Wall clock time and date at job start Mon Mar 30 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 H 1.08993 * 109.46646 * 54.54047 * 3 2 1 5 5 C 1.50700 * 109.47292 * 174.54316 * 3 2 1 6 6 H 1.07999 * 120.00272 * 119.99648 * 5 3 2 7 7 C 1.37874 * 119.99605 * 300.00053 * 5 3 2 8 8 N 1.31506 * 120.00425 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99696 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46826 * 89.99762 * 9 7 5 11 11 H 1.48494 * 109.47158 * 210.00038 * 9 7 5 12 12 H 1.48499 * 109.47296 * 330.00184 * 9 7 5 13 13 N 1.46903 * 109.46769 * 294.54121 * 3 2 1 14 14 C 1.46903 * 110.99699 * 108.01806 * 13 3 2 15 15 H 1.09001 * 109.47509 * 340.46844 * 14 13 3 16 16 C 1.52998 * 109.46948 * 220.46862 * 14 13 3 17 17 C 1.53007 * 109.46927 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47133 * 299.99792 * 16 14 13 19 19 C 1.53002 * 109.47119 * 100.46754 * 14 13 3 20 20 C 1.53000 * 117.49790 * 294.58867 * 19 14 13 21 21 C 1.53007 * 60.03131 * 252.49741 * 20 19 14 22 22 H 1.09000 * 109.47046 * 303.79022 * 1 2 3 23 23 H 1.08994 * 109.47482 * 63.79355 * 1 2 3 24 24 H 1.09002 * 109.47387 * 183.79192 * 1 2 3 25 25 H 1.09007 * 109.46915 * 240.00264 * 2 1 3 26 26 H 1.08995 * 109.47611 * 120.00334 * 2 1 3 27 27 H 0.97007 * 120.00015 * 179.97438 * 8 7 5 28 28 H 1.00899 * 110.99955 * 231.96798 * 13 3 2 29 29 H 1.08999 * 109.47458 * 60.00476 * 16 14 13 30 30 H 1.09000 * 109.47178 * 59.99622 * 17 16 14 31 31 H 1.08999 * 109.46980 * 179.97438 * 17 16 14 32 32 H 1.08992 * 109.47148 * 299.99871 * 17 16 14 33 33 H 1.08999 * 109.47354 * 180.02562 * 18 16 14 34 34 H 1.09006 * 109.47220 * 300.00050 * 18 16 14 35 35 H 1.08998 * 109.47393 * 60.00512 * 18 16 14 36 36 H 1.08999 * 115.55087 * 80.25638 * 19 14 13 37 37 H 1.08998 * 117.50082 * 359.97438 * 20 19 14 38 38 H 1.09000 * 117.49569 * 145.00137 * 20 19 14 39 39 H 1.09000 * 117.49737 * 107.50211 * 21 20 19 40 40 H 1.09000 * 117.49898 * 252.52207 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9837 0.8370 5 6 3.5409 1.4446 0.1351 6 1 4.1521 1.8871 -0.6376 7 6 4.1339 0.8817 1.2452 8 7 3.3898 0.3433 2.1864 9 14 5.9945 0.8837 1.4124 10 1 6.4270 2.1185 2.1149 11 1 6.4227 -0.3053 2.1922 12 1 6.6128 0.8396 0.0630 13 7 1.6609 2.0959 -1.2599 14 6 0.5951 3.0830 -1.0411 15 1 0.0931 2.8724 -0.0967 16 6 -0.4170 3.0029 -2.1856 17 6 -1.5267 4.0315 -1.9580 18 6 0.2876 3.2985 -3.5111 19 6 1.2020 4.4867 -0.9941 20 6 2.1478 4.8090 0.1645 21 6 0.7444 5.4176 0.1316 22 1 -0.3633 0.5715 0.8541 23 1 -0.3634 0.4538 -0.9220 24 1 -0.3634 -1.0254 0.0680 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8070 -0.0531 2.9673 28 1 2.4620 2.5208 -1.7023 29 1 -0.8494 2.0029 -2.2190 30 1 -1.0940 5.0314 -1.9247 31 1 -2.2475 3.9748 -2.7736 32 1 -2.0287 3.8214 -1.0136 33 1 -0.4336 3.2420 -4.3265 34 1 0.7199 4.2987 -3.4777 35 1 1.0783 2.5661 -3.6736 36 1 1.4206 4.9370 -1.9624 37 1 2.3374 4.0212 0.8936 38 1 2.9885 5.4715 -0.0415 39 1 0.0110 5.0300 0.8388 40 1 0.6619 6.4803 -0.0965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324562850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:12 Heat of formation + Delta-G solvation = 1.615631 kcal Electronic energy + Delta-G solvation = -16846.935217 eV Core-core repulsion = 14468.580643 eV Total energy + Delta-G solvation = -2378.354575 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.60976 -35.13443 -34.29812 -31.87836 -30.36451 -26.98298 -26.72309 -24.24359 -22.48081 -21.77650 -21.42631 -19.35143 -18.55408 -16.53495 -15.39201 -14.83790 -14.70781 -13.93597 -13.59076 -13.18053 -13.02870 -12.65577 -12.23207 -12.06413 -11.72833 -11.59763 -11.27408 -11.06793 -10.98848 -10.87789 -10.80345 -10.60259 -10.42422 -10.20980 -9.89556 -9.73759 -9.65142 -9.50693 -9.17943 -8.78012 -8.38046 -7.11035 -5.99239 -4.06784 3.29038 3.36523 3.39704 4.30814 4.42342 5.08336 5.18609 5.30073 5.40485 5.53913 5.54903 5.61945 5.83133 5.92148 5.97485 6.05820 6.13331 6.23683 6.28111 6.40259 6.42587 6.46211 6.51399 6.60553 6.67046 6.70851 6.78525 6.86983 6.90993 7.17282 7.23736 7.54464 7.65402 7.81675 8.04069 8.31268 8.48052 8.77362 9.08832 9.59142 11.04673 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.009098 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.647252 B = 3076.803906 C = 3519.518066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.220 3.780 4 H 0.012 0.988 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.679 5.679 14 C 0.126 3.874 15 H 0.064 0.936 16 C -0.081 4.081 17 C -0.145 4.145 18 C -0.140 4.140 19 C -0.170 4.170 20 C -0.170 4.170 21 C -0.187 4.187 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.025 0.975 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.260 0.740 28 H 0.333 0.667 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.065 0.935 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.176 6.596 -5.791 10.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.029 0.971 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.309 5.309 14 C 0.015 3.985 15 H 0.082 0.918 16 C -0.100 4.100 17 C -0.203 4.203 18 C -0.197 4.197 19 C -0.189 4.189 20 C -0.207 4.207 21 C -0.225 4.225 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.151 0.849 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.582 5.966 -5.794 10.606 hybrid contribution 1.548 0.744 0.675 1.846 sum -5.033 6.710 -5.119 9.827 Atomic orbital electron populations 1.21789 0.99662 0.98478 0.99885 1.21539 0.91500 0.99816 1.01579 1.19183 0.93785 0.90996 0.84852 0.97077 1.21518 0.91814 1.37824 1.04951 0.92557 1.24902 0.97813 0.95217 0.95848 1.69887 1.34659 1.38642 1.09371 0.86640 0.86118 0.77414 0.78071 1.20881 1.21297 1.19966 1.60823 1.12472 1.30007 1.27562 1.21219 0.93021 0.87378 0.96856 0.91817 1.21091 0.94949 0.98691 0.95300 1.21840 0.98184 0.99673 1.00558 1.21779 1.00444 1.01290 0.96228 1.23098 1.04168 0.98025 0.93634 1.22980 0.92160 1.03393 1.02208 1.22914 0.98989 0.97885 1.02680 0.94800 0.93578 0.95591 0.94710 0.89506 0.93013 0.84922 0.91152 0.92716 0.93632 0.93322 0.94200 0.93488 0.91598 0.88397 0.87267 0.89831 0.89440 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.41 37.16 0.35 -2.57 16 2 C -0.11 -2.55 5.45 -26.73 -0.15 -2.69 16 3 C 0.22 5.28 1.57 -68.86 -0.11 5.17 16 4 H 0.01 0.31 6.41 -51.93 -0.33 -0.03 16 5 C -0.52 -13.75 8.60 -34.44 -0.30 -14.05 16 6 H 0.06 1.48 7.36 -52.49 -0.39 1.09 16 7 C 0.06 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -24.86 11.29 55.43 0.63 -24.24 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 N -0.68 -13.75 5.05 -100.95 -0.51 -14.26 16 14 C 0.13 2.20 1.36 -67.71 -0.09 2.11 16 15 H 0.06 1.25 6.91 -51.93 -0.36 0.89 16 16 C -0.08 -1.23 2.93 -90.62 -0.27 -1.49 16 17 C -0.14 -1.89 8.94 37.16 0.33 -1.56 16 18 C -0.14 -1.96 8.78 37.16 0.33 -1.64 16 19 C -0.17 -2.72 3.49 -90.58 -0.32 -3.04 16 20 C -0.17 -2.96 10.11 -26.73 -0.27 -3.23 16 21 C -0.19 -2.81 9.88 -26.69 -0.26 -3.07 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.90 6.29 -51.93 -0.33 0.57 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.03 0.85 8.14 -51.92 -0.42 0.42 16 26 H 0.09 2.34 5.94 -51.93 -0.31 2.03 16 27 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.33 6.87 7.35 -39.29 -0.29 6.58 16 29 H 0.07 1.15 6.93 -51.93 -0.36 0.79 16 30 H 0.05 0.70 6.96 -51.93 -0.36 0.33 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.62 6.19 -51.93 -0.32 0.30 16 35 H 0.06 1.01 7.60 -51.93 -0.39 0.61 16 36 H 0.10 1.48 6.15 -51.93 -0.32 1.16 16 37 H 0.11 2.29 6.94 -51.93 -0.36 1.93 16 38 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 39 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 40 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 305.59 15.07 4.61 4.61 Total: -1.00 -26.22 305.59 -8.20 -34.42 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.06 Total: 7.86 kcal Atomic # 6 Polarization: -23.57 SS G_CDS: -0.84 Total: -24.42 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.12 Total: -38.50 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.22 -8.20 -34.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324562850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.033 kcal (2) G-P(sol) polarization free energy of solvation -26.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds