Wall clock time and date at job start Mon Mar 30 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47252 * 2 1 4 4 N 1.46901 * 109.47123 * 240.00338 * 2 1 3 5 5 C 1.46899 * 111.00047 * 85.28731 * 4 2 1 6 6 C 1.50708 * 109.47043 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99854 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99818 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99842 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46881 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46694 * 120.00263 * 10 8 6 13 13 H 1.48500 * 109.47236 * 240.00147 * 10 8 6 14 14 C 1.52997 * 109.47409 * 120.00178 * 2 1 3 15 15 C 1.53005 * 117.49759 * 185.25407 * 14 2 1 16 16 C 1.53007 * 117.49522 * 214.97749 * 15 14 2 17 17 C 1.52999 * 117.49966 * 359.97438 * 15 14 2 18 18 C 1.53005 * 60.02869 * 107.47884 * 15 14 2 19 19 C 1.53001 * 117.49880 * 107.50608 * 18 15 14 20 20 C 1.53001 * 117.49562 * 252.51843 * 18 15 14 21 21 H 1.09006 * 109.47091 * 304.48044 * 1 2 3 22 22 H 1.09000 * 109.47658 * 64.47950 * 1 2 3 23 23 H 1.09000 * 109.46732 * 184.48597 * 1 2 3 24 24 H 1.00897 * 111.00422 * 209.24497 * 4 2 1 25 25 H 1.08996 * 109.47183 * 300.00008 * 5 4 2 26 26 H 1.08995 * 109.47202 * 60.00020 * 5 4 2 27 27 H 0.97003 * 119.99477 * 180.02562 * 9 8 6 28 28 H 1.08996 * 115.55253 * 39.58768 * 14 2 1 29 29 H 1.08995 * 109.46877 * 212.24310 * 16 15 14 30 30 H 1.09002 * 109.46662 * 92.24438 * 16 15 14 31 31 H 1.08999 * 109.47270 * 332.24795 * 16 15 14 32 32 H 1.09000 * 109.47025 * 277.97785 * 17 15 14 33 33 H 1.08995 * 109.47043 * 37.97815 * 17 15 14 34 34 H 1.08996 * 109.46703 * 157.97878 * 17 15 14 35 35 H 1.08996 * 109.47660 * 119.28885 * 19 18 15 36 36 H 1.09001 * 109.46775 * 239.28953 * 19 18 15 37 37 H 1.09005 * 109.47088 * 359.28770 * 19 18 15 38 38 H 1.08998 * 109.46884 * 68.05134 * 20 18 15 39 39 H 1.08994 * 109.47032 * 188.04996 * 20 18 15 40 40 H 1.08997 * 109.47113 * 308.04984 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0889 0.2244 -2.3452 6 6 2.5936 -0.5201 -3.5545 7 1 2.8388 -1.5692 -3.4792 8 6 2.7423 0.1382 -4.7568 9 7 2.4442 1.4159 -4.8481 10 14 3.3685 -0.7844 -6.2555 11 1 3.6305 -2.2000 -5.8915 12 1 2.3469 -0.7314 -7.3319 13 1 4.6255 -0.1552 -6.7346 14 6 2.0400 -0.7213 1.2492 15 6 3.5497 -0.7214 1.4979 16 6 4.1607 -1.9715 2.1343 17 6 4.4338 -0.0007 0.4781 18 6 2.6316 0.1381 2.3693 19 6 2.3948 -0.3183 3.8104 20 6 2.6675 1.6524 2.1539 21 1 -0.3633 0.5818 0.8472 22 1 -0.3634 0.4427 -0.9274 23 1 -0.3633 -1.0245 0.0804 24 1 2.9151 -1.1245 -1.0275 25 1 1.0957 0.6225 -2.5525 26 1 2.7681 1.0447 -2.1135 27 1 2.5484 1.8789 -5.6941 28 1 1.4823 -1.6119 1.5385 29 1 5.0099 -1.6853 2.7548 30 1 4.4959 -2.6511 1.3508 31 1 3.4116 -2.4687 2.7505 32 1 4.6158 -0.6570 -0.3730 33 1 3.9318 0.9049 0.1378 34 1 5.3836 0.2632 0.9431 35 1 2.7452 0.4518 4.4976 36 1 1.3296 -0.4880 3.9673 37 1 2.9410 -1.2438 3.9928 38 1 2.2498 1.8902 1.1756 39 1 2.0795 2.1437 2.9291 40 1 3.6986 2.0021 2.2035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308677038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:28 Heat of formation + Delta-G solvation = 5.567084 kcal Electronic energy + Delta-G solvation = -16484.808074 eV Core-core repulsion = 14106.624847 eV Total energy + Delta-G solvation = -2378.183227 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.82463 -35.20405 -32.59448 -31.08762 -29.77296 -28.61923 -26.88647 -26.14167 -25.83651 -22.45151 -20.73533 -18.83656 -17.51740 -16.31032 -15.45821 -14.92947 -14.60089 -14.16966 -13.83119 -13.57694 -12.83488 -12.52437 -12.42574 -12.16675 -12.04351 -12.01470 -11.81661 -11.69181 -11.59355 -11.42597 -11.24609 -11.12196 -10.81186 -10.59046 -10.53262 -10.07100 -9.79921 -9.28579 -9.00783 -8.93996 -8.44015 -7.13156 -5.99764 -4.00990 3.32671 3.39920 3.45198 3.82720 4.46118 4.73799 4.85380 4.94376 5.21685 5.30449 5.36272 5.48569 5.60792 5.64467 5.74966 5.81025 5.81802 5.87224 5.98030 6.01137 6.08193 6.11925 6.17012 6.19188 6.27453 6.34557 6.41281 6.50292 6.56722 6.68773 6.71627 6.91410 7.35575 7.50110 7.85173 8.20445 8.53580 8.72890 9.09669 9.63948 11.11375 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036725 B = 0.006649 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.240602 B = 4210.182527 C = 4458.787500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.105 3.895 3 H 0.045 0.955 4 N -0.685 5.685 5 C 0.195 3.805 6 C -0.510 4.510 7 H 0.061 0.939 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.285 1.285 14 C -0.128 4.128 15 C -0.120 4.120 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.125 4.125 21 H 0.042 0.958 22 H 0.056 0.944 23 H 0.053 0.947 24 H 0.331 0.669 25 H 0.026 0.974 26 H -0.016 1.016 27 H 0.260 0.740 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 -2.323 15.235 15.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.005 4.005 3 H 0.063 0.937 4 N -0.318 5.318 5 C 0.068 3.932 6 C -0.549 4.549 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.211 1.211 14 C -0.146 4.146 15 C -0.120 4.120 16 C -0.170 4.170 17 C -0.177 4.177 18 C -0.123 4.123 19 C -0.174 4.174 20 C -0.182 4.182 21 H 0.061 0.939 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.150 0.850 25 H 0.044 0.956 26 H 0.002 0.998 27 H 0.069 0.931 28 H 0.119 0.881 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.732 -2.421 14.923 15.136 hybrid contribution 1.042 0.168 -0.706 1.269 sum 1.774 -2.253 14.217 14.503 Atomic orbital electron populations 1.21713 0.95433 1.01234 1.00629 1.21153 0.95188 0.95604 0.88564 0.93736 1.60723 1.33148 1.34298 1.03597 1.19567 0.96224 0.90222 0.87144 1.21241 1.42931 0.96585 0.94141 0.92049 1.24983 0.95770 0.94879 0.98960 1.69979 1.49188 1.08891 1.25765 0.86465 0.78346 0.80002 0.82741 1.19683 1.21041 1.21146 1.22862 0.94667 1.00549 0.96563 1.21710 0.91997 0.98006 1.00294 1.21300 0.99981 0.95669 1.00015 1.21389 0.98310 1.00471 0.97506 1.21689 1.04757 0.93599 0.92296 1.21408 1.01301 1.01075 0.93585 1.21523 1.01513 0.92661 1.02494 0.93869 0.92453 0.92812 0.84995 0.95563 0.99848 0.93060 0.88076 0.92704 0.92061 0.92515 0.91507 0.91912 0.92880 0.92650 0.92586 0.92072 0.91080 0.92664 0.92539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.29 9.44 37.16 0.35 -1.94 16 2 C 0.10 1.90 1.77 -67.71 -0.12 1.78 16 3 H 0.05 0.86 4.03 -51.93 -0.21 0.65 16 4 N -0.69 -14.97 6.19 -107.99 -0.67 -15.64 16 5 C 0.20 5.17 5.24 -4.97 -0.03 5.14 16 6 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 16 7 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 10 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 11 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 C -0.13 -1.94 4.58 -90.58 -0.41 -2.35 16 15 C -0.12 -1.68 2.44 -154.50 -0.38 -2.06 16 16 C -0.11 -1.35 8.72 37.16 0.32 -1.02 16 17 C -0.12 -1.85 7.74 37.16 0.29 -1.56 16 18 C -0.12 -1.62 2.70 -154.47 -0.42 -2.03 16 19 C -0.12 -1.27 9.64 37.16 0.36 -0.91 16 20 C -0.13 -1.65 8.33 37.16 0.31 -1.34 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.06 1.10 7.38 -51.93 -0.38 0.71 16 23 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.33 7.03 5.73 -39.29 -0.23 6.80 16 25 H 0.03 0.75 7.39 -51.93 -0.38 0.37 16 26 H -0.02 -0.45 8.05 -51.93 -0.42 -0.87 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.10 1.52 8.14 -51.93 -0.42 1.09 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.62 6.62 -51.93 -0.34 0.28 16 32 H 0.07 1.12 6.87 -51.93 -0.36 0.76 16 33 H 0.06 1.07 5.60 -51.93 -0.29 0.78 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.55 8.02 -51.93 -0.42 0.13 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.62 5.58 -51.93 -0.29 0.33 16 38 H 0.07 1.06 4.88 -51.93 -0.25 0.81 16 39 H 0.05 0.64 8.01 -51.93 -0.42 0.22 16 40 H 0.06 0.71 7.92 -51.93 -0.41 0.30 16 LS Contribution 304.91 15.07 4.59 4.59 Total: -1.00 -29.56 304.91 -7.40 -36.96 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.90 Total: 3.29 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -0.14 Total: -19.75 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.07 Total: -42.01 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.56 -7.40 -36.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308677038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.531 kcal (2) G-P(sol) polarization free energy of solvation -29.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds