Wall clock time and date at job start Mon Mar 30 2020 02:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47271 * 2 1 4 4 H 1.08993 * 109.46646 * 54.54047 * 3 2 1 5 5 C 1.50700 * 109.47292 * 174.54316 * 3 2 1 6 6 H 1.07999 * 120.00272 * 119.99648 * 5 3 2 7 7 C 1.37874 * 119.99605 * 300.00053 * 5 3 2 8 8 N 1.31506 * 120.00425 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99696 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46826 * 89.99762 * 9 7 5 11 11 H 1.48494 * 109.47158 * 210.00038 * 9 7 5 12 12 H 1.48499 * 109.47296 * 330.00184 * 9 7 5 13 13 N 1.46903 * 109.46769 * 294.54121 * 3 2 1 14 14 C 1.46903 * 110.99699 * 108.01806 * 13 3 2 15 15 H 1.09001 * 109.47509 * 340.46844 * 14 13 3 16 16 C 1.52998 * 109.46948 * 220.46862 * 14 13 3 17 17 C 1.53007 * 109.46927 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47133 * 299.99792 * 16 14 13 19 19 C 1.53002 * 109.47119 * 100.46754 * 14 13 3 20 20 C 1.53000 * 117.49790 * 294.58867 * 19 14 13 21 21 C 1.53007 * 60.03131 * 252.49741 * 20 19 14 22 22 H 1.09000 * 109.47046 * 303.79022 * 1 2 3 23 23 H 1.08994 * 109.47482 * 63.79355 * 1 2 3 24 24 H 1.09002 * 109.47387 * 183.79192 * 1 2 3 25 25 H 1.09007 * 109.46915 * 240.00264 * 2 1 3 26 26 H 1.08995 * 109.47611 * 120.00334 * 2 1 3 27 27 H 0.97007 * 120.00015 * 179.97438 * 8 7 5 28 28 H 1.00899 * 110.99955 * 231.96798 * 13 3 2 29 29 H 1.08999 * 109.47458 * 60.00476 * 16 14 13 30 30 H 1.09000 * 109.47178 * 59.99622 * 17 16 14 31 31 H 1.08999 * 109.46980 * 179.97438 * 17 16 14 32 32 H 1.08992 * 109.47148 * 299.99871 * 17 16 14 33 33 H 1.08999 * 109.47354 * 180.02562 * 18 16 14 34 34 H 1.09006 * 109.47220 * 300.00050 * 18 16 14 35 35 H 1.08998 * 109.47393 * 60.00512 * 18 16 14 36 36 H 1.08999 * 115.55087 * 80.25638 * 19 14 13 37 37 H 1.08998 * 117.50082 * 359.97438 * 20 19 14 38 38 H 1.09000 * 117.49569 * 145.00137 * 20 19 14 39 39 H 1.09000 * 117.49737 * 107.50211 * 21 20 19 40 40 H 1.09000 * 117.49898 * 252.52207 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5990 1.9837 0.8370 5 6 3.5409 1.4446 0.1351 6 1 4.1521 1.8871 -0.6376 7 6 4.1339 0.8817 1.2452 8 7 3.3898 0.3433 2.1864 9 14 5.9945 0.8837 1.4124 10 1 6.4270 2.1185 2.1149 11 1 6.4227 -0.3053 2.1922 12 1 6.6128 0.8396 0.0630 13 7 1.6609 2.0959 -1.2599 14 6 0.5951 3.0830 -1.0411 15 1 0.0931 2.8724 -0.0967 16 6 -0.4170 3.0029 -2.1856 17 6 -1.5267 4.0315 -1.9580 18 6 0.2876 3.2985 -3.5111 19 6 1.2020 4.4867 -0.9941 20 6 2.1478 4.8090 0.1645 21 6 0.7444 5.4176 0.1316 22 1 -0.3633 0.5715 0.8541 23 1 -0.3634 0.4538 -0.9220 24 1 -0.3634 -1.0254 0.0680 25 1 1.8933 -0.5138 -0.8901 26 1 1.8934 -0.5138 0.8899 27 1 3.8070 -0.0531 2.9673 28 1 2.4620 2.5208 -1.7023 29 1 -0.8494 2.0029 -2.2190 30 1 -1.0940 5.0314 -1.9247 31 1 -2.2475 3.9748 -2.7736 32 1 -2.0287 3.8214 -1.0136 33 1 -0.4336 3.2420 -4.3265 34 1 0.7199 4.2987 -3.4777 35 1 1.0783 2.5661 -3.6736 36 1 1.4206 4.9370 -1.9624 37 1 2.3374 4.0212 0.8936 38 1 2.9885 5.4715 -0.0415 39 1 0.0110 5.0300 0.8388 40 1 0.6619 6.4803 -0.0965 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324562850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:12 Heat of formation + Delta-G solvation = -12.063689 kcal Electronic energy + Delta-G solvation = -16847.528397 eV Core-core repulsion = 14468.580643 eV Total energy + Delta-G solvation = -2378.947754 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03858 -36.89155 -35.60848 -33.82656 -32.07842 -28.77830 -27.83694 -25.92285 -24.29921 -23.08552 -22.71517 -21.25316 -19.97146 -18.45548 -16.87912 -16.56886 -16.21485 -15.66578 -15.02723 -14.58859 -14.49597 -14.32320 -13.82524 -13.46155 -13.28259 -13.07452 -12.89118 -12.71984 -12.59039 -12.51905 -12.33325 -12.10981 -12.04692 -11.59918 -11.48593 -11.31178 -11.16164 -11.06286 -10.78252 -10.65452 -10.43895 -8.82072 -8.06385 -6.20864 1.39251 1.41355 1.50453 2.42371 2.97337 3.19932 3.73764 3.80849 4.06626 4.26898 4.35381 4.43579 4.50121 4.58278 4.61041 4.74073 4.82029 4.85863 4.89023 4.98492 5.04231 5.08135 5.18077 5.21297 5.27640 5.33521 5.37135 5.43932 5.44871 5.60234 5.64686 5.69336 5.74386 5.81219 6.04852 6.32720 6.57312 6.92213 7.16519 7.48980 8.95777 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027644 B = 0.009098 C = 0.007954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.647252 B = 3076.803906 C = 3519.518066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.232 3.768 4 H -0.022 1.022 5 C -0.532 4.532 6 H 0.054 0.946 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.950 3.050 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.673 5.673 14 C 0.127 3.873 15 H 0.037 0.963 16 C -0.077 4.077 17 C -0.139 4.139 18 C -0.135 4.135 19 C -0.165 4.165 20 C -0.190 4.190 21 C -0.163 4.163 22 H 0.026 0.974 23 H 0.058 0.942 24 H 0.043 0.957 25 H 0.026 0.974 26 H 0.056 0.944 27 H 0.259 0.741 28 H 0.331 0.669 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.118 0.882 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 7.983 -7.310 12.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C 0.124 3.876 4 H -0.004 1.004 5 C -0.571 4.571 6 H 0.072 0.928 7 C -0.183 4.183 8 N -0.554 5.554 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.194 1.194 13 N -0.302 5.302 14 C 0.017 3.983 15 H 0.056 0.944 16 C -0.097 4.097 17 C -0.197 4.197 18 C -0.193 4.193 19 C -0.184 4.184 20 C -0.228 4.228 21 C -0.200 4.200 22 H 0.045 0.955 23 H 0.077 0.923 24 H 0.062 0.938 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.149 0.851 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.135 0.865 37 H 0.083 0.917 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.133 7.362 -7.326 12.600 hybrid contribution 1.688 0.320 1.154 2.070 sum -5.445 7.682 -6.172 11.259 Atomic orbital electron populations 1.21629 0.97009 0.99633 1.00185 1.21410 0.93890 0.99315 0.99574 1.18888 0.92489 0.90949 0.85322 1.00421 1.21822 0.93144 1.37315 1.04815 0.92781 1.25627 1.01861 0.95101 0.95714 1.70023 1.36194 1.39442 1.09774 0.85684 0.81292 0.77303 0.78095 1.20528 1.21192 1.19361 1.60791 1.12784 1.31237 1.25364 1.21229 0.92512 0.87665 0.96881 0.94449 1.21037 0.94870 0.98950 0.94794 1.21786 0.97651 0.99090 1.01144 1.21729 1.00319 1.01257 0.95949 1.23057 1.03463 0.97486 0.94370 1.22820 0.94177 1.03316 1.02450 1.22974 0.96608 0.99225 1.01212 0.95466 0.92349 0.93836 0.95474 0.92557 0.93168 0.85148 0.92443 0.91936 0.91716 0.93747 0.92279 0.92486 0.93275 0.86455 0.91724 0.88633 0.89971 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.28 9.41 71.98 0.68 -4.61 16 2 C -0.10 -5.09 5.45 30.59 0.17 -4.93 16 3 C 0.23 11.52 1.57 44.17 0.07 11.59 16 4 H -0.02 -1.22 6.41 -2.39 -0.02 -1.24 16 5 C -0.53 -28.72 8.60 25.60 0.22 -28.50 16 6 H 0.05 2.88 7.36 -2.91 -0.02 2.86 16 7 C 0.02 0.89 5.29 84.66 0.45 1.34 16 8 N -0.91 -52.89 11.29 21.44 0.24 -52.65 16 9 Si 0.95 43.81 29.54 68.60 2.03 45.84 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 13 N -0.67 -27.49 5.05 -473.30 -2.39 -29.88 16 14 C 0.13 4.40 1.36 44.92 0.06 4.46 16 15 H 0.04 1.49 6.91 -2.39 -0.02 1.48 16 16 C -0.08 -2.19 2.93 -10.79 -0.03 -2.22 16 17 C -0.14 -3.22 8.94 71.98 0.64 -2.58 16 18 C -0.14 -3.42 8.78 71.98 0.63 -2.79 16 19 C -0.16 -5.03 3.49 -10.77 -0.04 -5.07 16 20 C -0.19 -6.59 10.11 30.60 0.31 -6.29 16 21 C -0.16 -4.57 9.88 30.62 0.30 -4.27 16 22 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 2.26 6.29 -2.39 -0.02 2.24 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.06 3.14 5.94 -2.39 -0.01 3.13 16 27 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 28 H 0.33 13.69 7.35 -89.69 -0.66 13.03 16 29 H 0.06 1.78 6.93 -2.39 -0.02 1.76 16 30 H 0.06 1.36 6.96 -2.39 -0.02 1.34 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.32 6.19 -2.38 -0.01 1.31 16 35 H 0.05 1.41 7.60 -2.39 -0.02 1.39 16 36 H 0.12 3.19 6.15 -2.39 -0.01 3.17 16 37 H 0.06 2.85 6.94 -2.39 -0.02 2.83 16 38 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.08 2.41 8.08 -2.39 -0.02 2.39 16 40 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -57.52 305.59 3.68 -53.85 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.34 Total: 26.70 kcal Atomic # 6 Polarization: -47.33 SS G_CDS: 3.46 Total: -43.87 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -2.15 Total: -82.52 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -57.52 3.68 -53.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324562850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.786 kcal (2) G-P(sol) polarization free energy of solvation -57.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds