Wall clock time and date at job start Mon Mar 30 2020 03:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46101 * 2 1 4 4 C 1.53034 * 109.46394 * 240.02558 * 2 1 3 5 5 C 1.53123 * 109.27951 * 180.80236 * 4 2 1 6 6 C 1.53116 * 109.15868 * 57.65751 * 5 4 2 7 7 C 1.53038 * 109.28037 * 302.34300 * 6 5 4 8 8 N 1.46849 * 109.46310 * 119.97245 * 2 1 3 9 9 C 1.46897 * 111.00364 * 305.85619 * 8 2 1 10 10 C 1.52995 * 109.47662 * 165.48593 * 9 8 2 11 11 C 1.53001 * 109.47649 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47175 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46758 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99741 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00121 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00178 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46690 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47154 * 119.99677 * 17 15 13 20 20 H 1.48496 * 109.47099 * 240.00287 * 17 15 13 21 21 H 1.09002 * 109.47282 * 307.31325 * 1 2 3 22 22 H 1.08996 * 109.47735 * 67.32040 * 1 2 3 23 23 H 1.09004 * 109.46830 * 187.32223 * 1 2 3 24 24 H 1.08999 * 109.50510 * 300.74846 * 4 2 1 25 25 H 1.09007 * 109.50208 * 60.86594 * 4 2 1 26 26 H 1.09000 * 109.52306 * 177.56216 * 5 4 2 27 27 H 1.08997 * 109.52090 * 297.75019 * 5 4 2 28 28 H 1.09002 * 109.50170 * 62.28549 * 6 5 4 29 29 H 1.08999 * 109.50558 * 182.36721 * 6 5 4 30 30 H 1.09001 * 109.46614 * 299.17128 * 7 6 5 31 31 H 1.09000 * 109.46411 * 179.19489 * 7 6 5 32 32 H 1.09002 * 109.46965 * 285.49324 * 9 8 2 33 33 H 1.09005 * 109.47047 * 45.48854 * 9 8 2 34 34 H 1.09005 * 109.47281 * 300.00834 * 10 9 8 35 35 H 1.09005 * 109.46676 * 60.00034 * 10 9 8 36 36 H 1.09002 * 109.47018 * 300.00755 * 11 10 9 37 37 H 1.09002 * 109.46508 * 60.00310 * 11 10 9 38 38 H 1.09000 * 109.47220 * 300.00018 * 12 11 10 39 39 H 1.08998 * 109.46615 * 60.00261 * 12 11 10 40 40 H 0.96999 * 119.99927 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7360 -1.2356 6 6 4.0548 -1.4187 0.0467 7 6 3.4865 -0.6776 1.2591 8 7 2.0193 -0.6917 1.1994 9 6 1.4373 -0.1106 2.4166 10 6 1.6698 -1.0576 3.5955 11 6 1.0642 -0.4521 4.8634 12 6 1.2973 -1.3989 6.0424 13 6 0.7002 -0.8027 7.2910 14 1 0.2045 0.1559 7.2480 15 6 0.7877 -1.4805 8.4885 16 7 1.3918 -2.6475 8.5409 17 14 0.0483 -0.7412 10.0365 18 1 -0.5696 0.5698 9.7125 19 1 -0.9879 -1.6575 10.5765 20 1 1.1153 -0.5476 11.0510 21 1 -0.3634 0.6229 0.8173 22 1 -0.3634 0.3962 -0.9481 23 1 -0.3633 -1.0193 0.1310 24 1 1.6659 -1.7447 -1.2576 25 1 1.6895 -0.1981 -2.1399 26 1 3.9380 -1.2862 -2.1020 27 1 3.9456 0.2871 -1.2672 28 1 3.7125 -2.4535 0.0594 29 1 5.1439 -1.3952 0.0829 30 1 3.8403 0.3534 1.2532 31 1 3.8175 -1.1699 2.1736 32 1 1.9105 0.8495 2.6229 33 1 0.3666 0.0353 2.2735 34 1 1.1967 -2.0177 3.3891 35 1 2.7405 -1.2036 3.7386 36 1 1.5377 0.5078 5.0695 37 1 -0.0065 -0.3058 4.7205 38 1 0.8240 -2.3590 5.8365 39 1 2.3680 -1.5447 6.1850 40 1 1.4537 -3.1242 9.3835 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385834623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:06 Heat of formation + Delta-G solvation = -34.341658 kcal Electronic energy + Delta-G solvation = -15726.372925 eV Core-core repulsion = 13346.459126 eV Total energy + Delta-G solvation = -2379.913800 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.34022 -35.21238 -33.41278 -32.60784 -31.58546 -28.34856 -27.02311 -25.05126 -23.41030 -21.67829 -20.80855 -19.93791 -19.57933 -16.17825 -15.88246 -15.42420 -14.70696 -14.45554 -14.41202 -14.12442 -13.71114 -13.19751 -12.57811 -12.41920 -12.01942 -11.99301 -11.87136 -11.61298 -11.42877 -11.05411 -10.95833 -10.82239 -10.64422 -10.47729 -10.39946 -10.20854 -10.03961 -9.54141 -9.20545 -8.94797 -8.29780 -8.15589 -5.94636 -3.96632 3.33869 3.41039 3.45441 3.95057 4.50358 4.70737 4.74126 4.83683 5.05321 5.28140 5.31093 5.40399 5.41463 5.48589 5.52513 5.64545 5.70923 5.78989 5.81661 5.83840 5.92606 6.00921 6.07350 6.12205 6.15214 6.22676 6.34549 6.38716 6.60957 6.88856 7.04632 7.17403 7.28705 7.35897 7.75440 7.91755 8.07059 8.50032 9.11231 9.67114 11.16779 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.053791 B = 0.004388 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.403472 B = 6379.763110 C = 6706.510092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.080 3.920 3 H 0.034 0.966 4 C -0.111 4.111 5 C -0.121 4.121 6 C -0.117 4.117 7 C 0.053 3.947 8 N -0.534 5.534 9 C 0.050 3.950 10 C -0.111 4.111 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.058 0.942 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.081 0.919 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.544 4.493 -19.304 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.028 4.028 3 H 0.052 0.948 4 C -0.149 4.149 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.075 4.075 8 N -0.259 5.259 9 C -0.077 4.077 10 C -0.149 4.149 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.077 0.923 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.046 0.954 31 H 0.099 0.901 32 H 0.046 0.954 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.436 3.876 -19.221 19.758 hybrid contribution -0.065 1.198 1.034 1.583 sum 2.371 5.074 -18.187 19.030 Atomic orbital electron populations 1.21936 0.94490 1.02874 1.01363 1.21581 0.95318 0.95154 0.90762 0.94770 1.21628 0.95392 1.01478 0.96367 1.21583 0.95962 1.00434 0.97899 1.21588 0.99495 1.00405 0.93998 1.22122 0.87663 0.98571 0.99136 1.61992 1.06845 1.55100 1.01957 1.22332 0.99833 0.96104 0.89403 1.21643 1.00908 0.98825 0.93555 1.21599 0.99004 0.99512 0.94616 1.19093 0.96902 0.94352 0.91271 1.21339 1.35965 1.04937 0.93461 0.92745 1.25034 0.95518 0.94955 0.99037 1.69982 1.43601 1.13989 1.26014 0.86565 0.78948 0.79255 0.83408 1.19778 1.21028 1.21062 0.92323 0.92502 0.91500 0.91062 0.91975 0.92055 0.92564 0.91053 0.91816 0.95401 0.90069 0.95389 0.90466 0.91785 0.92758 0.93795 0.93543 0.96610 0.96764 0.93137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.56 37.16 0.32 -1.28 16 2 C 0.08 0.93 2.44 -67.72 -0.17 0.76 16 3 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 4 C -0.11 -1.10 5.37 -26.65 -0.14 -1.24 16 5 C -0.12 -1.14 6.00 -26.61 -0.16 -1.30 16 6 C -0.12 -1.24 6.09 -26.65 -0.16 -1.40 16 7 C 0.05 0.67 5.30 -3.83 -0.02 0.65 16 8 N -0.53 -7.27 4.46 -226.69 -1.01 -8.28 16 9 C 0.05 0.76 4.75 -3.83 -0.02 0.74 16 10 C -0.11 -2.00 5.24 -26.73 -0.14 -2.14 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 17 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 H 0.06 0.65 6.46 -51.93 -0.34 0.31 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 1.11 6.42 -51.93 -0.33 0.78 16 32 H 0.03 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.08 1.13 5.61 -51.93 -0.29 0.83 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.05 0.98 6.59 -51.93 -0.34 0.64 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -30.33 308.39 -9.43 -39.76 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -7.60 Total: -5.17 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -1.18 Total: -21.16 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.27 Total: -35.12 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.33 -9.43 -39.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385834623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.421 kcal (2) G-P(sol) polarization free energy of solvation -30.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds