4.7926 12 1 2.3374 3.0527 4.8128 13 6 1.5474 2.1576 -1.2597 14 1 0.4616 2.2419 -1.2145 15 6 1.9307 1.3134 -2.4914 16 6 1.8753 2.1339 -3.7913 17 6 0.6750 3.0467 -3.8216 18 7 1.0982 4.3753 -3.3366 19 6 0.2950 5.4406 -3.9514 20 6 1.1268 4.5089 -1.9455 21 6 2.1423 3.5422 -1.2981 22 1 -0.3633 0.5724 0.8536 23 1 -0.3634 0.4530 -0.9224 24 1 -0.3634 -1.0253 0.0689 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 2.8130 0.2983 3.5010 28 1 2.9421 0.9295 -2.3574 29 1 1.2410 0.4734 -2.5743 30 1 2.7812 2.7347 -3.8718 31 1 1.8242 1.4524 -4.6404 32 1 -0.1060 2.6497 -3.1733 33 1 0.3009 3.1292 -4.8421 34 1 0.7258 6.4103 -3.7021 35 1 -0.7264 5.3891 -3.5743 36 1 0.2896 5.3128 -5.0338 37 1 1.4003 5.5332 -1.6925 38 1 0.1337 4.2992 -1.5481 39 1 3.0595 3.5288 -1.8869 40 1 2.3638 3.8721 -0.2831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261292204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:01 Heat of formation + Delta-G solvation = -17.307308 kcal Electronic energy + Delta-G solvation = -16968.929344 eV Core-core repulsion = 14589.754209 eV Total energy + Delta-G solvation = -2379.175135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17448 -36.08207 -33.04015 -31.60553 -30.91083 -27.59240 -26.53466 -24.29323 -24.09929 -22.63010 -20.28460 -19.91124 -17.75899 -16.06636 -15.60842 -15.04001 -14.64639 -14.50599 -13.94622 -13.44179 -12.98226 -12.75548 -12.34763 -12.26194 -11.94412 -11.83247 -11.35384 -11.07103 -10.90379 -10.85098 -10.61243 -10.45867 -10.32518 -10.16706 -9.93258 -9.77779 -9.50538 -9.17818 -8.70431 -8.52827 -8.21149 -7.88894 -5.90569 -3.94428 3.31831 3.40607 3.43650 4.28247 4.48771 5.25924 5.28525 5.40161 5.44221 5.59377 5.68263 5.71380 5.84067 5.92802 5.97532 6.08490 6.14412 6.27600 6.45477 6.49605 6.52274 6.57573 6.61597 6.75971 6.82611 6.92557 7.07545 7.14082 7.26417 7.36400 7.43782 7.58089 7.66293 7.78307 7.85261 8.06208 8.26703 8.56630 9.08626 9.68306 11.15060 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.008802 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.641670 B = 3180.321303 C = 3708.986556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 C 0.052 3.948 4 H 0.023 0.977 5 C -0.498 4.498 6 H 0.054 0.946 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.881 3.119 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.286 1.286 13 C -0.077 4.077 14 H 0.052 0.948 15 C -0.112 4.112 16 C -0.117 4.117 17 C 0.068 3.932 18 N -0.557 5.557 19 C 0.031 3.969 20 C 0.073 3.927 21 C -0.105 4.105 22 H 0.060 0.940 23 H 0.029 0.971 24 H 0.018 0.982 25 H 0.015 0.985 26 H 0.085 0.915 27 H 0.257 0.743 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.043 0.957 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.019 0.981 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.017 0.983 39 H 0.056 0.944 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.180 4.352 -10.684 11.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.154 4.154 3 C 0.034 3.966 4 H 0.041 0.959 5 C -0.536 4.536 6 H 0.072 0.928 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.710 3.290 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.212 1.212 13 C -0.095 4.095 14 H 0.070 0.930 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.059 4.059 18 N -0.282 5.282 19 C -0.117 4.117 20 C -0.056 4.056 21 C -0.143 4.143 22 H 0.079 0.921 23 H 0.048 0.952 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.035 0.965 39 H 0.075 0.925 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.658 4.288 -10.661 11.794 hybrid contribution -1.219 0.313 1.227 1.758 sum -3.877 4.600 -9.434 11.189 Atomic orbital electron populations 1.21640 0.98479 0.98041 1.00567 1.21546 0.93952 0.99900 1.00000 1.18805 0.95788 0.91435 0.90562 0.95931 1.21183 1.30622 1.11334 0.90502 0.92814 1.24928 0.95327 0.95033 0.98693 1.69891 1.37531 1.23133 1.22437 0.86705 0.78707 0.79855 0.83748 1.19912 1.21263 1.21202 1.21064 0.99336 0.94044 0.95105 0.92974 1.22047 1.01076 0.97942 0.93854 1.21435 0.98809 0.97535 0.97728 1.21787 0.97085 0.88343 0.98645 1.58943 1.55499 1.03471 1.10282 1.22326 0.95115 0.95096 0.99177 1.21035 0.98456 0.99873 0.86273 1.21541 0.97138 0.94709 1.00871 0.92102 0.95213 0.96246 0.96595 0.89627 0.93314 0.92684 0.92987 0.91142 0.93071 0.93858 0.92033 0.91903 0.96208 0.92002 0.92234 0.96506 0.92484 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.26 37.16 0.34 -2.48 16 2 C -0.12 -2.74 5.01 -26.73 -0.13 -2.87 16 3 C 0.05 1.26 1.53 -91.77 -0.14 1.12 16 4 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 5 C -0.50 -13.12 6.02 -34.44 -0.21 -13.32 16 6 H 0.05 1.42 7.39 -52.49 -0.39 1.03 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -25.31 11.33 55.43 0.63 -24.68 16 9 Si 0.88 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C -0.08 -1.55 0.79 -91.14 -0.07 -1.62 16 14 H 0.05 1.10 5.24 -51.93 -0.27 0.83 16 15 C -0.11 -1.97 4.08 -25.70 -0.10 -2.08 16 16 C -0.12 -1.76 5.41 -27.40 -0.15 -1.91 16 17 C 0.07 0.99 5.37 -4.52 -0.02 0.97 16 18 N -0.56 -8.39 4.19 -248.33 -1.04 -9.43 16 19 C 0.03 0.38 9.46 60.06 0.57 0.94 16 20 C 0.07 1.22 4.93 -6.74 -0.03 1.19 16 21 C -0.10 -2.00 4.94 -27.11 -0.13 -2.13 16 22 H 0.06 1.44 7.06 -51.93 -0.37 1.07 16 23 H 0.03 0.59 6.42 -51.93 -0.33 0.26 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.02 0.34 6.59 -51.93 -0.34 0.00 16 26 H 0.09 2.29 6.09 -51.93 -0.32 1.97 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.05 1.01 7.97 -51.93 -0.41 0.59 16 29 H 0.05 0.92 6.96 -51.93 -0.36 0.55 16 30 H 0.07 1.10 7.26 -51.93 -0.38 0.73 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.69 6.66 -51.93 -0.35 0.34 16 33 H 0.06 0.77 7.62 -51.93 -0.40 0.37 16 34 H 0.06 0.71 8.05 -51.93 -0.42 0.30 16 35 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 0.66 7.83 -51.93 -0.41 0.25 16 37 H 0.06 0.94 7.93 -51.93 -0.41 0.53 16 38 H 0.02 0.30 7.54 -51.93 -0.39 -0.09 16 39 H 0.06 1.07 7.11 -51.93 -0.37 0.70 16 40 H 0.08 1.79 6.54 -51.93 -0.34 1.46 16 LS Contribution 289.61 15.07 4.36 4.36 Total: -1.00 -27.21 289.61 -8.32 -35.53 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.07 Total: -1.36 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: -0.18 Total: -20.63 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: -0.41 Total: -34.11 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.21 -8.32 -35.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.224 kcal (2) G-P(sol) polarization free energy of solvation -27.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds