Wall clock time and date at job start Mon Mar 30 2020 02:42:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53001 * 109.46988 * 2 1
4 4 H 1.08999 * 109.47047 * 307.44083 * 3 2 1
5 5 C 1.50699 * 109.46969 * 187.43948 * 3 2 1
6 6 H 1.07995 * 120.00060 * 239.99719 * 5 3 2
7 7 C 1.37878 * 120.00117 * 59.99836 * 5 3 2
8 8 N 1.31512 * 120.00133 * 180.02562 * 7 5 3
9 9 Si 1.86803 * 119.99687 * 0.02562 * 7 5 3
10 10 H 1.48501 * 109.46837 * 269.99597 * 9 7 5
11 11 H 1.48495 * 109.47534 * 29.99806 * 9 7 5
12 12 H 1.48503 * 109.47157 * 150.00257 * 9 7 5
13 13 N 1.46899 * 109.47142 * 67.44193 * 3 2 1
14 14 C 1.46898 * 111.00456 * 43.49581 * 13 3 2
15 15 C 1.52999 * 109.47219 * 159.41032 * 14 13 3
16 16 C 1.46905 * 110.99699 * 279.53964 * 13 3 2
17 17 H 1.08990 * 109.47147 * 70.55465 * 16 13 3
18 18 C 1.53005 * 109.47154 * 310.55345 * 16 13 3
19 19 C 1.52997 * 109.47018 * 190.55762 * 16 13 3
20 20 C 1.53004 * 117.49741 * 241.53507 * 19 16 13
21 21 C 1.53002 * 117.50028 * 172.91116 * 19 16 13
22 22 H 1.08994 * 109.46989 * 41.14265 * 1 2 3
23 23 H 1.09003 * 109.47114 * 161.14430 * 1 2 3
24 24 H 1.09005 * 109.47403 * 281.14383 * 1 2 3
25 25 H 1.08995 * 109.46967 * 239.99613 * 2 1 3
26 26 H 1.09003 * 109.46496 * 119.99744 * 2 1 3
27 27 H 0.96995 * 119.99746 * 180.02562 * 8 7 5
28 28 H 1.09007 * 109.46498 * 279.40989 * 14 13 3
29 29 H 1.08996 * 109.47202 * 39.40724 * 14 13 3
30 30 H 1.09005 * 109.46848 * 192.78205 * 15 14 13
31 31 H 1.08999 * 109.47186 * 312.78284 * 15 14 13
32 32 H 1.09004 * 109.46804 * 72.78311 * 15 14 13
33 33 H 1.09006 * 109.47048 * 190.75653 * 18 16 13
34 34 H 1.09003 * 109.47229 * 310.75341 * 18 16 13
35 35 H 1.09000 * 109.46937 * 70.75623 * 18 16 13
36 36 H 1.08997 * 115.55267 * 27.23892 * 19 16 13
37 37 H 1.08991 * 117.49999 * 359.97438 * 20 19 16
38 38 H 1.09004 * 117.49715 * 145.02256 * 20 19 16
39 39 H 1.09002 * 117.49778 * 214.97418 * 21 19 16
40 40 H 1.08997 * 117.49864 * 359.97340 * 21 19 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5721 1.9933 -0.8159
5 6 3.5357 1.4465 -0.1840
6 1 4.1718 1.8802 0.5734
7 6 4.0921 0.8965 -1.3192
8 7 5.3975 0.8995 -1.4796
9 14 2.9919 0.1469 -2.6296
10 1 2.7821 -1.2934 -2.3352
11 1 1.6822 0.8467 -2.6360
12 1 3.6368 0.2914 -3.9595
13 7 1.7023 2.0813 1.2790
14 6 1.9705 1.1778 2.4058
15 6 2.1087 1.9942 3.6924
16 6 0.3048 2.5341 1.2884
17 1 -0.3571 1.6692 1.3283
18 6 0.0200 3.3361 0.0169
19 6 0.0634 3.4181 2.5137
20 6 -0.9723 2.9428 3.5346
21 6 -1.2886 4.1267 2.6183
22 1 -0.3633 0.7739 -0.6761
23 1 -0.3633 -0.9725 -0.3321
24 1 -0.3634 0.1986 1.0083
25 1 1.8933 -0.5139 -0.8899
26 1 1.8933 -0.5138 0.8901
27 1 5.7888 0.5128 -2.2784
28 1 1.1461 0.4722 2.5099
29 1 2.8953 0.6313 2.2212
30 1 2.5270 1.3654 4.4784
31 1 2.7698 2.8425 3.5152
32 1 1.1276 2.3561 4.0001
33 1 -0.9471 3.8307 0.1083
34 1 0.7994 4.0853 -0.1224
35 1 0.0047 2.6638 -0.8409
36 1 0.9387 3.9456 2.8926
37 1 -1.4820 2.0007 3.3332
38 1 -0.7784 3.1577 4.5855
39 1 -1.3027 5.1202 3.0665
40 1 -2.0059 3.9634 1.8141
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000324779871.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:42:50
Heat of formation + Delta-G solvation = 44.089992 kcal
Electronic energy + Delta-G solvation = -17212.189976 eV
Core-core repulsion = 14835.677228 eV
Total energy + Delta-G solvation = -2376.512748 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-39.26568 -36.40342 -32.79317 -31.83456 -31.05162 -28.65681 -26.59205 -23.78524
-22.48313 -22.29901 -21.67624 -19.55097 -18.86352 -16.73660 -15.55644 -15.45499
-14.62424 -14.27869 -14.13145 -13.77151 -12.92311 -12.67101 -12.34404 -12.17819
-11.91228 -11.72008 -11.51076 -11.37727 -11.23371 -11.09014 -10.94096 -10.65789
-10.46387 -10.31922 -10.20803 -9.83203 -9.63043 -9.36650 -9.29015 -8.93767
-8.51083 -7.16971 -6.01653 -3.97831 3.27002 3.37804 3.39837 4.02941
4.42769 4.65070 5.03722 5.15061 5.24949 5.34153 5.55243 5.70051
5.76303 5.77952 5.81640 5.87461 5.92492 5.99029 6.03108 6.06199
6.15280 6.23956 6.26659 6.44373 6.46144 6.48814 6.55207 6.60886
6.68820 6.78956 6.82472 6.89240 6.98614 7.25421 7.75293 8.07762
8.21734 8.75349 9.10058 9.61529 11.11792
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.033852 B = 0.009569 C = 0.008812
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 826.932706 B = 2925.521170 C = 3176.615686
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.161 4.161
2 C -0.165 4.165
3 C 0.180 3.820
4 H 0.048 0.952
5 C -0.494 4.494
6 H 0.081 0.919
7 C 0.067 3.933
8 N -0.902 5.902
9 Si 0.882 3.118
10 H -0.281 1.281
11 H -0.267 1.267
12 H -0.298 1.298
13 N -0.510 5.510
14 C 0.060 3.940
15 C -0.158 4.158
16 C 0.094 3.906
17 H 0.049 0.951
18 C -0.147 4.147
19 C -0.126 4.126
20 C -0.188 4.188
21 C -0.186 4.186
22 H 0.052 0.948
23 H 0.038 0.962
24 H 0.054 0.946
25 H 0.052 0.948
26 H 0.063 0.937
27 H 0.262 0.738
28 H 0.020 0.980
29 H 0.080 0.920
30 H 0.040 0.960
31 H 0.059 0.941
32 H 0.061 0.939
33 H 0.049 0.951
34 H 0.067 0.933
35 H 0.057 0.943
36 H 0.113 0.887
37 H 0.087 0.913
38 H 0.089 0.911
39 H 0.088 0.912
40 H 0.090 0.910
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.488 2.210 6.770 14.375
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C -0.204 4.204
3 C 0.073 3.927
4 H 0.065 0.935
5 C -0.533 4.533
6 H 0.099 0.901
7 C -0.134 4.134
8 N -0.541 5.541
9 Si 0.713 3.287
10 H -0.209 1.209
11 H -0.192 1.192
12 H -0.225 1.225
13 N -0.234 5.234
14 C -0.068 4.068
15 C -0.215 4.215
16 C -0.015 4.015
17 H 0.067 0.933
18 C -0.204 4.204
19 C -0.144 4.144
20 C -0.225 4.225
21 C -0.224 4.224
22 H 0.071 0.929
23 H 0.057 0.943
24 H 0.073 0.927
25 H 0.070 0.930
26 H 0.082 0.918
27 H 0.072 0.928
28 H 0.038 0.962
29 H 0.098 0.902
30 H 0.060 0.940
31 H 0.078 0.922
32 H 0.080 0.920
33 H 0.068 0.932
34 H 0.086 0.914
35 H 0.076 0.924
36 H 0.131 0.869
37 H 0.106 0.894
38 H 0.107 0.893
39 H 0.107 0.893
40 H 0.108 0.892
Dipole moment (debyes) X Y Z Total
from point charges -12.028 2.583 6.695 14.006
hybrid contribution -0.989 -1.319 -0.877 1.867
sum -13.016 1.264 5.818 14.313
Atomic orbital electron populations
1.22230 0.98322 1.00393 1.00847 1.22711 0.93318 1.02651 1.01699
1.19992 0.97160 0.87812 0.87776 0.93452 1.20988 0.89298 1.37399
1.05567 0.90097 1.24925 0.94727 0.95962 0.97744 1.69882 1.09884
1.46215 1.28086 0.86954 0.81130 0.79567 0.81095 1.20855 1.19215
1.22542 1.62184 1.17678 1.39906 1.03617 1.21935 1.00447 0.93745
0.90680 1.22180 1.01975 1.00657 0.96728 1.21522 0.91354 0.95717
0.92865 0.93318 1.21987 1.00872 1.00568 0.97009 1.22555 0.92679
1.01509 0.97670 1.23024 1.04723 0.98506 0.96292 1.23004 1.00317
0.96516 1.02547 0.92928 0.94262 0.92711 0.92993 0.91788 0.92776
0.96199 0.90155 0.94045 0.92169 0.92001 0.93195 0.91434 0.92443
0.86863 0.89439 0.89304 0.89326 0.89190
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.86 8.34 37.16 0.31 -2.55 16
2 C -0.16 -3.54 4.39 -26.73 -0.12 -3.65 16
3 C 0.18 4.15 1.26 -68.87 -0.09 4.06 16
4 H 0.05 1.13 4.27 -51.93 -0.22 0.91 16
5 C -0.49 -13.74 8.59 -34.44 -0.30 -14.03 16
6 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16
7 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16
8 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16
9 Si 0.88 21.94 24.42 -169.99 -4.15 17.79 16
10 H -0.28 -6.87 6.81 56.52 0.39 -6.49 16
11 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16
12 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16
13 N -0.51 -10.24 4.25 -220.10 -0.94 -11.17 16
14 C 0.06 1.12 4.09 -3.83 -0.02 1.11 16
15 C -0.16 -2.51 8.64 37.16 0.32 -2.19 16
16 C 0.09 1.57 1.64 -67.71 -0.11 1.46 16
17 H 0.05 0.81 4.04 -51.93 -0.21 0.60 16
18 C -0.15 -2.43 8.05 37.16 0.30 -2.13 16
19 C -0.13 -1.81 3.30 -90.62 -0.30 -2.11 16
20 C -0.19 -2.30 8.68 -26.73 -0.23 -2.53 16
21 C -0.19 -2.24 9.57 -26.73 -0.26 -2.50 16
22 H 0.05 0.92 6.01 -51.93 -0.31 0.61 16
23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.05 0.90 5.00 -51.93 -0.26 0.64 16
25 H 0.05 1.21 3.22 -51.93 -0.17 1.04 16
26 H 0.06 1.36 6.00 -51.93 -0.31 1.04 16
27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
28 H 0.02 0.35 6.32 -51.92 -0.33 0.03 16
29 H 0.08 1.71 6.81 -51.93 -0.35 1.35 16
30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
31 H 0.06 1.02 7.99 -51.93 -0.42 0.60 16
32 H 0.06 0.88 4.10 -51.93 -0.21 0.67 16
33 H 0.05 0.69 6.51 -51.93 -0.34 0.35 16
34 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16
35 H 0.06 1.00 5.00 -51.93 -0.26 0.74 16
36 H 0.11 1.75 6.85 -51.93 -0.36 1.39 16
37 H 0.09 1.07 8.03 -51.93 -0.42 0.65 16
38 H 0.09 0.99 8.01 -51.93 -0.42 0.57 16
39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
40 H 0.09 1.05 7.12 -51.93 -0.37 0.68 16
LS Contribution 279.29 15.07 4.21 4.21
Total: -1.00 -28.95 279.29 -6.93 -35.88
By element:
Atomic # 1 Polarization: 9.60 SS G_CDS: -6.24 Total: 3.36 kcal
Atomic # 6 Polarization: -22.64 SS G_CDS: -0.58 Total: -23.22 kcal
Atomic # 7 Polarization: -37.85 SS G_CDS: -0.16 Total: -38.02 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -4.15 Total: 17.79 kcal
Total LS contribution 4.21 Total: 4.21 kcal
Total: -28.95 -6.93 -35.88 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000324779871.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.969 kcal
(2) G-P(sol) polarization free energy of solvation -28.947 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.021 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.879 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.090 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds