Wall clock time and date at job start Mon Mar 30 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 112.85715 * 2 1 4 4 C 1.53780 * 113.61393 * 228.68991 * 2 1 3 5 5 C 1.53786 * 87.08292 * 270.88503 * 4 2 1 6 6 H 1.08993 * 113.69429 * 220.00745 * 5 4 2 7 7 N 1.46906 * 113.61161 * 89.11590 * 5 4 2 8 8 C 1.46898 * 110.99888 * 107.50488 * 7 5 4 9 9 C 1.53007 * 109.46764 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47066 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47425 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47110 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00430 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99819 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00002 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00042 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47311 * 59.99500 * 16 14 12 18 18 H 1.48503 * 109.46920 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46818 * 299.99460 * 16 14 12 20 20 C 1.53780 * 87.07926 * 334.56872 * 5 4 2 21 21 H 1.08997 * 113.61463 * 270.88050 * 20 5 4 22 22 C 1.53006 * 113.61443 * 140.06259 * 20 5 4 23 23 H 1.09002 * 109.46898 * 288.81174 * 1 2 3 24 24 H 1.09005 * 109.46890 * 48.80321 * 1 2 3 25 25 H 1.08997 * 109.47187 * 168.80506 * 1 2 3 26 26 H 1.09002 * 113.61686 * 156.34205 * 4 2 1 27 27 H 1.08998 * 113.61586 * 25.43387 * 4 2 1 28 28 H 1.00902 * 110.99923 * 231.46429 * 7 5 4 29 29 H 1.08995 * 109.47296 * 299.99911 * 8 7 5 30 30 H 1.08997 * 109.47334 * 60.00212 * 8 7 5 31 31 H 1.09004 * 109.47056 * 299.99764 * 9 8 7 32 32 H 1.08997 * 109.46954 * 60.00063 * 9 8 7 33 33 H 1.09004 * 109.47365 * 300.00747 * 10 9 8 34 34 H 1.09005 * 109.47287 * 59.99608 * 10 9 8 35 35 H 1.09004 * 109.46871 * 299.99945 * 11 10 9 36 36 H 1.08997 * 109.46779 * 60.00024 * 11 10 9 37 37 H 0.96999 * 119.99593 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.46738 * 60.00003 * 22 20 5 39 39 H 1.09001 * 109.46922 * 179.97438 * 22 20 5 40 40 H 1.08992 * 109.47047 * 299.99873 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9534 1.0044 0.0000 4 6 2.1460 -0.9302 -1.0584 5 6 2.0929 -2.0426 0.0021 6 1 2.9709 -2.6884 0.0037 7 7 0.8312 -2.7952 0.0028 8 6 1.0222 -4.1434 -0.5482 9 6 -0.3104 -4.8950 -0.5304 10 6 -0.1118 -6.2991 -1.1048 11 6 -1.4444 -7.0505 -1.0877 12 6 -1.2485 -8.4336 -1.6529 13 1 -0.2714 -8.7455 -1.9909 14 6 -2.3170 -9.3007 -1.7394 15 7 -3.5071 -8.9208 -1.3282 16 14 -2.0741 -11.0155 -2.4393 17 1 -1.0814 -11.7506 -1.6151 18 1 -3.3677 -11.7447 -2.4228 19 1 -1.5801 -10.9145 -3.8361 20 6 2.1460 -0.9281 1.0603 21 1 3.1590 -0.6486 1.3497 22 6 1.2329 -1.1798 2.2620 23 1 -0.3633 0.3314 0.9728 24 1 -0.3633 0.6769 -0.7733 25 1 -0.3633 -1.0081 -0.1995 26 1 3.1591 -0.6514 -1.3482 27 1 1.4945 -1.1106 -1.9134 28 1 0.4351 -2.8360 0.9299 29 1 1.3842 -4.0690 -1.5736 30 1 1.7513 -4.6830 0.0563 31 1 -0.6720 -4.9695 0.4952 32 1 -1.0398 -4.3556 -1.1346 33 1 0.2497 -6.2243 -2.1304 34 1 0.6179 -6.8388 -0.5010 35 1 -1.8061 -7.1253 -0.0622 36 1 -2.1736 -6.5106 -1.6918 37 1 -4.2588 -9.5309 -1.3888 38 1 1.5256 -2.1083 2.7524 39 1 1.3232 -0.3530 2.9664 40 1 0.1999 -1.2578 1.9233 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385748420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:07 Heat of formation + Delta-G solvation = -8.636612 kcal Electronic energy + Delta-G solvation = -15495.789340 eV Core-core repulsion = 13116.990195 eV Total energy + Delta-G solvation = -2378.799145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.11045 -35.72260 -33.47074 -31.69665 -30.10633 -29.15600 -27.71143 -24.43769 -23.03222 -22.24419 -21.34643 -20.00167 -17.97212 -16.50070 -16.16704 -15.83809 -14.77358 -14.51864 -14.40921 -13.99339 -13.32401 -12.85959 -12.72756 -12.31985 -12.12590 -12.01046 -11.74898 -11.57649 -11.42017 -11.19469 -10.95519 -10.71014 -10.56642 -10.47613 -10.38876 -10.15813 -9.95189 -9.59554 -9.21630 -8.97657 -8.30354 -8.25181 -5.95330 -3.97540 3.35831 3.39918 3.42588 4.12058 4.40583 4.49339 4.51061 4.75545 4.92128 5.25729 5.38736 5.39861 5.42061 5.45450 5.48945 5.61999 5.69075 5.75550 5.84188 5.88975 5.95077 5.97762 6.10046 6.13674 6.19377 6.35095 6.40503 6.53065 6.58468 6.86414 7.00372 7.13784 7.29651 7.46993 7.73520 7.89936 8.05888 8.48760 9.09793 9.66121 11.16005 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.058916 B = 0.003910 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.136578 B = 7158.716010 C = 7257.416506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.064 0.936 4 C -0.132 4.132 5 C 0.065 3.935 6 H 0.053 0.947 7 N -0.671 5.671 8 C 0.059 3.941 9 C -0.115 4.115 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.521 4.521 13 H 0.053 0.947 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.119 4.119 21 H 0.087 0.913 22 C -0.154 4.154 23 H 0.050 0.950 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.343 0.657 29 H 0.068 0.932 30 H 0.026 0.974 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.260 0.740 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.506 17.013 4.655 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.082 0.918 4 C -0.170 4.170 5 C -0.045 4.045 6 H 0.071 0.929 7 N -0.304 5.304 8 C -0.069 4.069 9 C -0.153 4.153 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.138 4.138 21 H 0.105 0.895 22 C -0.211 4.211 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.110 0.890 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.164 0.836 29 H 0.087 0.913 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.099 17.203 4.088 20.363 hybrid contribution 0.643 -1.400 0.348 1.579 sum 10.742 15.803 4.436 19.617 Atomic orbital electron populations 1.21810 0.93557 1.04354 1.00606 1.22232 0.96518 0.97001 0.95952 0.91774 1.23033 1.00354 0.96111 0.97548 1.22601 0.91624 0.93648 0.96671 0.92870 1.60494 1.24522 1.16430 1.28938 1.22134 0.98041 0.87198 0.99574 1.21637 0.95708 0.96780 1.01210 1.21585 1.00894 0.93136 0.99071 1.19088 0.91176 0.94282 0.97049 1.21260 0.94887 0.98668 1.41095 0.92843 1.25031 0.95286 0.98527 0.95650 1.69963 0.99942 1.36105 1.47578 0.86672 0.77239 0.84516 0.79648 1.20298 1.21295 1.20257 1.22830 0.99512 0.97252 0.94193 0.89475 1.21790 1.00746 1.01245 0.97312 0.93083 0.93367 0.89006 0.90676 0.90589 0.83612 0.91311 0.95610 0.92839 0.91670 0.93461 0.93725 0.96755 0.96605 0.93009 0.92860 0.92579 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.17 37.16 0.30 -1.18 16 2 C -0.10 -0.96 4.47 -89.81 -0.40 -1.36 16 3 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 4 C -0.13 -1.38 7.47 -25.92 -0.19 -1.57 16 5 C 0.07 0.72 4.13 -66.90 -0.28 0.44 16 6 H 0.05 0.61 7.86 -51.93 -0.41 0.20 16 7 N -0.67 -8.39 4.21 -105.86 -0.45 -8.83 16 8 C 0.06 0.85 5.53 -3.82 -0.02 0.83 16 9 C -0.12 -2.00 5.47 -26.73 -0.15 -2.14 16 10 C -0.11 -2.29 5.15 -26.73 -0.14 -2.42 16 11 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 12 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 16 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 C -0.12 -1.12 4.29 -89.80 -0.39 -1.51 16 21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.15 -1.38 7.93 37.16 0.29 -1.08 16 23 H 0.05 0.48 7.04 -51.93 -0.37 0.11 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 1.08 5.79 -51.93 -0.30 0.78 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 28 H 0.34 4.10 6.17 -39.29 -0.24 3.86 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.37 8.13 -51.93 -0.42 -0.05 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.05 0.48 8.13 -51.93 -0.42 0.06 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.68 4.95 -51.93 -0.26 0.43 16 LS Contribution 310.44 15.07 4.68 4.68 Total: -1.00 -29.75 310.44 -9.02 -38.77 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -7.45 Total: -1.39 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -1.51 Total: -23.48 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.29 Total: -35.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.75 -9.02 -38.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385748420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.136 kcal (2) G-P(sol) polarization free energy of solvation -29.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds