Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47407 * 2 1 4 4 H 1.09001 * 109.47331 * 175.66046 * 3 2 1 5 5 C 1.50709 * 109.46869 * 55.66358 * 3 2 1 6 6 H 1.07994 * 119.99785 * 239.99919 * 5 3 2 7 7 C 1.37874 * 119.99973 * 60.00100 * 5 3 2 8 8 N 1.31524 * 120.00101 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00147 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47461 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47115 * 300.00256 * 9 7 5 12 12 H 1.48503 * 109.46898 * 59.99933 * 9 7 5 13 13 N 1.46901 * 109.47225 * 295.66731 * 3 2 1 14 14 C 1.46901 * 110.99323 * 273.93765 * 13 3 2 15 15 C 1.53007 * 109.46755 * 176.24681 * 14 13 3 16 16 H 1.09002 * 110.01557 * 305.06961 * 15 14 13 17 17 C 1.54266 * 110.02862 * 66.45588 * 15 14 13 18 18 C 1.54893 * 104.19306 * 142.89594 * 17 15 14 19 19 C 1.54886 * 102.74796 * 322.05641 * 18 17 15 20 20 C 1.53871 * 110.03245 * 183.62046 * 15 14 13 21 21 H 1.09003 * 110.03246 * 121.43257 * 20 15 14 22 22 C 1.52998 * 110.03120 * 0.02562 * 20 15 14 23 23 H 1.09000 * 109.47789 * 185.26054 * 1 2 3 24 24 H 1.09000 * 109.47795 * 305.26797 * 1 2 3 25 25 H 1.09002 * 109.46799 * 65.26442 * 1 2 3 26 26 H 1.09000 * 109.47087 * 239.99784 * 2 1 3 27 27 H 1.09004 * 109.46820 * 120.00213 * 2 1 3 28 28 H 0.96997 * 120.00033 * 179.97438 * 8 7 5 29 29 H 1.00891 * 110.99950 * 37.89435 * 13 3 2 30 30 H 1.08998 * 109.47848 * 296.24703 * 14 13 3 31 31 H 1.09006 * 109.47050 * 56.25416 * 14 13 3 32 32 H 1.09003 * 110.48661 * 261.56930 * 17 15 14 33 33 H 1.08997 * 110.49136 * 24.21715 * 17 15 14 34 34 H 1.09003 * 110.75468 * 80.37235 * 18 17 15 35 35 H 1.08997 * 110.75465 * 203.74050 * 18 17 15 36 36 H 1.08997 * 110.48269 * 156.62067 * 19 18 17 37 37 H 1.09007 * 110.48580 * 279.26453 * 19 18 17 38 38 H 1.09000 * 109.47397 * 60.00027 * 22 20 15 39 39 H 1.09003 * 109.46573 * 180.02562 * 22 20 15 40 40 H 1.09003 * 109.46814 * 299.99130 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1273 1.4434 0.0778 5 6 1.4519 2.1832 1.1733 6 1 0.8404 3.0579 1.0081 7 6 1.6944 1.7441 2.4576 8 7 2.4394 0.6791 2.6588 9 14 0.9660 2.6626 3.9119 10 1 1.3730 1.9941 5.1738 11 1 1.4615 4.0625 3.9118 12 1 -0.5153 2.6619 3.8062 13 7 1.6377 2.1041 -1.2483 14 6 2.6138 1.8508 -2.3165 15 6 2.1154 2.4754 -3.6213 16 1 1.1168 2.1058 -3.8543 17 6 2.0941 4.0129 -3.4969 18 6 2.5309 4.5133 -4.8961 19 6 3.6169 3.4865 -5.3026 20 6 3.0837 2.1407 -4.7694 21 1 2.5552 1.6087 -5.5605 22 6 4.2413 1.2877 -4.2469 23 1 -0.3635 -1.0233 0.0942 24 1 -0.3635 0.5934 0.8390 25 1 -0.3633 0.4300 -0.9334 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.6104 0.3704 3.5623 29 1 0.7122 1.8159 -1.5283 30 1 3.5725 2.2929 -2.0451 31 1 2.7344 0.7758 -2.4511 32 1 1.0885 4.3628 -3.2634 33 1 2.8005 4.3439 -2.7357 34 1 1.6941 4.4874 -5.5942 35 1 2.9521 5.5166 -4.8334 36 1 3.7226 3.4523 -6.3869 37 1 4.5694 3.7324 -4.8330 38 1 3.8494 0.3612 -3.8272 39 1 4.9212 1.0566 -5.0669 40 1 4.7783 1.8382 -3.4743 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300243321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = -29.268664 kcal Electronic energy + Delta-G solvation = -16385.508655 eV Core-core repulsion = 14005.814837 eV Total energy + Delta-G solvation = -2379.693818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.85514 -36.10001 -32.59537 -31.21814 -30.71377 -28.44588 -26.05680 -24.78319 -23.35188 -22.84939 -20.49097 -19.24897 -18.38173 -15.98372 -15.88164 -14.85631 -14.73527 -14.20406 -13.70666 -13.41508 -13.24642 -12.91716 -12.50963 -12.13378 -11.98959 -11.74379 -11.28248 -10.97894 -10.83305 -10.74115 -10.58300 -10.49634 -10.49395 -10.35282 -10.31429 -10.01213 -9.79079 -9.60584 -9.47305 -8.90538 -8.29071 -7.06104 -5.92389 -3.93754 3.36990 3.41171 3.44570 4.48178 4.78070 4.81166 4.92418 5.38778 5.43858 5.49258 5.61380 5.62850 5.71790 5.82799 5.88617 5.92106 6.06832 6.11236 6.18628 6.26587 6.33078 6.37334 6.40010 6.43754 6.54767 6.60923 6.62444 6.69704 6.86687 6.95044 7.34296 7.37160 7.56682 7.76374 7.95480 8.36819 8.65879 8.72338 9.12228 9.69840 11.14560 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.006555 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.993658 B = 4270.415403 C = 4558.850158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.030 0.970 5 C -0.486 4.486 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.290 1.290 11 H -0.278 1.278 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.066 3.934 15 C -0.087 4.087 16 H 0.062 0.938 17 C -0.103 4.103 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.091 4.091 21 H 0.064 0.936 22 C -0.148 4.148 23 H 0.022 0.978 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.009 0.991 27 H 0.092 0.908 28 H 0.259 0.741 29 H 0.323 0.677 30 H 0.064 0.936 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.045 0.955 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.704 2.307 -13.112 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.048 0.952 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.144 4.144 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.216 1.216 11 H -0.204 1.204 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.063 4.063 15 C -0.106 4.106 16 H 0.081 0.919 17 C -0.141 4.141 18 C -0.167 4.167 19 C -0.156 4.156 20 C -0.110 4.110 21 H 0.082 0.918 22 C -0.205 4.205 23 H 0.041 0.959 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.028 0.972 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.141 0.859 30 H 0.082 0.918 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.062 2.805 -12.770 13.117 hybrid contribution -0.556 -0.637 0.642 1.062 sum 0.506 2.168 -12.128 12.331 Atomic orbital electron populations 1.21595 0.97789 0.98603 1.00710 1.22094 0.94896 1.01336 1.00145 1.19167 0.95669 0.88402 0.85961 0.95215 1.21064 1.30410 1.11369 0.89694 0.92144 1.24920 0.95605 0.95188 0.98734 1.69877 1.38875 1.23930 1.21085 0.86645 0.79460 0.79964 0.81809 1.21562 1.20395 1.20422 1.60827 1.03871 1.63062 1.03808 1.22147 0.96905 0.96714 0.90553 1.21818 0.98070 0.96248 0.94417 0.91934 1.22251 1.01708 0.94389 0.95714 1.22544 0.98124 0.98186 0.97825 1.22434 0.98720 0.94837 0.99629 1.21742 0.96258 0.95836 0.97181 0.91764 1.21971 0.97774 1.00153 1.00584 0.95861 0.91285 0.95423 0.97206 0.88979 0.93148 0.85912 0.91799 0.96292 0.91867 0.91058 0.92161 0.92114 0.92474 0.91672 0.92317 0.93614 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.40 37.16 0.35 -2.46 16 2 C -0.15 -3.45 5.52 -26.74 -0.15 -3.60 16 3 C 0.22 5.39 2.33 -68.86 -0.16 5.23 16 4 H 0.03 0.83 7.83 -51.93 -0.41 0.42 16 5 C -0.49 -13.29 7.28 -34.44 -0.25 -13.54 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.54 5.30 -17.82 -0.09 1.44 16 8 N -0.90 -25.62 11.37 55.43 0.63 -24.99 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -14.52 6.05 -107.94 -0.65 -15.17 16 14 C 0.07 1.20 3.57 -3.82 -0.01 1.18 16 15 C -0.09 -1.28 3.06 -89.50 -0.27 -1.56 16 16 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.10 -1.49 6.16 -25.07 -0.15 -1.64 16 18 C -0.13 -1.53 6.91 -24.74 -0.17 -1.70 16 19 C -0.12 -1.36 6.36 -25.08 -0.16 -1.52 16 20 C -0.09 -1.15 3.50 -89.51 -0.31 -1.47 16 21 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 22 C -0.15 -1.88 7.89 37.16 0.29 -1.59 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.07 1.64 6.89 -51.93 -0.36 1.28 16 25 H 0.03 0.53 6.61 -51.93 -0.34 0.19 16 26 H 0.01 0.21 7.40 -51.93 -0.38 -0.18 16 27 H 0.09 2.46 6.20 -51.93 -0.32 2.14 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.32 6.62 6.54 -39.30 -0.26 6.36 16 30 H 0.06 1.21 6.84 -51.93 -0.36 0.86 16 31 H 0.02 0.35 5.75 -51.93 -0.30 0.05 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 1.15 7.78 -51.93 -0.40 0.74 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.76 7.84 -51.92 -0.41 0.35 16 38 H 0.06 0.79 6.65 -51.93 -0.35 0.45 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.82 6.82 -51.93 -0.35 0.47 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -27.36 299.95 -8.78 -36.14 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.16 Total: 4.19 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -1.10 Total: -21.22 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.02 Total: -40.16 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.36 -8.78 -36.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300243321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.873 kcal (2) G-P(sol) polarization free energy of solvation -27.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds