Wall clock time and date at job start Mon Mar 30 2020 02:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47407 * 2 1 4 4 H 1.09001 * 109.47331 * 175.66046 * 3 2 1 5 5 C 1.50709 * 109.46869 * 55.66358 * 3 2 1 6 6 H 1.07994 * 119.99785 * 239.99919 * 5 3 2 7 7 C 1.37874 * 119.99973 * 60.00100 * 5 3 2 8 8 N 1.31524 * 120.00101 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00147 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47461 * 180.02562 * 9 7 5 11 11 H 1.48497 * 109.47115 * 300.00256 * 9 7 5 12 12 H 1.48503 * 109.46898 * 59.99933 * 9 7 5 13 13 N 1.46901 * 109.47225 * 295.66731 * 3 2 1 14 14 C 1.46901 * 110.99323 * 273.93765 * 13 3 2 15 15 C 1.53007 * 109.46755 * 176.24681 * 14 13 3 16 16 H 1.09002 * 110.01557 * 305.06961 * 15 14 13 17 17 C 1.54266 * 110.02862 * 66.45588 * 15 14 13 18 18 C 1.54893 * 104.19306 * 142.89594 * 17 15 14 19 19 C 1.54886 * 102.74796 * 322.05641 * 18 17 15 20 20 C 1.53871 * 110.03245 * 183.62046 * 15 14 13 21 21 H 1.09003 * 110.03246 * 121.43257 * 20 15 14 22 22 C 1.52998 * 110.03120 * 0.02562 * 20 15 14 23 23 H 1.09000 * 109.47789 * 185.26054 * 1 2 3 24 24 H 1.09000 * 109.47795 * 305.26797 * 1 2 3 25 25 H 1.09002 * 109.46799 * 65.26442 * 1 2 3 26 26 H 1.09000 * 109.47087 * 239.99784 * 2 1 3 27 27 H 1.09004 * 109.46820 * 120.00213 * 2 1 3 28 28 H 0.96997 * 120.00033 * 179.97438 * 8 7 5 29 29 H 1.00891 * 110.99950 * 37.89435 * 13 3 2 30 30 H 1.08998 * 109.47848 * 296.24703 * 14 13 3 31 31 H 1.09006 * 109.47050 * 56.25416 * 14 13 3 32 32 H 1.09003 * 110.48661 * 261.56930 * 17 15 14 33 33 H 1.08997 * 110.49136 * 24.21715 * 17 15 14 34 34 H 1.09003 * 110.75468 * 80.37235 * 18 17 15 35 35 H 1.08997 * 110.75465 * 203.74050 * 18 17 15 36 36 H 1.08997 * 110.48269 * 156.62067 * 19 18 17 37 37 H 1.09007 * 110.48580 * 279.26453 * 19 18 17 38 38 H 1.09000 * 109.47397 * 60.00027 * 22 20 15 39 39 H 1.09003 * 109.46573 * 180.02562 * 22 20 15 40 40 H 1.09003 * 109.46814 * 299.99130 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1273 1.4434 0.0778 5 6 1.4519 2.1832 1.1733 6 1 0.8404 3.0579 1.0081 7 6 1.6944 1.7441 2.4576 8 7 2.4394 0.6791 2.6588 9 14 0.9660 2.6626 3.9119 10 1 1.3730 1.9941 5.1738 11 1 1.4615 4.0625 3.9118 12 1 -0.5153 2.6619 3.8062 13 7 1.6377 2.1041 -1.2483 14 6 2.6138 1.8508 -2.3165 15 6 2.1154 2.4754 -3.6213 16 1 1.1168 2.1058 -3.8543 17 6 2.0941 4.0129 -3.4969 18 6 2.5309 4.5133 -4.8961 19 6 3.6169 3.4865 -5.3026 20 6 3.0837 2.1407 -4.7694 21 1 2.5552 1.6087 -5.5605 22 6 4.2413 1.2877 -4.2469 23 1 -0.3635 -1.0233 0.0942 24 1 -0.3635 0.5934 0.8390 25 1 -0.3633 0.4300 -0.9334 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.6104 0.3704 3.5623 29 1 0.7122 1.8159 -1.5283 30 1 3.5725 2.2929 -2.0451 31 1 2.7344 0.7758 -2.4511 32 1 1.0885 4.3628 -3.2634 33 1 2.8005 4.3439 -2.7357 34 1 1.6941 4.4874 -5.5942 35 1 2.9521 5.5166 -4.8334 36 1 3.7226 3.4523 -6.3869 37 1 4.5694 3.7324 -4.8330 38 1 3.8494 0.3612 -3.8272 39 1 4.9212 1.0566 -5.0669 40 1 4.7783 1.8382 -3.4743 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300243321.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:10 Heat of formation + Delta-G solvation = -44.288210 kcal Electronic energy + Delta-G solvation = -16386.159952 eV Core-core repulsion = 14005.814837 eV Total energy + Delta-G solvation = -2380.345115 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.05273 -37.87460 -34.45223 -32.70215 -32.08998 -29.91377 -27.93382 -25.88771 -25.18943 -24.38892 -21.51648 -21.18886 -19.60531 -18.00632 -17.04830 -16.67954 -16.33511 -15.60279 -15.22200 -14.75428 -14.60876 -14.37714 -14.29032 -13.84668 -13.28797 -13.11343 -12.82758 -12.72947 -12.64188 -12.45209 -12.05739 -11.82220 -11.72026 -11.57164 -11.49076 -11.45537 -11.39897 -11.30233 -11.03237 -10.86621 -10.42019 -8.82652 -8.04312 -6.13090 1.43721 1.44804 1.52294 2.46248 3.23873 3.59569 3.76882 3.82534 4.04889 4.37917 4.48305 4.52731 4.56826 4.58297 4.66028 4.68962 4.74278 4.78631 4.81849 4.98144 5.00786 5.07705 5.10930 5.14858 5.20894 5.34679 5.37243 5.39858 5.44182 5.51353 5.60649 5.65767 5.70044 5.74611 5.87159 6.34631 6.73542 6.91715 7.02028 7.55003 9.00852 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036308 B = 0.006555 C = 0.006140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.993658 B = 4270.415403 C = 4558.850158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C 0.222 3.778 4 H -0.009 1.009 5 C -0.500 4.500 6 H 0.052 0.948 7 C 0.012 3.988 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.287 1.287 11 H -0.276 1.276 12 H -0.270 1.270 13 N -0.687 5.687 14 C 0.073 3.927 15 C -0.083 4.083 16 H 0.067 0.933 17 C -0.105 4.105 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.088 4.088 21 H 0.081 0.919 22 C -0.147 4.147 23 H 0.042 0.958 24 H 0.045 0.955 25 H 0.049 0.951 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.259 0.741 29 H 0.329 0.671 30 H 0.047 0.953 31 H 0.016 0.984 32 H 0.057 0.943 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.112 2.737 -14.745 14.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.009 0.991 5 C -0.538 4.538 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.212 1.212 11 H -0.202 1.202 12 H -0.196 1.196 13 N -0.318 5.318 14 C -0.057 4.057 15 C -0.102 4.102 16 H 0.085 0.915 17 C -0.143 4.143 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.107 4.107 21 H 0.099 0.901 22 C -0.204 4.204 23 H 0.061 0.939 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.148 0.852 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.240 3.242 -14.419 14.781 hybrid contribution -0.263 -0.778 1.129 1.396 sum -0.023 2.464 -13.290 13.517 Atomic orbital electron populations 1.21472 0.95825 0.99608 1.00848 1.21939 0.96565 1.00118 0.99177 1.18912 0.93129 0.89373 0.87242 0.99124 1.21287 1.30368 1.11298 0.90883 0.92983 1.25622 0.95931 0.95900 1.01165 1.70014 1.39779 1.25059 1.21472 0.85705 0.79047 0.78685 0.78745 1.21229 1.20198 1.19552 1.60703 1.04809 1.62678 1.03584 1.22134 0.95583 0.96689 0.91248 1.21800 0.98830 0.96232 0.93296 0.91453 1.22217 1.00788 0.94236 0.97057 1.22511 0.98732 0.98662 0.95986 1.22430 0.98242 0.93662 1.00949 1.21751 0.95664 0.96758 0.96521 0.90108 1.21942 0.98174 0.99399 1.00859 0.93916 0.93605 0.93209 0.95935 0.92087 0.93241 0.85207 0.93450 0.96613 0.92441 0.93467 0.90700 0.91238 0.90188 0.92111 0.93474 0.91534 0.93642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.08 9.40 71.98 0.68 -4.41 16 2 C -0.14 -6.63 5.52 30.59 0.17 -6.46 16 3 C 0.22 11.37 2.33 44.17 0.10 11.47 16 4 H -0.01 -0.54 7.83 -2.39 -0.02 -0.55 16 5 C -0.50 -27.76 7.28 25.60 0.19 -27.57 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.65 5.30 84.65 0.45 1.10 16 8 N -0.92 -53.71 11.37 21.45 0.24 -53.47 16 9 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 10 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 13 N -0.69 -29.37 6.05 -495.42 -3.00 -32.36 16 14 C 0.07 2.64 3.57 86.31 0.31 2.95 16 15 C -0.08 -2.35 3.06 -10.07 -0.03 -2.38 16 16 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 17 C -0.11 -2.95 6.16 31.67 0.20 -2.75 16 18 C -0.12 -2.57 6.91 31.89 0.22 -2.35 16 19 C -0.12 -2.33 6.36 31.67 0.20 -2.13 16 20 C -0.09 -2.03 3.50 -10.07 -0.04 -2.07 16 21 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 22 C -0.15 -3.56 7.89 71.98 0.57 -2.99 16 23 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.04 2.14 6.89 -2.39 -0.02 2.13 16 25 H 0.05 1.85 6.61 -2.39 -0.02 1.84 16 26 H 0.02 0.99 7.40 -2.39 -0.02 0.97 16 27 H 0.06 3.32 6.20 -2.38 -0.01 3.31 16 28 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 29 H 0.33 13.27 6.54 -89.70 -0.59 12.69 16 30 H 0.05 1.87 6.84 -2.39 -0.02 1.85 16 31 H 0.02 0.59 5.75 -2.38 -0.01 0.57 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.53 7.78 -2.39 -0.02 1.51 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.29 7.84 -2.38 -0.02 1.27 16 38 H 0.05 1.23 6.65 -2.39 -0.02 1.22 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.04 1.23 6.82 -2.39 -0.02 1.21 16 Total: -1.00 -59.05 299.95 2.69 -56.37 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.40 Total: 20.59 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 3.01 Total: -37.59 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -2.75 Total: -85.83 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -59.05 2.69 -56.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300243321.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.078 kcal (2) G-P(sol) polarization free energy of solvation -59.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds