Wall clock time and date at job start Mon Mar 30 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46988 * 2 1 4 4 H 1.08999 * 109.47047 * 307.44083 * 3 2 1 5 5 C 1.50699 * 109.46969 * 187.43948 * 3 2 1 6 6 H 1.07995 * 120.00060 * 239.99719 * 5 3 2 7 7 C 1.37878 * 120.00117 * 59.99836 * 5 3 2 8 8 N 1.31512 * 120.00133 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99687 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.46837 * 269.99597 * 9 7 5 11 11 H 1.48495 * 109.47534 * 29.99806 * 9 7 5 12 12 H 1.48503 * 109.47157 * 150.00257 * 9 7 5 13 13 N 1.46899 * 109.47142 * 67.44193 * 3 2 1 14 14 C 1.46898 * 111.00456 * 43.49581 * 13 3 2 15 15 C 1.52999 * 109.47219 * 159.41032 * 14 13 3 16 16 C 1.46905 * 110.99699 * 279.53964 * 13 3 2 17 17 H 1.08990 * 109.47147 * 70.55465 * 16 13 3 18 18 C 1.53005 * 109.47154 * 310.55345 * 16 13 3 19 19 C 1.52997 * 109.47018 * 190.55762 * 16 13 3 20 20 C 1.53004 * 117.49741 * 241.53507 * 19 16 13 21 21 C 1.53002 * 117.50028 * 172.91116 * 19 16 13 22 22 H 1.08994 * 109.46989 * 41.14265 * 1 2 3 23 23 H 1.09003 * 109.47114 * 161.14430 * 1 2 3 24 24 H 1.09005 * 109.47403 * 281.14383 * 1 2 3 25 25 H 1.08995 * 109.46967 * 239.99613 * 2 1 3 26 26 H 1.09003 * 109.46496 * 119.99744 * 2 1 3 27 27 H 0.96995 * 119.99746 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.46498 * 279.40989 * 14 13 3 29 29 H 1.08996 * 109.47202 * 39.40724 * 14 13 3 30 30 H 1.09005 * 109.46848 * 192.78205 * 15 14 13 31 31 H 1.08999 * 109.47186 * 312.78284 * 15 14 13 32 32 H 1.09004 * 109.46804 * 72.78311 * 15 14 13 33 33 H 1.09006 * 109.47048 * 190.75653 * 18 16 13 34 34 H 1.09003 * 109.47229 * 310.75341 * 18 16 13 35 35 H 1.09000 * 109.46937 * 70.75623 * 18 16 13 36 36 H 1.08997 * 115.55267 * 27.23892 * 19 16 13 37 37 H 1.08991 * 117.49999 * 359.97438 * 20 19 16 38 38 H 1.09004 * 117.49715 * 145.02256 * 20 19 16 39 39 H 1.09002 * 117.49778 * 214.97418 * 21 19 16 40 40 H 1.08997 * 117.49864 * 359.97340 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5721 1.9933 -0.8159 5 6 3.5357 1.4465 -0.1840 6 1 4.1718 1.8802 0.5734 7 6 4.0921 0.8965 -1.3192 8 7 5.3975 0.8995 -1.4796 9 14 2.9919 0.1469 -2.6296 10 1 2.7821 -1.2934 -2.3352 11 1 1.6822 0.8467 -2.6360 12 1 3.6368 0.2914 -3.9595 13 7 1.7023 2.0813 1.2790 14 6 1.9705 1.1778 2.4058 15 6 2.1087 1.9942 3.6924 16 6 0.3048 2.5341 1.2884 17 1 -0.3571 1.6692 1.3283 18 6 0.0200 3.3361 0.0169 19 6 0.0634 3.4181 2.5137 20 6 -0.9723 2.9428 3.5346 21 6 -1.2886 4.1267 2.6183 22 1 -0.3633 0.7739 -0.6761 23 1 -0.3633 -0.9725 -0.3321 24 1 -0.3634 0.1986 1.0083 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 5.7888 0.5128 -2.2784 28 1 1.1461 0.4722 2.5099 29 1 2.8953 0.6313 2.2212 30 1 2.5270 1.3654 4.4784 31 1 2.7698 2.8425 3.5152 32 1 1.1276 2.3561 4.0001 33 1 -0.9471 3.8307 0.1083 34 1 0.7994 4.0853 -0.1224 35 1 0.0047 2.6638 -0.8409 36 1 0.9387 3.9456 2.8926 37 1 -1.4820 2.0007 3.3332 38 1 -0.7784 3.1577 4.5855 39 1 -1.3027 5.1202 3.0665 40 1 -2.0059 3.9634 1.8141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324779871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:50 Heat of formation + Delta-G solvation = 44.089992 kcal Electronic energy + Delta-G solvation = -17212.189976 eV Core-core repulsion = 14835.677228 eV Total energy + Delta-G solvation = -2376.512748 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.26568 -36.40342 -32.79317 -31.83456 -31.05162 -28.65681 -26.59205 -23.78524 -22.48313 -22.29901 -21.67624 -19.55097 -18.86352 -16.73660 -15.55644 -15.45499 -14.62424 -14.27869 -14.13145 -13.77151 -12.92311 -12.67101 -12.34404 -12.17819 -11.91228 -11.72008 -11.51076 -11.37727 -11.23371 -11.09014 -10.94096 -10.65789 -10.46387 -10.31922 -10.20803 -9.83203 -9.63043 -9.36650 -9.29015 -8.93767 -8.51083 -7.16971 -6.01653 -3.97831 3.27002 3.37804 3.39837 4.02941 4.42769 4.65070 5.03722 5.15061 5.24949 5.34153 5.55243 5.70051 5.76303 5.77952 5.81640 5.87461 5.92492 5.99029 6.03108 6.06199 6.15280 6.23956 6.26659 6.44373 6.46144 6.48814 6.55207 6.60886 6.68820 6.78956 6.82472 6.89240 6.98614 7.25421 7.75293 8.07762 8.21734 8.75349 9.10058 9.61529 11.11792 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033852 B = 0.009569 C = 0.008812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.932706 B = 2925.521170 C = 3176.615686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.165 4.165 3 C 0.180 3.820 4 H 0.048 0.952 5 C -0.494 4.494 6 H 0.081 0.919 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.882 3.118 10 H -0.281 1.281 11 H -0.267 1.267 12 H -0.298 1.298 13 N -0.510 5.510 14 C 0.060 3.940 15 C -0.158 4.158 16 C 0.094 3.906 17 H 0.049 0.951 18 C -0.147 4.147 19 C -0.126 4.126 20 C -0.188 4.188 21 C -0.186 4.186 22 H 0.052 0.948 23 H 0.038 0.962 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.262 0.738 28 H 0.020 0.980 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.113 0.887 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 2.210 6.770 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.204 4.204 3 C 0.073 3.927 4 H 0.065 0.935 5 C -0.533 4.533 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.541 5.541 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.192 1.192 12 H -0.225 1.225 13 N -0.234 5.234 14 C -0.068 4.068 15 C -0.215 4.215 16 C -0.015 4.015 17 H 0.067 0.933 18 C -0.204 4.204 19 C -0.144 4.144 20 C -0.225 4.225 21 C -0.224 4.224 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.131 0.869 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.028 2.583 6.695 14.006 hybrid contribution -0.989 -1.319 -0.877 1.867 sum -13.016 1.264 5.818 14.313 Atomic orbital electron populations 1.22230 0.98322 1.00393 1.00847 1.22711 0.93318 1.02651 1.01699 1.19992 0.97160 0.87812 0.87776 0.93452 1.20988 0.89298 1.37399 1.05567 0.90097 1.24925 0.94727 0.95962 0.97744 1.69882 1.09884 1.46215 1.28086 0.86954 0.81130 0.79567 0.81095 1.20855 1.19215 1.22542 1.62184 1.17678 1.39906 1.03617 1.21935 1.00447 0.93745 0.90680 1.22180 1.01975 1.00657 0.96728 1.21522 0.91354 0.95717 0.92865 0.93318 1.21987 1.00872 1.00568 0.97009 1.22555 0.92679 1.01509 0.97670 1.23024 1.04723 0.98506 0.96292 1.23004 1.00317 0.96516 1.02547 0.92928 0.94262 0.92711 0.92993 0.91788 0.92776 0.96199 0.90155 0.94045 0.92169 0.92001 0.93195 0.91434 0.92443 0.86863 0.89439 0.89304 0.89326 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 8.34 37.16 0.31 -2.55 16 2 C -0.16 -3.54 4.39 -26.73 -0.12 -3.65 16 3 C 0.18 4.15 1.26 -68.87 -0.09 4.06 16 4 H 0.05 1.13 4.27 -51.93 -0.22 0.91 16 5 C -0.49 -13.74 8.59 -34.44 -0.30 -14.03 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 7 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 8 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 9 Si 0.88 21.94 24.42 -169.99 -4.15 17.79 16 10 H -0.28 -6.87 6.81 56.52 0.39 -6.49 16 11 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 12 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 13 N -0.51 -10.24 4.25 -220.10 -0.94 -11.17 16 14 C 0.06 1.12 4.09 -3.83 -0.02 1.11 16 15 C -0.16 -2.51 8.64 37.16 0.32 -2.19 16 16 C 0.09 1.57 1.64 -67.71 -0.11 1.46 16 17 H 0.05 0.81 4.04 -51.93 -0.21 0.60 16 18 C -0.15 -2.43 8.05 37.16 0.30 -2.13 16 19 C -0.13 -1.81 3.30 -90.62 -0.30 -2.11 16 20 C -0.19 -2.30 8.68 -26.73 -0.23 -2.53 16 21 C -0.19 -2.24 9.57 -26.73 -0.26 -2.50 16 22 H 0.05 0.92 6.01 -51.93 -0.31 0.61 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.05 0.90 5.00 -51.93 -0.26 0.64 16 25 H 0.05 1.21 3.22 -51.93 -0.17 1.04 16 26 H 0.06 1.36 6.00 -51.93 -0.31 1.04 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.02 0.35 6.32 -51.92 -0.33 0.03 16 29 H 0.08 1.71 6.81 -51.93 -0.35 1.35 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.02 7.99 -51.93 -0.42 0.60 16 32 H 0.06 0.88 4.10 -51.93 -0.21 0.67 16 33 H 0.05 0.69 6.51 -51.93 -0.34 0.35 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.00 5.00 -51.93 -0.26 0.74 16 36 H 0.11 1.75 6.85 -51.93 -0.36 1.39 16 37 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16 38 H 0.09 0.99 8.01 -51.93 -0.42 0.57 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.09 1.05 7.12 -51.93 -0.37 0.68 16 LS Contribution 279.29 15.07 4.21 4.21 Total: -1.00 -28.95 279.29 -6.93 -35.88 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.24 Total: 3.36 kcal Atomic # 6 Polarization: -22.64 SS G_CDS: -0.58 Total: -23.22 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: -0.16 Total: -38.02 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.15 Total: 17.79 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.95 -6.93 -35.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324779871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.969 kcal (2) G-P(sol) polarization free energy of solvation -28.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds