Wall clock time and date at job start Mon Mar 30 2020 03:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47597 * 2 1 4 4 N 1.46502 * 109.47245 * 120.00609 * 2 1 3 5 5 C 1.36931 * 120.00117 * 122.90349 * 4 2 1 6 6 H 1.08002 * 119.99808 * 208.85782 * 5 4 2 7 7 C 1.38813 * 120.00551 * 28.85896 * 5 4 2 8 8 N 1.31622 * 119.99553 * 19.14518 * 7 5 4 9 9 Si 1.86797 * 120.00369 * 199.15001 * 7 5 4 10 10 H 1.48500 * 109.47287 * 89.99740 * 9 7 5 11 11 H 1.48498 * 109.47009 * 210.00250 * 9 7 5 12 12 H 1.48507 * 109.46856 * 329.99462 * 9 7 5 13 13 C 1.46506 * 119.99612 * 302.89725 * 4 2 1 14 14 C 1.52997 * 109.47150 * 270.00415 * 13 4 2 15 15 C 1.53004 * 109.46978 * 180.02562 * 14 13 4 16 16 C 1.54956 * 110.92518 * 71.53511 * 15 14 13 17 17 C 1.54268 * 104.16156 * 156.29722 * 16 15 14 18 18 C 1.53883 * 106.63713 * 336.44760 * 17 16 15 19 19 C 1.54260 * 106.59710 * 359.97403 * 18 17 16 20 20 H 1.09001 * 109.46416 * 299.99898 * 1 2 3 21 21 H 1.08997 * 109.46891 * 59.99401 * 1 2 3 22 22 H 1.08999 * 109.47180 * 180.02562 * 1 2 3 23 23 H 1.09008 * 109.47005 * 239.99861 * 2 1 3 24 24 H 1.08995 * 109.47409 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.46831 * 300.00601 * 3 2 1 26 26 H 1.09001 * 109.46752 * 59.99688 * 3 2 1 27 27 H 0.96994 * 119.99485 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46714 * 149.99895 * 13 4 2 29 29 H 1.09002 * 109.46668 * 30.00102 * 13 4 2 30 30 H 1.08997 * 109.47124 * 60.00343 * 14 13 4 31 31 H 1.09002 * 109.47079 * 299.99435 * 14 13 4 32 32 H 1.09004 * 110.66834 * 308.22950 * 15 14 13 33 33 H 1.09003 * 110.47684 * 37.64740 * 16 15 14 34 34 H 1.08997 * 110.53655 * 274.97894 * 16 15 14 35 35 H 1.08995 * 110.03374 * 217.14211 * 17 16 15 36 36 H 1.09000 * 110.03105 * 95.75358 * 17 16 15 37 37 H 1.08995 * 110.02979 * 119.26008 * 18 17 16 38 38 H 1.09000 * 110.03091 * 240.63856 * 18 17 16 39 39 H 1.08997 * 110.48420 * 142.28842 * 19 18 17 40 40 H 1.09003 * 110.48554 * 264.79729 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8540 -1.7683 1.0712 6 1 2.8528 -2.5426 1.8242 7 6 3.7025 -1.8657 -0.0230 8 7 3.9911 -0.7932 -0.7294 9 14 4.4346 -3.5186 -0.4932 10 1 3.5294 -4.2075 -1.4478 11 1 5.7597 -3.3099 -1.1302 12 1 4.5969 -4.3526 0.7249 13 6 1.6128 -0.2284 2.5258 14 6 2.6135 0.8130 3.0308 15 6 2.1902 1.2954 4.4198 16 6 2.4225 0.1925 5.4832 17 6 2.5502 0.9687 6.8103 18 6 2.9877 2.3979 6.4444 19 6 3.1116 2.4409 4.9074 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1301 1.4424 0.0005 25 1 1.6767 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 4.5843 -0.8612 -1.4938 28 1 1.5903 -1.0740 3.2132 29 1 0.6207 0.2193 2.4678 30 1 2.6359 1.6586 2.3434 31 1 3.6056 0.3653 3.0889 32 1 1.1476 1.6135 4.4154 33 1 3.3414 -0.3542 5.2712 34 1 1.5722 -0.4885 5.5199 35 1 3.3008 0.4998 7.4464 36 1 1.5886 0.9923 7.3230 37 1 2.2381 3.1150 6.7788 38 1 3.9503 2.6228 6.9038 39 1 2.7638 3.3999 4.5234 40 1 4.1424 2.2602 4.6025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300716708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:51 Heat of formation + Delta-G solvation = -11.306497 kcal Electronic energy + Delta-G solvation = -16525.542594 eV Core-core repulsion = 14146.627674 eV Total energy + Delta-G solvation = -2378.914920 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.15858 -36.40129 -32.11883 -31.65166 -29.42515 -28.40570 -26.24295 -25.93622 -23.47573 -21.49793 -20.02128 -19.35173 -18.89450 -16.68279 -15.57058 -14.72564 -14.57364 -14.17594 -13.44441 -13.35089 -13.05934 -12.51005 -12.36377 -11.99876 -11.60441 -11.34218 -11.20305 -11.04744 -10.86012 -10.80869 -10.76257 -10.48758 -10.44605 -10.23456 -10.14735 -10.01613 -9.77303 -9.61668 -9.31875 -9.18363 -8.33906 -6.55420 -5.71369 -3.13005 3.41878 3.49284 3.49975 4.56315 4.89053 4.94234 4.98927 5.44093 5.50284 5.67750 5.70799 5.82626 5.87217 5.97903 6.05073 6.09917 6.14475 6.21823 6.34987 6.40480 6.46327 6.50129 6.55594 6.58303 6.64978 6.67254 6.80069 6.86672 6.89144 6.97345 7.14001 7.20105 7.41646 7.75376 7.81903 7.94933 8.57833 9.33164 9.97292 10.51141 11.35618 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026887 B = 0.007793 C = 0.006839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.142730 B = 3591.895555 C = 4093.099918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.181 3.819 3 C -0.146 4.146 4 N -0.586 5.586 5 C -0.250 4.250 6 H 0.063 0.937 7 C 0.003 3.997 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.280 1.280 13 C 0.150 3.850 14 C -0.132 4.132 15 C -0.090 4.090 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.124 4.124 19 C -0.121 4.121 20 H 0.038 0.962 21 H 0.038 0.962 22 H 0.044 0.956 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.023 0.977 26 H 0.027 0.973 27 H 0.251 0.749 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.857 5.058 9.112 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.074 3.926 3 C -0.204 4.204 4 N -0.306 5.306 5 C -0.380 4.380 6 H 0.081 0.919 7 C -0.195 4.195 8 N -0.539 5.539 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.219 1.219 12 H -0.206 1.206 13 C 0.023 3.977 14 C -0.172 4.172 15 C -0.109 4.109 16 C -0.155 4.155 17 C -0.163 4.163 18 C -0.161 4.161 19 C -0.158 4.158 20 H 0.057 0.943 21 H 0.057 0.943 22 H 0.063 0.937 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.748 5.049 8.972 10.956 hybrid contribution 0.524 -0.722 -0.266 0.930 sum -3.224 4.327 8.706 10.243 Atomic orbital electron populations 1.22369 1.00584 1.00145 0.99220 1.20232 0.88209 0.91937 0.92183 1.22236 1.03216 0.97743 0.97245 1.44020 1.53869 1.33680 0.99066 1.19165 1.13913 0.96975 1.07900 0.91943 1.24991 0.97165 0.96645 1.00723 1.70042 1.37298 1.26031 1.20563 0.86386 0.78120 0.84434 0.78409 1.21612 1.21949 1.20589 1.20825 0.94534 0.94575 0.87744 1.22388 1.01440 1.00179 0.93207 1.22182 0.98540 0.94370 0.95810 1.22424 1.01743 0.97602 0.93761 1.22148 1.00486 0.95645 0.97990 1.22124 1.00472 0.96824 0.96726 1.22420 1.00386 0.98654 0.94365 0.94327 0.94332 0.93703 0.88792 0.90907 0.95781 0.95371 0.93883 0.94339 0.94823 0.92073 0.92133 0.91651 0.91501 0.92016 0.92485 0.92474 0.92492 0.92512 0.92339 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 9.12 37.16 0.34 -2.96 16 2 C 0.18 4.28 2.39 -67.93 -0.16 4.12 16 3 C -0.15 -3.23 8.15 37.16 0.30 -2.93 16 4 N -0.59 -14.47 2.42 -165.65 -0.40 -14.87 16 5 C -0.25 -6.80 9.57 -15.06 -0.14 -6.95 16 6 H 0.06 1.71 7.90 -52.49 -0.41 1.29 16 7 C 0.00 0.09 4.83 -17.43 -0.08 0.01 16 8 N -0.90 -25.38 10.32 55.49 0.57 -24.80 16 9 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.15 3.14 5.06 -4.04 -0.02 3.12 16 14 C -0.13 -2.56 4.78 -26.73 -0.13 -2.69 16 15 C -0.09 -1.39 2.86 -88.59 -0.25 -1.65 16 16 C -0.12 -1.71 5.71 -25.03 -0.14 -1.85 16 17 C -0.13 -1.53 6.80 -25.61 -0.17 -1.71 16 18 C -0.12 -1.49 6.80 -25.61 -0.17 -1.67 16 19 C -0.12 -1.69 6.27 -25.08 -0.16 -1.85 16 20 H 0.04 0.72 6.57 -51.93 -0.34 0.38 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.09 2.54 5.89 -51.92 -0.31 2.23 16 24 H 0.07 1.83 7.29 -51.93 -0.38 1.45 16 25 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.03 0.57 6.07 -51.93 -0.32 0.26 16 27 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.04 0.81 7.56 -51.93 -0.39 0.41 16 29 H 0.03 0.67 6.28 -51.93 -0.33 0.34 16 30 H 0.06 1.25 5.42 -51.93 -0.28 0.97 16 31 H 0.06 1.32 8.00 -51.93 -0.42 0.91 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.05 7.95 -51.93 -0.41 0.64 16 34 H 0.06 0.88 8.10 -51.93 -0.42 0.45 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 LS Contribution 302.65 15.07 4.56 4.56 Total: -1.00 -27.56 302.65 -8.46 -36.02 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -7.36 Total: -0.67 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: -0.80 Total: -16.99 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.17 Total: -39.67 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -27.56 -8.46 -36.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300716708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.714 kcal (2) G-P(sol) polarization free energy of solvation -27.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds