Wall clock time and date at job start Mon Mar 30 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47084 * 2 1 4 4 H 1.08998 * 109.46782 * 299.15742 * 3 2 1 5 5 C 1.50709 * 109.47031 * 179.15991 * 3 2 1 6 6 H 1.08001 * 119.99911 * 239.99858 * 5 3 2 7 7 C 1.37878 * 119.99645 * 59.99677 * 5 3 2 8 8 N 1.31512 * 120.00206 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99613 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47228 * 90.00454 * 9 7 5 11 11 H 1.48505 * 109.47167 * 210.00108 * 9 7 5 12 12 H 1.48503 * 109.47342 * 330.00480 * 9 7 5 13 13 N 1.46894 * 109.47301 * 59.16107 * 3 2 1 14 14 C 1.46903 * 111.00162 * 220.02439 * 13 3 2 15 15 C 1.53001 * 110.01355 * 291.77109 * 14 13 3 16 16 C 1.53005 * 109.47417 * 299.37245 * 15 14 13 17 17 C 1.53867 * 110.03405 * 170.32950 * 14 13 3 18 18 C 1.54268 * 106.59868 * 240.71560 * 17 14 13 19 19 C 1.54889 * 104.19229 * 23.60763 * 18 17 14 20 20 C 1.54260 * 110.03183 * 53.15796 * 14 13 3 21 21 H 1.08999 * 109.46555 * 41.86230 * 1 2 3 22 22 H 1.08998 * 109.47483 * 281.86103 * 1 2 3 23 23 H 1.08998 * 109.46894 * 161.85652 * 1 2 3 24 24 H 1.09004 * 109.46468 * 119.99953 * 2 1 3 25 25 H 1.08996 * 109.47408 * 239.99345 * 2 1 3 26 26 H 0.97000 * 119.99777 * 179.97438 * 8 7 5 27 27 H 1.00903 * 111.00004 * 343.97854 * 13 3 2 28 28 H 1.09003 * 109.47238 * 59.37608 * 15 14 13 29 29 H 1.09001 * 109.47216 * 179.37219 * 15 14 13 30 30 H 1.08997 * 109.47223 * 183.54267 * 16 15 14 31 31 H 1.08994 * 109.46912 * 303.55198 * 16 15 14 32 32 H 1.09009 * 109.46617 * 63.54503 * 16 15 14 33 33 H 1.09001 * 110.03282 * 0.02562 * 17 14 13 34 34 H 1.09003 * 110.03369 * 121.42763 * 17 14 13 35 35 H 1.08999 * 110.48271 * 264.93068 * 18 17 14 36 36 H 1.08996 * 110.48576 * 142.29089 * 18 17 14 37 37 H 1.09000 * 110.75172 * 203.74468 * 19 18 17 38 38 H 1.09003 * 110.75372 * 80.37928 * 19 18 17 39 39 H 1.08997 * 110.48716 * 214.35602 * 20 14 13 40 40 H 1.09007 * 110.48801 * 337.00207 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6890 1.9519 -0.8974 5 6 3.5470 1.4425 0.0208 6 1 4.0757 1.9141 0.8359 7 6 4.2505 0.8404 -1.0007 8 7 3.6066 0.2665 -1.9934 9 14 6.1183 0.8410 -0.9752 10 1 6.6041 -0.3677 -0.2623 11 1 6.6323 0.8340 -2.3685 12 1 6.6034 2.0573 -0.2747 13 7 1.5339 2.1408 1.1891 14 6 1.1378 3.5172 0.8626 15 6 2.3739 4.3498 0.5166 16 6 3.3189 4.3839 1.7195 17 6 0.3924 4.1475 2.0520 18 6 -1.0199 4.5073 1.5464 19 6 -1.2450 3.5597 0.3421 20 6 0.1524 3.5160 -0.3244 21 1 -0.3632 0.7654 -0.6858 22 1 -0.3634 0.2112 1.0057 23 1 -0.3633 -0.9766 -0.3200 24 1 1.8933 -0.5139 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 4.1016 -0.1568 -2.7123 27 1 0.7684 1.6339 1.6077 28 1 2.8863 3.9028 -0.3354 29 1 2.0691 5.3656 0.2652 30 1 4.1691 5.0281 1.4955 31 1 2.7874 4.7725 2.5881 32 1 3.6733 3.3751 1.9318 33 1 0.3250 3.4322 2.8718 34 1 0.9110 5.0472 2.3832 35 1 -1.0563 5.5481 1.2249 36 1 -1.7620 4.3207 2.3227 37 1 -1.9863 3.9734 -0.3416 38 1 -1.5424 2.5675 0.6816 39 1 0.3054 4.3967 -0.9480 40 1 0.2658 2.6059 -0.9134 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382565284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:46 Heat of formation + Delta-G solvation = -19.350149 kcal Electronic energy + Delta-G solvation = -17224.702716 eV Core-core repulsion = 14845.438997 eV Total energy + Delta-G solvation = -2379.263719 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.08417 -35.04505 -32.54537 -31.83112 -29.67070 -28.25347 -26.97076 -25.24921 -22.82211 -22.12431 -20.46977 -19.24931 -17.95765 -16.24300 -15.50144 -15.18781 -14.62111 -13.69535 -13.62876 -13.07119 -12.93257 -12.59321 -12.50683 -12.16006 -11.61476 -11.33306 -11.05983 -10.97251 -10.83250 -10.72146 -10.62296 -10.56611 -10.38367 -10.17325 -9.94329 -9.83600 -9.67778 -9.43171 -9.28603 -8.89464 -8.24737 -7.02328 -5.88817 -3.89751 3.36267 3.43051 3.47007 4.50957 4.99807 5.09371 5.19394 5.39224 5.57720 5.77903 5.87946 5.91503 6.01263 6.05089 6.12312 6.17186 6.18994 6.24075 6.31812 6.38789 6.40305 6.42307 6.54192 6.67109 6.68173 6.82019 6.87773 6.98522 7.14245 7.20632 7.26497 7.37083 7.62549 7.83427 8.05983 8.45491 8.58083 8.86886 9.18652 9.73853 11.16848 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028832 B = 0.010417 C = 0.008487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.922799 B = 2687.391252 C = 3298.289396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C 0.211 3.789 4 H 0.023 0.977 5 C -0.481 4.481 6 H 0.066 0.934 7 C 0.052 3.948 8 N -0.900 5.900 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.671 5.671 14 C 0.125 3.875 15 C -0.100 4.100 16 C -0.138 4.138 17 C -0.117 4.117 18 C -0.124 4.124 19 C -0.124 4.124 20 C -0.163 4.163 21 H 0.044 0.956 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.039 0.961 25 H 0.096 0.904 26 H 0.257 0.743 27 H 0.317 0.683 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.031 0.969 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.057 0.943 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.203 5.888 4.680 10.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.170 4.170 3 C 0.104 3.896 4 H 0.040 0.960 5 C -0.520 4.520 6 H 0.084 0.916 7 C -0.148 4.148 8 N -0.540 5.540 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.302 5.302 14 C 0.033 3.967 15 C -0.138 4.138 16 C -0.195 4.195 17 C -0.155 4.155 18 C -0.162 4.162 19 C -0.161 4.161 20 C -0.202 4.202 21 H 0.063 0.937 22 H 0.054 0.946 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.114 0.886 26 H 0.067 0.933 27 H 0.135 0.865 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.511 5.971 4.741 10.026 hybrid contribution 0.171 -0.256 -0.630 0.701 sum -6.340 5.715 4.111 9.474 Atomic orbital electron populations 1.21962 0.99809 0.99869 0.99326 1.21898 0.90913 1.01174 1.03007 1.19329 0.94575 0.88862 0.86840 0.95985 1.21350 0.90901 1.33500 1.06242 0.91630 1.24953 0.97950 0.96045 0.95820 1.69873 1.34766 1.38336 1.11063 0.86647 0.86488 0.78305 0.76833 1.21017 1.21651 1.19992 1.60919 1.36744 1.00843 1.31694 1.21377 0.92588 0.91286 0.91459 1.21477 0.95737 0.96703 0.99880 1.21691 0.97818 1.02910 0.97103 1.22349 0.94433 1.00484 0.98265 1.22371 0.97195 0.99082 0.97573 1.22468 0.97534 0.99169 0.96963 1.23331 0.94739 1.02753 0.99425 0.93729 0.94606 0.94545 0.94213 0.88622 0.93333 0.86493 0.90188 0.94321 0.94985 0.94449 0.90267 0.91633 0.91770 0.92299 0.92545 0.92588 0.91966 0.92398 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.38 37.16 0.35 -2.53 16 2 C -0.13 -3.02 5.27 -26.73 -0.14 -3.16 16 3 C 0.21 4.97 1.11 -68.87 -0.08 4.90 16 4 H 0.02 0.58 5.28 -51.93 -0.27 0.31 16 5 C -0.48 -12.72 7.37 -34.44 -0.25 -12.97 16 6 H 0.07 1.76 5.82 -52.49 -0.31 1.46 16 7 C 0.05 1.41 5.30 -17.82 -0.09 1.32 16 8 N -0.90 -25.32 11.33 55.43 0.63 -24.69 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.67 -13.56 5.30 -93.13 -0.49 -14.05 16 14 C 0.12 2.23 0.53 -130.49 -0.07 2.16 16 15 C -0.10 -1.89 4.30 -26.73 -0.11 -2.00 16 16 C -0.14 -2.52 9.50 37.16 0.35 -2.16 16 17 C -0.12 -1.78 5.57 -25.62 -0.14 -1.92 16 18 C -0.12 -1.66 6.83 -25.07 -0.17 -1.83 16 19 C -0.12 -1.79 6.91 -24.74 -0.17 -1.96 16 20 C -0.16 -2.83 5.55 -25.08 -0.14 -2.97 16 21 H 0.04 0.84 6.44 -51.93 -0.33 0.50 16 22 H 0.03 0.61 7.00 -51.93 -0.36 0.24 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.10 2.49 6.09 -51.93 -0.32 2.18 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.32 6.10 6.19 -39.29 -0.24 5.85 16 28 H 0.08 1.78 6.62 -51.93 -0.34 1.43 16 29 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.04 0.61 6.43 -51.93 -0.33 0.27 16 32 H 0.08 1.65 5.75 -51.92 -0.30 1.35 16 33 H 0.06 1.00 7.75 -51.93 -0.40 0.60 16 34 H 0.06 0.94 6.40 -51.93 -0.33 0.61 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.98 7.85 -51.93 -0.41 0.58 16 40 H 0.08 1.66 3.96 -51.93 -0.21 1.46 16 LS Contribution 290.12 15.07 4.37 4.37 Total: -1.00 -26.53 290.12 -7.86 -34.40 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.68 Total: 6.65 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -0.67 Total: -23.13 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.13 Total: -38.74 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.53 -7.86 -34.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382565284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.047 kcal (2) G-P(sol) polarization free energy of solvation -26.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds