Wall clock time and date at job start Mon Mar 30 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47084 * 2 1 4 4 H 1.08998 * 109.46782 * 299.15742 * 3 2 1 5 5 C 1.50709 * 109.47031 * 179.15991 * 3 2 1 6 6 H 1.08001 * 119.99911 * 239.99858 * 5 3 2 7 7 C 1.37878 * 119.99645 * 59.99677 * 5 3 2 8 8 N 1.31512 * 120.00206 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99613 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47228 * 90.00454 * 9 7 5 11 11 H 1.48505 * 109.47167 * 210.00108 * 9 7 5 12 12 H 1.48503 * 109.47342 * 330.00480 * 9 7 5 13 13 N 1.46894 * 109.47301 * 59.16107 * 3 2 1 14 14 C 1.46903 * 111.00162 * 220.02439 * 13 3 2 15 15 C 1.53001 * 110.01355 * 291.77109 * 14 13 3 16 16 C 1.53005 * 109.47417 * 299.37245 * 15 14 13 17 17 C 1.53867 * 110.03405 * 170.32950 * 14 13 3 18 18 C 1.54268 * 106.59868 * 240.71560 * 17 14 13 19 19 C 1.54889 * 104.19229 * 23.60763 * 18 17 14 20 20 C 1.54260 * 110.03183 * 53.15796 * 14 13 3 21 21 H 1.08999 * 109.46555 * 41.86230 * 1 2 3 22 22 H 1.08998 * 109.47483 * 281.86103 * 1 2 3 23 23 H 1.08998 * 109.46894 * 161.85652 * 1 2 3 24 24 H 1.09004 * 109.46468 * 119.99953 * 2 1 3 25 25 H 1.08996 * 109.47408 * 239.99345 * 2 1 3 26 26 H 0.97000 * 119.99777 * 179.97438 * 8 7 5 27 27 H 1.00903 * 111.00004 * 343.97854 * 13 3 2 28 28 H 1.09003 * 109.47238 * 59.37608 * 15 14 13 29 29 H 1.09001 * 109.47216 * 179.37219 * 15 14 13 30 30 H 1.08997 * 109.47223 * 183.54267 * 16 15 14 31 31 H 1.08994 * 109.46912 * 303.55198 * 16 15 14 32 32 H 1.09009 * 109.46617 * 63.54503 * 16 15 14 33 33 H 1.09001 * 110.03282 * 0.02562 * 17 14 13 34 34 H 1.09003 * 110.03369 * 121.42763 * 17 14 13 35 35 H 1.08999 * 110.48271 * 264.93068 * 18 17 14 36 36 H 1.08996 * 110.48576 * 142.29089 * 18 17 14 37 37 H 1.09000 * 110.75172 * 203.74468 * 19 18 17 38 38 H 1.09003 * 110.75372 * 80.37928 * 19 18 17 39 39 H 1.08997 * 110.48716 * 214.35602 * 20 14 13 40 40 H 1.09007 * 110.48801 * 337.00207 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6890 1.9519 -0.8974 5 6 3.5470 1.4425 0.0208 6 1 4.0757 1.9141 0.8359 7 6 4.2505 0.8404 -1.0007 8 7 3.6066 0.2665 -1.9934 9 14 6.1183 0.8410 -0.9752 10 1 6.6041 -0.3677 -0.2623 11 1 6.6323 0.8340 -2.3685 12 1 6.6034 2.0573 -0.2747 13 7 1.5339 2.1408 1.1891 14 6 1.1378 3.5172 0.8626 15 6 2.3739 4.3498 0.5166 16 6 3.3189 4.3839 1.7195 17 6 0.3924 4.1475 2.0520 18 6 -1.0199 4.5073 1.5464 19 6 -1.2450 3.5597 0.3421 20 6 0.1524 3.5160 -0.3244 21 1 -0.3632 0.7654 -0.6858 22 1 -0.3634 0.2112 1.0057 23 1 -0.3633 -0.9766 -0.3200 24 1 1.8933 -0.5139 0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 4.1016 -0.1568 -2.7123 27 1 0.7684 1.6339 1.6077 28 1 2.8863 3.9028 -0.3354 29 1 2.0691 5.3656 0.2652 30 1 4.1691 5.0281 1.4955 31 1 2.7874 4.7725 2.5881 32 1 3.6733 3.3751 1.9318 33 1 0.3250 3.4322 2.8718 34 1 0.9110 5.0472 2.3832 35 1 -1.0563 5.5481 1.2249 36 1 -1.7620 4.3207 2.3227 37 1 -1.9863 3.9734 -0.3416 38 1 -1.5424 2.5675 0.6816 39 1 0.3054 4.3967 -0.9480 40 1 0.2658 2.6059 -0.9134 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382565284.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:46 Heat of formation + Delta-G solvation = -33.930446 kcal Electronic energy + Delta-G solvation = -17225.334965 eV Core-core repulsion = 14845.438997 eV Total energy + Delta-G solvation = -2379.895968 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.52761 -36.72943 -34.03010 -33.76278 -31.27263 -29.52164 -28.74196 -26.82029 -24.66428 -23.52700 -21.93265 -20.78270 -19.48602 -18.23233 -16.94702 -16.64728 -16.45211 -15.40128 -15.07292 -14.68362 -14.47667 -14.06379 -14.00252 -13.67612 -13.25406 -13.04862 -12.85362 -12.56494 -12.51132 -12.33110 -12.10250 -11.91195 -11.82071 -11.64428 -11.53180 -11.34628 -11.25459 -11.17745 -10.88914 -10.73411 -10.30032 -8.72614 -7.96576 -6.03474 1.40601 1.42586 1.51464 2.48575 3.28563 3.67490 3.82885 3.95790 4.20249 4.46870 4.47697 4.56549 4.59153 4.64782 4.68996 4.74652 4.85465 4.91514 4.97236 5.04170 5.06426 5.13711 5.19572 5.21957 5.27744 5.31343 5.40068 5.45978 5.54153 5.59558 5.68060 5.72914 5.81898 5.92042 6.04815 6.50904 6.80926 7.12081 7.17181 7.63703 9.06125 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028832 B = 0.010417 C = 0.008487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.922799 B = 2687.391252 C = 3298.289396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.222 3.778 4 H -0.002 1.002 5 C -0.486 4.486 6 H 0.057 0.943 7 C 0.005 3.995 8 N -0.925 5.925 9 Si 0.941 3.059 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.272 1.272 13 N -0.671 5.671 14 C 0.119 3.881 15 C -0.099 4.099 16 C -0.131 4.131 17 C -0.112 4.112 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.163 4.163 21 H 0.042 0.958 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.029 0.971 25 H 0.061 0.939 26 H 0.254 0.746 27 H 0.325 0.675 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 7.113 6.145 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.114 3.886 4 H 0.015 0.985 5 C -0.525 4.525 6 H 0.075 0.925 7 C -0.192 4.192 8 N -0.567 5.567 9 Si 0.769 3.231 10 H -0.208 1.208 11 H -0.216 1.216 12 H -0.197 1.197 13 N -0.302 5.302 14 C 0.028 3.972 15 C -0.137 4.137 16 C -0.188 4.188 17 C -0.150 4.150 18 C -0.153 4.153 19 C -0.156 4.156 20 C -0.203 4.203 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.063 0.937 27 H 0.143 0.857 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.075 0.925 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.845 7.205 6.222 12.335 hybrid contribution 0.593 -0.601 -1.085 1.375 sum -7.251 6.604 5.136 11.072 Atomic orbital electron populations 1.21798 0.96401 1.00666 1.00744 1.21724 0.93978 1.00170 1.00734 1.19028 0.93114 0.89301 0.87190 0.98485 1.21650 0.92769 1.32487 1.05583 0.92533 1.25591 1.01490 0.96270 0.95855 1.70006 1.35820 1.39303 1.11562 0.85810 0.82421 0.78239 0.76649 1.20753 1.21612 1.19680 1.60795 1.37434 1.01893 1.30103 1.21507 0.92623 0.89809 0.93284 1.21453 0.96120 0.97660 0.98509 1.21599 0.98186 1.01308 0.97718 1.22292 0.95376 1.00554 0.96756 1.22342 0.96235 0.99349 0.97370 1.22444 0.95726 0.99806 0.97578 1.23247 0.96832 1.01161 0.99020 0.93907 0.92315 0.93228 0.95235 0.92021 0.93661 0.85697 0.94511 0.92236 0.94324 0.92038 0.93284 0.91488 0.90814 0.91049 0.90341 0.91033 0.92009 0.92508 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.11 9.38 71.98 0.68 -4.44 16 2 C -0.13 -5.95 5.27 30.59 0.16 -5.79 16 3 C 0.22 10.70 1.11 44.17 0.05 10.75 16 4 H 0.00 -0.12 5.28 -2.39 -0.01 -0.13 16 5 C -0.49 -26.41 7.37 25.60 0.19 -26.22 16 6 H 0.06 3.12 5.82 -2.91 -0.02 3.11 16 7 C 0.00 0.26 5.30 84.66 0.45 0.71 16 8 N -0.92 -53.77 11.33 21.45 0.24 -53.53 16 9 Si 0.94 45.03 29.54 68.60 2.03 47.05 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.67 -26.87 5.30 -448.57 -2.38 -29.25 16 14 C 0.12 4.12 0.53 4.25 0.00 4.13 16 15 C -0.10 -3.70 4.30 30.60 0.13 -3.57 16 16 C -0.13 -4.64 9.50 71.98 0.68 -3.95 16 17 C -0.11 -3.03 5.57 31.32 0.17 -2.86 16 18 C -0.12 -2.60 6.83 31.67 0.22 -2.38 16 19 C -0.12 -3.07 6.91 31.88 0.22 -2.85 16 20 C -0.16 -5.52 5.55 31.67 0.18 -5.34 16 21 H 0.04 1.58 6.44 -2.39 -0.02 1.57 16 22 H 0.06 1.88 7.00 -2.39 -0.02 1.86 16 23 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.06 3.32 6.09 -2.39 -0.01 3.31 16 26 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 27 H 0.32 12.04 6.19 -89.69 -0.56 11.48 16 28 H 0.04 1.67 6.62 -2.39 -0.02 1.65 16 29 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.85 6.43 -2.39 -0.02 1.84 16 32 H 0.05 2.03 5.75 -2.38 -0.01 2.02 16 33 H 0.07 1.82 7.75 -2.39 -0.02 1.80 16 34 H 0.07 1.87 6.40 -2.39 -0.02 1.86 16 35 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.89 7.85 -2.39 -0.02 1.87 16 40 H 0.05 2.16 3.96 -2.38 -0.01 2.15 16 Total: -1.00 -58.43 290.12 3.47 -54.95 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.46 Total: 22.59 kcal Atomic # 6 Polarization: -44.95 SS G_CDS: 3.13 Total: -41.82 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.14 Total: -82.78 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -58.43 3.47 -54.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382565284.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.024 kcal (2) G-P(sol) polarization free energy of solvation -58.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds