Wall clock time and date at job start Mon Mar 30 2020 03:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47252 * 2 1 4 4 N 1.46901 * 109.47123 * 240.00338 * 2 1 3 5 5 C 1.46899 * 111.00047 * 85.28731 * 4 2 1 6 6 C 1.50708 * 109.47043 * 180.02562 * 5 4 2 7 7 H 1.07996 * 119.99854 * 359.97438 * 6 5 4 8 8 C 1.37877 * 119.99818 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99842 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99862 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.46881 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.46694 * 120.00263 * 10 8 6 13 13 H 1.48500 * 109.47236 * 240.00147 * 10 8 6 14 14 C 1.52997 * 109.47409 * 120.00178 * 2 1 3 15 15 C 1.53005 * 117.49759 * 185.25407 * 14 2 1 16 16 C 1.53007 * 117.49522 * 214.97749 * 15 14 2 17 17 C 1.52999 * 117.49966 * 359.97438 * 15 14 2 18 18 C 1.53005 * 60.02869 * 107.47884 * 15 14 2 19 19 C 1.53001 * 117.49880 * 107.50608 * 18 15 14 20 20 C 1.53001 * 117.49562 * 252.51843 * 18 15 14 21 21 H 1.09006 * 109.47091 * 304.48044 * 1 2 3 22 22 H 1.09000 * 109.47658 * 64.47950 * 1 2 3 23 23 H 1.09000 * 109.46732 * 184.48597 * 1 2 3 24 24 H 1.00897 * 111.00422 * 209.24497 * 4 2 1 25 25 H 1.08996 * 109.47183 * 300.00008 * 5 4 2 26 26 H 1.08995 * 109.47202 * 60.00020 * 5 4 2 27 27 H 0.97003 * 119.99477 * 180.02562 * 9 8 6 28 28 H 1.08996 * 115.55253 * 39.58768 * 14 2 1 29 29 H 1.08995 * 109.46877 * 212.24310 * 16 15 14 30 30 H 1.09002 * 109.46662 * 92.24438 * 16 15 14 31 31 H 1.08999 * 109.47270 * 332.24795 * 16 15 14 32 32 H 1.09000 * 109.47025 * 277.97785 * 17 15 14 33 33 H 1.08995 * 109.47043 * 37.97815 * 17 15 14 34 34 H 1.08996 * 109.46703 * 157.97878 * 17 15 14 35 35 H 1.08996 * 109.47660 * 119.28885 * 19 18 15 36 36 H 1.09001 * 109.46775 * 239.28953 * 19 18 15 37 37 H 1.09005 * 109.47088 * 359.28770 * 19 18 15 38 38 H 1.08998 * 109.46884 * 68.05134 * 20 18 15 39 39 H 1.08994 * 109.47032 * 188.04996 * 20 18 15 40 40 H 1.08997 * 109.47113 * 308.04984 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6924 -1.1995 5 6 2.0889 0.2244 -2.3452 6 6 2.5936 -0.5201 -3.5545 7 1 2.8388 -1.5692 -3.4792 8 6 2.7423 0.1382 -4.7568 9 7 2.4442 1.4159 -4.8481 10 14 3.3685 -0.7844 -6.2555 11 1 3.6305 -2.2000 -5.8915 12 1 2.3469 -0.7314 -7.3319 13 1 4.6255 -0.1552 -6.7346 14 6 2.0400 -0.7213 1.2492 15 6 3.5497 -0.7214 1.4979 16 6 4.1607 -1.9715 2.1343 17 6 4.4338 -0.0007 0.4781 18 6 2.6316 0.1381 2.3693 19 6 2.3948 -0.3183 3.8104 20 6 2.6675 1.6524 2.1539 21 1 -0.3633 0.5818 0.8472 22 1 -0.3634 0.4427 -0.9274 23 1 -0.3633 -1.0245 0.0804 24 1 2.9151 -1.1245 -1.0275 25 1 1.0957 0.6225 -2.5525 26 1 2.7681 1.0447 -2.1135 27 1 2.5484 1.8789 -5.6941 28 1 1.4823 -1.6119 1.5385 29 1 5.0099 -1.6853 2.7548 30 1 4.4959 -2.6511 1.3508 31 1 3.4116 -2.4687 2.7505 32 1 4.6158 -0.6570 -0.3730 33 1 3.9318 0.9049 0.1378 34 1 5.3836 0.2632 0.9431 35 1 2.7452 0.4518 4.4976 36 1 1.3296 -0.4880 3.9673 37 1 2.9410 -1.2438 3.9928 38 1 2.2498 1.8902 1.1756 39 1 2.0795 2.1437 2.9291 40 1 3.6986 2.0021 2.2035 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308677038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:28 Heat of formation + Delta-G solvation = -12.020837 kcal Electronic energy + Delta-G solvation = -16485.570743 eV Core-core repulsion = 14106.624847 eV Total energy + Delta-G solvation = -2378.945896 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.02521 -36.91874 -34.68093 -32.23978 -31.42278 -29.68393 -28.12651 -27.95192 -27.02762 -24.30868 -22.39708 -20.22668 -18.57679 -18.43346 -16.88918 -16.72245 -16.07154 -15.46925 -15.21589 -15.00581 -14.39050 -14.09655 -13.68158 -13.54334 -13.33073 -13.14159 -13.10599 -13.01097 -12.92470 -12.82377 -12.67176 -12.63619 -12.58164 -12.34481 -11.99438 -11.60264 -11.42042 -11.17276 -10.65773 -10.36092 -10.08140 -8.98903 -8.22625 -6.33608 1.39420 1.40343 1.54311 2.39055 2.69003 3.10420 3.50914 3.70010 3.78137 3.99098 4.21973 4.23472 4.33708 4.43048 4.59845 4.65011 4.76785 4.79555 4.88471 4.91166 4.96993 5.03882 5.05561 5.08822 5.11153 5.12972 5.18956 5.22595 5.25385 5.30514 5.35022 5.43824 5.53766 5.62742 5.66072 6.05990 6.54030 6.78559 6.95102 7.37712 8.89151 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036725 B = 0.006649 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.240602 B = 4210.182527 C = 4458.787500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.102 3.898 3 H 0.032 0.968 4 N -0.683 5.683 5 C 0.215 3.785 6 C -0.533 4.533 7 H 0.061 0.939 8 C 0.001 3.999 9 N -0.934 5.934 10 Si 0.972 3.028 11 H -0.263 1.263 12 H -0.278 1.278 13 H -0.276 1.276 14 C -0.141 4.141 15 C -0.123 4.123 16 C -0.109 4.109 17 C -0.117 4.117 18 C -0.105 4.105 19 C -0.114 4.114 20 C -0.127 4.127 21 H 0.069 0.931 22 H 0.028 0.972 23 H 0.059 0.941 24 H 0.335 0.665 25 H -0.005 1.005 26 H -0.044 1.044 27 H 0.265 0.735 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.046 0.954 39 H 0.074 0.926 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.941 -3.578 16.704 17.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.007 4.007 3 H 0.050 0.950 4 N -0.316 5.316 5 C 0.087 3.913 6 C -0.571 4.571 7 H 0.079 0.921 8 C -0.197 4.197 9 N -0.575 5.575 10 Si 0.796 3.204 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.202 1.202 14 C -0.159 4.159 15 C -0.123 4.123 16 C -0.166 4.166 17 C -0.174 4.174 18 C -0.106 4.106 19 C -0.171 4.171 20 C -0.184 4.184 21 H 0.088 0.912 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.154 0.846 25 H 0.014 0.986 26 H -0.027 1.027 27 H 0.073 0.927 28 H 0.127 0.873 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.093 0.907 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.310 -3.685 16.416 16.875 hybrid contribution 0.845 0.625 -1.129 1.543 sum 2.156 -3.060 15.287 15.738 Atomic orbital electron populations 1.21673 0.94725 1.01818 1.00292 1.21215 0.95713 0.95161 0.88616 0.95036 1.60637 1.33271 1.33534 1.04120 1.19146 0.93445 0.89948 0.88723 1.21571 1.43466 0.96754 0.95293 0.92055 1.25948 0.95638 0.95751 1.02339 1.70108 1.49903 1.10591 1.26886 0.85298 0.77911 0.78874 0.78298 1.18697 1.20357 1.20203 1.22716 0.95783 1.01352 0.96089 1.21794 0.90971 0.99237 1.00303 1.21300 1.00800 0.94363 1.00098 1.21321 0.99402 0.99124 0.97537 1.21806 1.02465 0.93104 0.93174 1.21437 1.02102 1.01992 0.91561 1.21534 1.01938 0.93169 1.01723 0.91173 0.95286 0.92178 0.84618 0.98644 1.02670 0.92671 0.87289 0.91115 0.92588 0.91097 0.93489 0.94389 0.91048 0.91274 0.91826 0.90979 0.93558 0.90729 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.44 9.44 71.98 0.68 -3.76 16 2 C 0.10 3.80 1.77 44.91 0.08 3.88 16 3 H 0.03 1.29 4.03 -2.39 -0.01 1.28 16 4 N -0.68 -30.90 6.19 -495.59 -3.07 -33.97 16 5 C 0.22 12.00 5.24 85.56 0.45 12.44 16 6 C -0.53 -31.36 9.32 25.60 0.24 -31.12 16 7 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 8 C 0.00 0.07 5.46 84.65 0.46 0.53 16 9 N -0.93 -57.75 13.29 21.45 0.28 -57.46 16 10 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 11 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 C -0.14 -4.12 4.58 -10.77 -0.05 -4.17 16 15 C -0.12 -3.27 2.44 -52.18 -0.13 -3.40 16 16 C -0.11 -2.31 8.72 71.98 0.63 -1.68 16 17 C -0.12 -3.63 7.74 71.98 0.56 -3.07 16 18 C -0.10 -2.54 2.70 -52.16 -0.14 -2.68 16 19 C -0.11 -2.06 9.64 71.98 0.69 -1.36 16 20 C -0.13 -3.19 8.33 71.98 0.60 -2.59 16 21 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 22 H 0.03 1.14 7.38 -2.39 -0.02 1.12 16 23 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 24 H 0.33 14.63 5.73 -89.70 -0.51 14.11 16 25 H 0.00 -0.28 7.39 -2.39 -0.02 -0.29 16 26 H -0.04 -2.66 8.05 -2.39 -0.02 -2.68 16 27 H 0.26 15.26 8.31 -92.71 -0.77 14.48 16 28 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.31 6.62 -2.39 -0.02 1.30 16 32 H 0.05 1.62 6.87 -2.39 -0.02 1.60 16 33 H 0.04 1.35 5.60 -2.39 -0.01 1.33 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.09 8.02 -2.39 -0.02 1.07 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.07 1.17 5.58 -2.38 -0.01 1.15 16 38 H 0.05 1.41 4.88 -2.39 -0.01 1.39 16 39 H 0.07 1.56 8.01 -2.39 -0.02 1.55 16 40 H 0.06 1.46 7.92 -2.39 -0.02 1.44 16 Total: -1.00 -64.78 304.91 3.80 -60.98 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.49 Total: 20.14 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 4.07 Total: -36.98 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -2.78 Total: -91.43 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -64.78 3.80 -60.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308677038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.960 kcal (2) G-P(sol) polarization free energy of solvation -64.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds