Wall clock time and date at job start Mon Mar 30 2020 02:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46988 * 2 1 4 4 H 1.08999 * 109.47047 * 307.44083 * 3 2 1 5 5 C 1.50699 * 109.46969 * 187.43948 * 3 2 1 6 6 H 1.07995 * 120.00060 * 239.99719 * 5 3 2 7 7 C 1.37878 * 120.00117 * 59.99836 * 5 3 2 8 8 N 1.31512 * 120.00133 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99687 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.46837 * 269.99597 * 9 7 5 11 11 H 1.48495 * 109.47534 * 29.99806 * 9 7 5 12 12 H 1.48503 * 109.47157 * 150.00257 * 9 7 5 13 13 N 1.46899 * 109.47142 * 67.44193 * 3 2 1 14 14 C 1.46898 * 111.00456 * 43.49581 * 13 3 2 15 15 C 1.52999 * 109.47219 * 159.41032 * 14 13 3 16 16 C 1.46905 * 110.99699 * 279.53964 * 13 3 2 17 17 H 1.08990 * 109.47147 * 70.55465 * 16 13 3 18 18 C 1.53005 * 109.47154 * 310.55345 * 16 13 3 19 19 C 1.52997 * 109.47018 * 190.55762 * 16 13 3 20 20 C 1.53004 * 117.49741 * 241.53507 * 19 16 13 21 21 C 1.53002 * 117.50028 * 172.91116 * 19 16 13 22 22 H 1.08994 * 109.46989 * 41.14265 * 1 2 3 23 23 H 1.09003 * 109.47114 * 161.14430 * 1 2 3 24 24 H 1.09005 * 109.47403 * 281.14383 * 1 2 3 25 25 H 1.08995 * 109.46967 * 239.99613 * 2 1 3 26 26 H 1.09003 * 109.46496 * 119.99744 * 2 1 3 27 27 H 0.96995 * 119.99746 * 180.02562 * 8 7 5 28 28 H 1.09007 * 109.46498 * 279.40989 * 14 13 3 29 29 H 1.08996 * 109.47202 * 39.40724 * 14 13 3 30 30 H 1.09005 * 109.46848 * 192.78205 * 15 14 13 31 31 H 1.08999 * 109.47186 * 312.78284 * 15 14 13 32 32 H 1.09004 * 109.46804 * 72.78311 * 15 14 13 33 33 H 1.09006 * 109.47048 * 190.75653 * 18 16 13 34 34 H 1.09003 * 109.47229 * 310.75341 * 18 16 13 35 35 H 1.09000 * 109.46937 * 70.75623 * 18 16 13 36 36 H 1.08997 * 115.55267 * 27.23892 * 19 16 13 37 37 H 1.08991 * 117.49999 * 359.97438 * 20 19 16 38 38 H 1.09004 * 117.49715 * 145.02256 * 20 19 16 39 39 H 1.09002 * 117.49778 * 214.97418 * 21 19 16 40 40 H 1.08997 * 117.49864 * 359.97340 * 21 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5721 1.9933 -0.8159 5 6 3.5357 1.4465 -0.1840 6 1 4.1718 1.8802 0.5734 7 6 4.0921 0.8965 -1.3192 8 7 5.3975 0.8995 -1.4796 9 14 2.9919 0.1469 -2.6296 10 1 2.7821 -1.2934 -2.3352 11 1 1.6822 0.8467 -2.6360 12 1 3.6368 0.2914 -3.9595 13 7 1.7023 2.0813 1.2790 14 6 1.9705 1.1778 2.4058 15 6 2.1087 1.9942 3.6924 16 6 0.3048 2.5341 1.2884 17 1 -0.3571 1.6692 1.3283 18 6 0.0200 3.3361 0.0169 19 6 0.0634 3.4181 2.5137 20 6 -0.9723 2.9428 3.5346 21 6 -1.2886 4.1267 2.6183 22 1 -0.3633 0.7739 -0.6761 23 1 -0.3633 -0.9725 -0.3321 24 1 -0.3634 0.1986 1.0083 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 5.7888 0.5128 -2.2784 28 1 1.1461 0.4722 2.5099 29 1 2.8953 0.6313 2.2212 30 1 2.5270 1.3654 4.4784 31 1 2.7698 2.8425 3.5152 32 1 1.1276 2.3561 4.0001 33 1 -0.9471 3.8307 0.1083 34 1 0.7994 4.0853 -0.1224 35 1 0.0047 2.6638 -0.8409 36 1 0.9387 3.9456 2.8926 37 1 -1.4820 2.0007 3.3332 38 1 -0.7784 3.1577 4.5855 39 1 -1.3027 5.1202 3.0665 40 1 -2.0059 3.9634 1.8141 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324779871.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:50 Heat of formation + Delta-G solvation = 25.317861 kcal Electronic energy + Delta-G solvation = -17213.003997 eV Core-core repulsion = 14835.677228 eV Total energy + Delta-G solvation = -2377.326769 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.68741 -37.68726 -34.71095 -33.51592 -32.46625 -30.30283 -28.25359 -25.24394 -24.11501 -23.57336 -22.88407 -20.98961 -20.36417 -18.70663 -17.23119 -16.87273 -16.09172 -15.95689 -15.39796 -15.18769 -14.75460 -14.21729 -13.88032 -13.59404 -13.55619 -13.09584 -12.93842 -12.86782 -12.69442 -12.50819 -12.31607 -12.16615 -12.00712 -11.84276 -11.57055 -11.46534 -11.16290 -10.94170 -10.89155 -10.69559 -10.40243 -8.72444 -8.25214 -6.25310 1.28026 1.33556 1.43736 2.32498 3.00756 3.08369 3.27281 3.93544 4.08198 4.17438 4.20078 4.29992 4.32593 4.42457 4.50688 4.57669 4.63606 4.71207 4.80262 4.84912 4.90001 4.95546 4.97351 5.07367 5.08663 5.13269 5.15418 5.27221 5.36502 5.39201 5.41061 5.49400 5.56275 5.57587 5.72384 6.16944 6.61356 6.81376 6.87121 7.38729 8.92314 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033852 B = 0.009569 C = 0.008812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.932706 B = 2925.521170 C = 3176.615686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.164 4.164 3 C 0.186 3.814 4 H 0.045 0.955 5 C -0.494 4.494 6 H 0.032 0.968 7 C 0.008 3.992 8 N -0.953 5.953 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.245 1.245 12 H -0.301 1.301 13 N -0.528 5.528 14 C 0.064 3.936 15 C -0.148 4.148 16 C 0.096 3.904 17 H 0.059 0.941 18 C -0.146 4.146 19 C -0.150 4.150 20 C -0.176 4.176 21 C -0.170 4.170 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.059 0.941 27 H 0.263 0.737 28 H 0.035 0.965 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.146 2.022 7.364 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.203 4.203 3 C 0.078 3.922 4 H 0.062 0.938 5 C -0.533 4.533 6 H 0.050 0.950 7 C -0.188 4.188 8 N -0.595 5.595 9 Si 0.774 3.226 10 H -0.198 1.198 11 H -0.169 1.169 12 H -0.229 1.229 13 N -0.252 5.252 14 C -0.064 4.064 15 C -0.206 4.206 16 C -0.012 4.012 17 H 0.076 0.924 18 C -0.203 4.203 19 C -0.168 4.168 20 C -0.213 4.213 21 C -0.208 4.208 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.715 2.405 7.315 17.500 hybrid contribution 0.206 -1.182 -0.957 1.535 sum -15.509 1.222 6.358 16.807 Atomic orbital electron populations 1.22141 0.94818 1.01843 1.02164 1.22586 0.96416 1.00648 1.00667 1.19727 0.93631 0.89383 0.89448 0.93784 1.21275 0.91923 1.35954 1.04108 0.95010 1.25769 0.96002 0.96737 1.00325 1.70050 1.12114 1.48199 1.29113 0.85887 0.79924 0.79249 0.77535 1.19764 1.16862 1.22871 1.62088 1.20673 1.39957 1.02527 1.21876 0.99029 0.94071 0.91436 1.22107 1.03014 0.99800 0.95637 1.21581 0.89028 0.96360 0.94234 0.92354 1.21982 1.01797 0.99944 0.96548 1.22338 0.93625 1.02890 0.97972 1.23110 1.02627 0.98939 0.96608 1.23088 0.97973 0.97199 1.02506 0.92469 0.92223 0.91097 0.94656 0.92274 0.92806 0.94677 0.94009 0.92593 0.93996 0.89680 0.90122 0.93565 0.93514 0.88414 0.88825 0.87929 0.88000 0.88301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.88 8.34 71.98 0.60 -4.28 16 2 C -0.16 -6.82 4.39 30.60 0.13 -6.69 16 3 C 0.19 8.60 1.26 44.17 0.06 8.66 16 4 H 0.04 2.08 4.27 -2.39 -0.01 2.07 16 5 C -0.49 -28.69 8.59 25.60 0.22 -28.47 16 6 H 0.03 2.09 8.06 -2.91 -0.02 2.07 16 7 C 0.01 0.46 5.45 84.66 0.46 0.92 16 8 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 9 Si 0.95 45.76 24.42 68.60 1.68 47.44 16 10 H -0.27 -12.58 6.81 99.48 0.68 -11.90 16 11 H -0.24 -10.84 6.53 99.48 0.65 -10.19 16 12 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 13 N -0.53 -21.14 4.25 -850.27 -3.62 -24.75 16 14 C 0.06 2.37 4.09 86.30 0.35 2.73 16 15 C -0.15 -4.58 8.64 71.98 0.62 -3.96 16 16 C 0.10 2.99 1.64 44.92 0.07 3.07 16 17 H 0.06 1.73 4.04 -2.39 -0.01 1.72 16 18 C -0.15 -4.50 8.05 71.98 0.58 -3.92 16 19 C -0.15 -3.90 3.30 -10.79 -0.04 -3.94 16 20 C -0.18 -3.55 8.68 30.60 0.27 -3.29 16 21 C -0.17 -3.39 9.57 30.60 0.29 -3.10 16 22 H 0.06 1.78 6.01 -2.39 -0.01 1.77 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.07 2.03 5.00 -2.38 -0.01 2.02 16 25 H 0.04 1.58 3.22 -2.39 -0.01 1.57 16 26 H 0.06 2.47 6.00 -2.39 -0.01 2.46 16 27 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 28 H 0.04 1.18 6.32 -2.38 -0.02 1.17 16 29 H 0.04 1.84 6.81 -2.39 -0.02 1.83 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.04 1.43 7.99 -2.39 -0.02 1.41 16 32 H 0.08 2.22 4.10 -2.38 -0.01 2.21 16 33 H 0.08 1.96 6.51 -2.38 -0.02 1.94 16 34 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.05 1.53 5.00 -2.39 -0.01 1.51 16 36 H 0.10 2.88 6.85 -2.39 -0.02 2.87 16 37 H 0.09 1.82 8.03 -2.39 -0.02 1.80 16 38 H 0.10 1.82 8.01 -2.39 -0.02 1.80 16 39 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.10 1.82 7.12 -2.39 -0.02 1.81 16 Total: -1.00 -65.58 279.29 2.92 -62.66 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.94 Total: 17.65 kcal Atomic # 6 Polarization: -45.89 SS G_CDS: 3.62 Total: -42.27 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -3.32 Total: -85.48 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.68 Total: 47.44 kcal Total: -65.58 2.92 -62.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324779871.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.983 kcal (2) G-P(sol) polarization free energy of solvation -65.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds