Wall clock time and date at job start Mon Mar 30 2020 03:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 112.85715 * 2 1 4 4 C 1.53780 * 113.61393 * 228.68991 * 2 1 3 5 5 C 1.53786 * 87.08292 * 270.88503 * 4 2 1 6 6 H 1.08993 * 113.69429 * 220.00745 * 5 4 2 7 7 N 1.46906 * 113.61161 * 89.11590 * 5 4 2 8 8 C 1.46898 * 110.99888 * 107.50488 * 7 5 4 9 9 C 1.53007 * 109.46764 * 179.97438 * 8 7 5 10 10 C 1.52996 * 109.47066 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47425 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47110 * 180.02562 * 11 10 9 13 13 H 1.07994 * 120.00430 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99819 * 180.02562 * 12 11 10 15 15 N 1.31522 * 120.00002 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00042 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47311 * 59.99500 * 16 14 12 18 18 H 1.48503 * 109.46920 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.46818 * 299.99460 * 16 14 12 20 20 C 1.53780 * 87.07926 * 334.56872 * 5 4 2 21 21 H 1.08997 * 113.61463 * 270.88050 * 20 5 4 22 22 C 1.53006 * 113.61443 * 140.06259 * 20 5 4 23 23 H 1.09002 * 109.46898 * 288.81174 * 1 2 3 24 24 H 1.09005 * 109.46890 * 48.80321 * 1 2 3 25 25 H 1.08997 * 109.47187 * 168.80506 * 1 2 3 26 26 H 1.09002 * 113.61686 * 156.34205 * 4 2 1 27 27 H 1.08998 * 113.61586 * 25.43387 * 4 2 1 28 28 H 1.00902 * 110.99923 * 231.46429 * 7 5 4 29 29 H 1.08995 * 109.47296 * 299.99911 * 8 7 5 30 30 H 1.08997 * 109.47334 * 60.00212 * 8 7 5 31 31 H 1.09004 * 109.47056 * 299.99764 * 9 8 7 32 32 H 1.08997 * 109.46954 * 60.00063 * 9 8 7 33 33 H 1.09004 * 109.47365 * 300.00747 * 10 9 8 34 34 H 1.09005 * 109.47287 * 59.99608 * 10 9 8 35 35 H 1.09004 * 109.46871 * 299.99945 * 11 10 9 36 36 H 1.08997 * 109.46779 * 60.00024 * 11 10 9 37 37 H 0.96999 * 119.99593 * 180.02562 * 15 14 12 38 38 H 1.09005 * 109.46738 * 60.00003 * 22 20 5 39 39 H 1.09001 * 109.46922 * 179.97438 * 22 20 5 40 40 H 1.08992 * 109.47047 * 299.99873 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9534 1.0044 0.0000 4 6 2.1460 -0.9302 -1.0584 5 6 2.0929 -2.0426 0.0021 6 1 2.9709 -2.6884 0.0037 7 7 0.8312 -2.7952 0.0028 8 6 1.0222 -4.1434 -0.5482 9 6 -0.3104 -4.8950 -0.5304 10 6 -0.1118 -6.2991 -1.1048 11 6 -1.4444 -7.0505 -1.0877 12 6 -1.2485 -8.4336 -1.6529 13 1 -0.2714 -8.7455 -1.9909 14 6 -2.3170 -9.3007 -1.7394 15 7 -3.5071 -8.9208 -1.3282 16 14 -2.0741 -11.0155 -2.4393 17 1 -1.0814 -11.7506 -1.6151 18 1 -3.3677 -11.7447 -2.4228 19 1 -1.5801 -10.9145 -3.8361 20 6 2.1460 -0.9281 1.0603 21 1 3.1590 -0.6486 1.3497 22 6 1.2329 -1.1798 2.2620 23 1 -0.3633 0.3314 0.9728 24 1 -0.3633 0.6769 -0.7733 25 1 -0.3633 -1.0081 -0.1995 26 1 3.1591 -0.6514 -1.3482 27 1 1.4945 -1.1106 -1.9134 28 1 0.4351 -2.8360 0.9299 29 1 1.3842 -4.0690 -1.5736 30 1 1.7513 -4.6830 0.0563 31 1 -0.6720 -4.9695 0.4952 32 1 -1.0398 -4.3556 -1.1346 33 1 0.2497 -6.2243 -2.1304 34 1 0.6179 -6.8388 -0.5010 35 1 -1.8061 -7.1253 -0.0622 36 1 -2.1736 -6.5106 -1.6918 37 1 -4.2588 -9.5309 -1.3888 38 1 1.5256 -2.1083 2.7524 39 1 1.3232 -0.3530 2.9664 40 1 0.1999 -1.2578 1.9233 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385748420.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:07 Heat of formation + Delta-G solvation = -24.503408 kcal Electronic energy + Delta-G solvation = -15496.477376 eV Core-core repulsion = 13116.990195 eV Total energy + Delta-G solvation = -2379.487181 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.93723 -37.18320 -35.28303 -33.44556 -30.84134 -30.29947 -29.19251 -26.22871 -23.79094 -23.46326 -22.65160 -21.74069 -18.83335 -18.39731 -17.29893 -16.98457 -16.50277 -15.94670 -15.51859 -14.94240 -14.50783 -14.38946 -14.07557 -13.66521 -13.43069 -13.24111 -12.89303 -12.77507 -12.71284 -12.48073 -12.37419 -12.29898 -12.08006 -11.89909 -11.48109 -11.38731 -11.31177 -11.09771 -10.94322 -10.66245 -10.54657 -9.23790 -8.19543 -6.31251 1.39565 1.43092 1.51090 2.41219 3.13017 3.14108 3.61113 3.72755 3.94151 4.08325 4.13775 4.29427 4.51068 4.54989 4.59994 4.63948 4.68447 4.74050 4.85578 4.93239 4.95312 5.01590 5.07232 5.14633 5.19793 5.24758 5.25656 5.30212 5.35581 5.45809 5.55149 5.61550 5.72723 5.78212 5.87012 6.22225 6.26183 6.49196 6.86024 7.38040 8.92169 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.058916 B = 0.003910 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.136578 B = 7158.716010 C = 7257.416506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.076 0.924 4 C -0.132 4.132 5 C 0.057 3.943 6 H 0.052 0.948 7 N -0.672 5.672 8 C 0.072 3.928 9 C -0.104 4.104 10 C -0.097 4.097 11 C 0.023 3.977 12 C -0.547 4.547 13 H 0.059 0.941 14 C -0.002 4.002 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.267 1.267 20 C -0.111 4.111 21 H 0.101 0.899 22 C -0.153 4.153 23 H 0.058 0.942 24 H 0.047 0.953 25 H 0.074 0.926 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.346 0.654 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.049 0.951 35 H -0.010 1.010 36 H -0.011 1.011 37 H 0.264 0.736 38 H 0.052 0.948 39 H 0.067 0.933 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.031 17.241 4.759 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.094 0.906 4 C -0.171 4.171 5 C -0.053 4.053 6 H 0.070 0.930 7 N -0.306 5.306 8 C -0.057 4.057 9 C -0.142 4.142 10 C -0.135 4.135 11 C -0.014 4.014 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.199 4.199 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.129 4.129 21 H 0.120 0.880 22 C -0.211 4.211 23 H 0.077 0.923 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.108 0.892 27 H 0.077 0.923 28 H 0.167 0.833 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.008 0.992 36 H 0.007 0.993 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.086 0.914 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.638 17.447 4.195 21.388 hybrid contribution 0.137 -1.431 0.327 1.474 sum 11.776 16.016 4.522 20.387 Atomic orbital electron populations 1.21776 0.94150 1.03258 1.01044 1.22228 0.96034 0.97598 0.95700 0.90552 1.23067 1.00948 0.96107 0.96928 1.22693 0.90633 0.93934 0.98088 0.92976 1.60449 1.25679 1.15235 1.29241 1.21888 0.95967 0.88029 0.99854 1.21455 0.97356 0.94842 1.00590 1.21394 0.97708 0.94675 0.99708 1.19021 0.93408 0.94242 0.94762 1.21722 0.95375 0.99929 1.41473 0.92234 1.26019 0.94833 1.03287 0.95807 1.70102 1.00911 1.37868 1.48566 0.85488 0.77539 0.78718 0.79223 1.19103 1.20725 1.19140 1.22826 1.00333 0.95952 0.93825 0.88041 1.21781 1.00205 1.01713 0.97362 0.92318 0.93352 0.90758 0.89179 0.92252 0.83262 0.91465 0.95092 0.92845 0.92631 0.93204 0.93178 0.99170 0.99260 0.92756 0.92937 0.91411 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.17 71.98 0.59 -2.20 16 2 C -0.10 -1.70 4.47 -10.27 -0.05 -1.74 16 3 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.13 -2.55 7.47 31.12 0.23 -2.31 16 5 C 0.06 1.16 4.13 45.44 0.19 1.35 16 6 H 0.05 1.09 7.86 -2.39 -0.02 1.07 16 7 N -0.67 -16.20 4.21 -488.84 -2.06 -18.26 16 8 C 0.07 2.00 5.53 86.31 0.48 2.48 16 9 C -0.10 -3.61 5.47 30.60 0.17 -3.45 16 10 C -0.10 -4.08 5.15 30.59 0.16 -3.93 16 11 C 0.02 1.25 4.97 29.85 0.15 1.39 16 12 C -0.55 -32.10 9.11 25.60 0.23 -31.87 16 13 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 14 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 15 N -0.93 -58.17 13.29 21.45 0.28 -57.88 16 16 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 20 C -0.11 -1.84 4.29 -10.26 -0.04 -1.88 16 21 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 22 C -0.15 -2.46 7.93 71.98 0.57 -1.89 16 23 H 0.06 1.02 7.04 -2.39 -0.02 1.00 16 24 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.07 1.71 5.79 -2.39 -0.01 1.69 16 26 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 28 H 0.35 7.95 6.17 -89.69 -0.55 7.40 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.03 0.84 8.13 -2.39 -0.02 0.82 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.05 2.04 8.14 -2.38 -0.02 2.03 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.05 0.85 8.13 -2.38 -0.02 0.83 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.07 1.15 4.95 -2.39 -0.01 1.14 16 Total: -1.00 -63.54 310.44 3.81 -59.73 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.42 Total: 13.09 kcal Atomic # 6 Polarization: -46.82 SS G_CDS: 3.14 Total: -43.69 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -1.77 Total: -76.14 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -63.54 3.81 -59.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385748420.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.230 kcal (2) G-P(sol) polarization free energy of solvation -63.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds