Wall clock time and date at job start Mon Mar 30 2020 02:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47191 * 2 1 4 4 H 1.09000 * 109.47081 * 179.15939 * 3 2 1 5 5 C 1.50696 * 109.47094 * 59.15899 * 3 2 1 6 6 H 1.07997 * 119.99921 * 240.00108 * 5 3 2 7 7 C 1.37873 * 119.99828 * 60.00000 * 5 3 2 8 8 N 1.31518 * 120.00342 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99842 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47298 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47048 * 120.00120 * 9 7 5 12 12 H 1.48506 * 109.47365 * 239.99934 * 9 7 5 13 13 C 1.53004 * 109.47134 * 299.15710 * 3 2 1 14 14 H 1.08998 * 108.82333 * 65.73693 * 13 3 2 15 15 C 1.54167 * 108.77223 * 307.27691 * 13 3 2 16 16 C 1.53818 * 111.96831 * 197.73435 * 15 13 3 17 17 C 1.50818 * 111.62451 * 319.04589 * 16 15 13 18 18 N 1.47633 * 108.05528 * 95.05623 * 17 16 15 19 19 C 1.46898 * 111.00280 * 150.34776 * 18 17 16 20 20 C 1.39779 * 114.75726 * 277.20144 * 18 17 16 21 21 C 1.50746 * 108.85377 * 184.24043 * 13 3 2 22 22 H 1.09003 * 109.46645 * 303.84376 * 1 2 3 23 23 H 1.08998 * 109.47616 * 63.84211 * 1 2 3 24 24 H 1.09002 * 109.47432 * 183.84658 * 1 2 3 25 25 H 1.09003 * 109.46690 * 240.00260 * 2 1 3 26 26 H 1.09004 * 109.47739 * 120.00263 * 2 1 3 27 27 H 0.96998 * 120.00063 * 180.02562 * 8 7 5 28 28 H 1.09003 * 108.98277 * 318.37772 * 15 13 3 29 29 H 1.09007 * 108.98648 * 77.18192 * 15 13 3 30 30 H 1.08999 * 109.05101 * 79.59696 * 16 15 13 31 31 H 1.09001 * 109.05237 * 198.55979 * 16 15 13 32 32 H 1.08995 * 109.74733 * 335.41488 * 17 16 15 33 33 H 1.08999 * 109.74286 * 214.69039 * 17 16 15 34 34 H 1.08999 * 109.47192 * 188.89016 * 19 18 17 35 35 H 1.08997 * 109.47047 * 68.89140 * 19 18 17 36 36 H 1.08997 * 109.46712 * 308.89203 * 19 18 17 37 37 H 1.08998 * 109.02102 * 182.86134 * 20 18 17 38 38 H 1.08999 * 109.02007 * 301.68513 * 20 18 17 39 39 H 1.09001 * 109.54534 * 93.86074 * 21 13 3 40 40 H 1.08999 * 109.54579 * 333.58708 * 21 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0151 5 6 1.5207 2.1589 1.2199 6 1 0.9013 3.0364 1.1079 7 6 1.8364 1.6939 2.4789 8 7 2.5912 0.6256 2.6153 9 14 1.1933 2.5824 3.9910 10 1 0.3740 3.7470 3.5698 11 1 0.3570 1.6534 4.7926 12 1 2.3374 3.0527 4.8128 13 6 1.5474 2.1576 -1.2597 14 1 0.4616 2.2419 -1.2145 15 6 1.9307 1.3134 -2.4914 16 6 1.8753 2.1339 -3.7913 17 6 0.6750 3.0467 -3.8216 18 7 1.0982 4.3753 -3.3366 19 6 0.2950 5.4406 -3.9514 20 6 1.1268 4.5089 -1.9455 21 6 2.1423 3.5422 -1.2981 22 1 -0.3633 0.5724 0.8536 23 1 -0.3634 0.4530 -0.9224 24 1 -0.3634 -1.0253 0.0689 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8900 27 1 2.8130 0.2983 3.5010 28 1 2.9421 0.9295 -2.3574 29 1 1.2410 0.4734 -2.5743 30 1 2.7812 2.7347 -3.8718 31 1 1.8242 1.4524 -4.6404 32 1 -0.1060 2.6497 -3.1733 33 1 0.3009 3.1292 -4.8421 34 1 0.7258 6.4103 -3.7021 35 1 -0.7264 5.3891 -3.5743 36 1 0.2896 5.3128 -5.0338 37 1 1.4003 5.5332 -1.6925 38 1 0.1337 4.2992 -1.5481 39 1 3.0595 3.5288 -1.8869 40 1 2.3638 3.8721 -0.2831 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261292204.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:01 Heat of formation + Delta-G solvation = -32.160237 kcal Electronic energy + Delta-G solvation = -16969.573416 eV Core-core repulsion = 14589.754209 eV Total energy + Delta-G solvation = -2379.819206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.55842 -37.70667 -34.68258 -33.19261 -32.64659 -29.12184 -28.11571 -25.92115 -25.53187 -24.25692 -21.66959 -21.56368 -19.40055 -18.09106 -17.02730 -16.37572 -16.27966 -15.90016 -15.52561 -15.11720 -14.58990 -14.12225 -13.94936 -13.77934 -13.52556 -13.13985 -12.85706 -12.80121 -12.63477 -12.38537 -12.34967 -12.08796 -11.85622 -11.75089 -11.49732 -11.43119 -11.29239 -10.89983 -10.53034 -10.41218 -10.27065 -9.07427 -8.00631 -6.10088 1.38118 1.41546 1.50804 2.46167 3.13761 3.27401 4.01365 4.08832 4.16984 4.32232 4.38613 4.53054 4.61630 4.67976 4.69249 4.71964 4.83098 4.84556 4.88380 4.94360 5.05435 5.11378 5.13127 5.23176 5.25800 5.39099 5.44865 5.49887 5.53429 5.67782 5.73450 5.76620 5.81324 6.10573 6.28043 6.33943 6.49723 6.54316 7.00708 7.55277 9.03926 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030944 B = 0.008802 C = 0.007547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.641670 B = 3180.321303 C = 3708.986556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.113 4.113 3 C 0.052 3.948 4 H -0.015 1.015 5 C -0.500 4.500 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.920 5.920 9 Si 0.938 3.062 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.285 1.285 13 C -0.065 4.065 14 H 0.044 0.956 15 C -0.108 4.108 16 C -0.109 4.109 17 C 0.067 3.933 18 N -0.566 5.566 19 C 0.030 3.970 20 C 0.085 3.915 21 C -0.101 4.101 22 H 0.036 0.964 23 H 0.047 0.953 24 H 0.037 0.963 25 H 0.032 0.968 26 H 0.051 0.949 27 H 0.256 0.744 28 H 0.043 0.957 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.029 0.971 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.020 0.980 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.003 0.997 39 H 0.058 0.942 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.293 5.167 -12.497 14.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.151 4.151 3 C 0.034 3.966 4 H 0.004 0.996 5 C -0.538 4.538 6 H 0.067 0.933 7 C -0.185 4.185 8 N -0.560 5.560 9 Si 0.765 3.235 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.083 4.083 14 H 0.062 0.938 15 C -0.145 4.145 16 C -0.147 4.147 17 C -0.059 4.059 18 N -0.290 5.290 19 C -0.117 4.117 20 C -0.044 4.044 21 C -0.139 4.139 22 H 0.055 0.945 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.039 0.961 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.021 0.979 39 H 0.077 0.923 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.781 5.116 -12.487 14.014 hybrid contribution -0.840 0.054 1.766 1.956 sum -4.621 5.170 -10.721 12.768 Atomic orbital electron populations 1.21509 0.96781 0.99004 1.00408 1.21435 0.95389 0.99168 0.99080 1.18761 0.93445 0.92349 0.92069 0.99649 1.21421 1.29914 1.10979 0.91521 0.93320 1.25606 0.95788 0.95766 1.01355 1.70031 1.38798 1.24426 1.22792 0.85808 0.78133 0.78948 0.80620 1.19224 1.21096 1.21089 1.20896 0.98490 0.94518 0.94425 0.93792 1.21977 1.00304 0.98021 0.94239 1.21375 0.98932 0.97698 0.96721 1.21843 0.96279 0.87844 0.99948 1.58931 1.56511 1.04616 1.08977 1.22407 0.94673 0.94390 1.00202 1.20818 0.96660 0.99465 0.87481 1.21420 0.98060 0.94837 0.99609 0.94456 0.93370 0.94392 0.94967 0.93031 0.93500 0.93834 0.92680 0.91687 0.90467 0.95268 0.89097 0.91130 0.96116 0.89883 0.91246 0.97909 0.92344 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 9.26 71.98 0.67 -4.46 16 2 C -0.11 -5.38 5.01 30.59 0.15 -5.23 16 3 C 0.05 2.58 1.53 -11.54 -0.02 2.56 16 4 H -0.01 -0.83 8.14 -2.39 -0.02 -0.84 16 5 C -0.50 -26.96 6.02 25.60 0.15 -26.81 16 6 H 0.05 2.62 7.39 -2.91 -0.02 2.60 16 7 C 0.01 0.69 5.30 84.65 0.45 1.14 16 8 N -0.92 -53.79 11.33 21.45 0.24 -53.55 16 9 Si 0.94 44.18 29.54 68.60 2.03 46.21 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 13 C -0.06 -2.60 0.79 -11.13 -0.01 -2.61 16 14 H 0.04 1.84 5.24 -2.39 -0.01 1.82 16 15 C -0.11 -3.68 4.08 31.26 0.13 -3.55 16 16 C -0.11 -2.99 5.41 30.16 0.16 -2.82 16 17 C 0.07 1.75 5.37 85.45 0.46 2.21 16 18 N -0.57 -15.55 4.19 -939.57 -3.94 -19.49 16 19 C 0.03 0.64 9.46 127.69 1.21 1.85 16 20 C 0.09 2.76 4.93 88.07 0.43 3.19 16 21 C -0.10 -3.88 4.94 30.35 0.15 -3.73 16 22 H 0.04 1.75 7.06 -2.39 -0.02 1.73 16 23 H 0.05 1.85 6.42 -2.39 -0.02 1.84 16 24 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.03 1.39 6.59 -2.39 -0.02 1.38 16 26 H 0.05 2.83 6.09 -2.39 -0.01 2.81 16 27 H 0.26 14.36 8.31 -92.71 -0.77 13.58 16 28 H 0.04 1.57 7.97 -2.39 -0.02 1.55 16 29 H 0.05 1.83 6.96 -2.38 -0.02 1.82 16 30 H 0.06 1.87 7.26 -2.39 -0.02 1.86 16 31 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.03 0.85 6.66 -2.39 -0.02 0.84 16 33 H 0.09 1.86 7.62 -2.39 -0.02 1.84 16 34 H 0.07 1.38 8.05 -2.39 -0.02 1.36 16 35 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.08 1.42 7.83 -2.39 -0.02 1.40 16 37 H 0.07 2.09 7.93 -2.39 -0.02 2.07 16 38 H 0.00 0.10 7.54 -2.39 -0.02 0.08 16 39 H 0.06 2.18 7.11 -2.39 -0.02 2.17 16 40 H 0.06 2.44 6.54 -2.39 -0.02 2.43 16 Total: -1.00 -59.11 289.61 3.25 -55.86 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.98 Total: 9.22 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 3.94 Total: -38.25 kcal Atomic # 7 Polarization: -69.34 SS G_CDS: -3.70 Total: -73.04 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -59.11 3.25 -55.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261292204.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.701 kcal (2) G-P(sol) polarization free energy of solvation -59.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds