Wall clock time and date at job start Mon Mar 30 2020 03:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46101 * 2 1 4 4 C 1.53034 * 109.46394 * 240.02558 * 2 1 3 5 5 C 1.53123 * 109.27951 * 180.80236 * 4 2 1 6 6 C 1.53116 * 109.15868 * 57.65751 * 5 4 2 7 7 C 1.53038 * 109.28037 * 302.34300 * 6 5 4 8 8 N 1.46849 * 109.46310 * 119.97245 * 2 1 3 9 9 C 1.46897 * 111.00364 * 305.85619 * 8 2 1 10 10 C 1.52995 * 109.47662 * 165.48593 * 9 8 2 11 11 C 1.53001 * 109.47649 * 179.97438 * 10 9 8 12 12 C 1.53001 * 109.47175 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.46758 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99741 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00121 * 359.97438 * 15 13 12 17 17 Si 1.86804 * 120.00178 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46690 * 359.97438 * 17 15 13 19 19 H 1.48495 * 109.47154 * 119.99677 * 17 15 13 20 20 H 1.48496 * 109.47099 * 240.00287 * 17 15 13 21 21 H 1.09002 * 109.47282 * 307.31325 * 1 2 3 22 22 H 1.08996 * 109.47735 * 67.32040 * 1 2 3 23 23 H 1.09004 * 109.46830 * 187.32223 * 1 2 3 24 24 H 1.08999 * 109.50510 * 300.74846 * 4 2 1 25 25 H 1.09007 * 109.50208 * 60.86594 * 4 2 1 26 26 H 1.09000 * 109.52306 * 177.56216 * 5 4 2 27 27 H 1.08997 * 109.52090 * 297.75019 * 5 4 2 28 28 H 1.09002 * 109.50170 * 62.28549 * 6 5 4 29 29 H 1.08999 * 109.50558 * 182.36721 * 6 5 4 30 30 H 1.09001 * 109.46614 * 299.17128 * 7 6 5 31 31 H 1.09000 * 109.46411 * 179.19489 * 7 6 5 32 32 H 1.09002 * 109.46965 * 285.49324 * 9 8 2 33 33 H 1.09005 * 109.47047 * 45.48854 * 9 8 2 34 34 H 1.09005 * 109.47281 * 300.00834 * 10 9 8 35 35 H 1.09005 * 109.46676 * 60.00034 * 10 9 8 36 36 H 1.09002 * 109.47018 * 300.00755 * 11 10 9 37 37 H 1.09002 * 109.46508 * 60.00310 * 11 10 9 38 38 H 1.09000 * 109.47220 * 300.00018 * 12 11 10 39 39 H 1.08998 * 109.46615 * 60.00261 * 12 11 10 40 40 H 0.96999 * 119.99927 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7360 -1.2356 6 6 4.0548 -1.4187 0.0467 7 6 3.4865 -0.6776 1.2591 8 7 2.0193 -0.6917 1.1994 9 6 1.4373 -0.1106 2.4166 10 6 1.6698 -1.0576 3.5955 11 6 1.0642 -0.4521 4.8634 12 6 1.2973 -1.3989 6.0424 13 6 0.7002 -0.8027 7.2910 14 1 0.2045 0.1559 7.2480 15 6 0.7877 -1.4805 8.4885 16 7 1.3918 -2.6475 8.5409 17 14 0.0483 -0.7412 10.0365 18 1 -0.5696 0.5698 9.7125 19 1 -0.9879 -1.6575 10.5765 20 1 1.1153 -0.5476 11.0510 21 1 -0.3634 0.6229 0.8173 22 1 -0.3634 0.3962 -0.9481 23 1 -0.3633 -1.0193 0.1310 24 1 1.6659 -1.7447 -1.2576 25 1 1.6895 -0.1981 -2.1399 26 1 3.9380 -1.2862 -2.1020 27 1 3.9456 0.2871 -1.2672 28 1 3.7125 -2.4535 0.0594 29 1 5.1439 -1.3952 0.0829 30 1 3.8403 0.3534 1.2532 31 1 3.8175 -1.1699 2.1736 32 1 1.9105 0.8495 2.6229 33 1 0.3666 0.0353 2.2735 34 1 1.1967 -2.0177 3.3891 35 1 2.7405 -1.2036 3.7386 36 1 1.5377 0.5078 5.0695 37 1 -0.0065 -0.3058 4.7205 38 1 0.8240 -2.3590 5.8365 39 1 2.3680 -1.5447 6.1850 40 1 1.4537 -3.1242 9.3835 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385834623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:05 Heat of formation + Delta-G solvation = -51.550551 kcal Electronic energy + Delta-G solvation = -15727.119159 eV Core-core repulsion = 13346.459126 eV Total energy + Delta-G solvation = -2380.660033 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32068 -36.77988 -35.04522 -33.77188 -33.07984 -30.02581 -27.97631 -26.65218 -24.78506 -22.94995 -22.00282 -21.57793 -20.52430 -18.43017 -16.93844 -16.61817 -16.41300 -15.97859 -15.32982 -15.13843 -14.87536 -14.44441 -14.23956 -13.87236 -13.45723 -13.15783 -13.06930 -12.82708 -12.81193 -12.70860 -12.31382 -12.20536 -12.06366 -11.88760 -11.59284 -11.48168 -11.34171 -11.18846 -11.01720 -10.85468 -10.56200 -9.22159 -8.19998 -6.31710 1.39472 1.40117 1.53677 2.40869 2.91913 3.12690 3.86248 3.88147 3.95954 4.08614 4.20024 4.30245 4.43901 4.46499 4.55034 4.56919 4.63151 4.70620 4.76079 4.87792 4.94163 4.96523 5.00138 5.08722 5.11718 5.23616 5.25247 5.26622 5.28252 5.36163 5.38024 5.52443 5.55595 5.77118 5.86448 6.19505 6.24878 6.30123 6.85870 7.37754 8.92223 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.053791 B = 0.004388 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.403472 B = 6379.763110 C = 6706.510092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 H 0.035 0.965 4 C -0.108 4.108 5 C -0.119 4.119 6 C -0.114 4.114 7 C 0.050 3.950 8 N -0.544 5.544 9 C 0.061 3.939 10 C -0.100 4.100 11 C -0.096 4.096 12 C 0.023 3.977 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.277 1.277 21 H 0.052 0.948 22 H 0.078 0.922 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.063 0.937 32 H 0.029 0.971 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.048 0.952 37 H 0.052 0.948 38 H -0.011 1.011 39 H -0.012 1.012 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 5.789 -20.269 21.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 H 0.053 0.947 4 C -0.146 4.146 5 C -0.156 4.156 6 C -0.152 4.152 7 C -0.078 4.078 8 N -0.270 5.270 9 C -0.067 4.067 10 C -0.138 4.138 11 C -0.134 4.134 12 C -0.014 4.014 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.200 4.200 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.203 1.203 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.048 0.952 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.007 0.993 39 H 0.006 0.994 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.977 5.179 -20.208 20.954 hybrid contribution 0.106 0.755 1.318 1.523 sum 2.083 5.934 -18.890 19.909 Atomic orbital electron populations 1.21925 0.93878 1.02280 1.02353 1.21711 0.95873 0.95150 0.90381 0.94738 1.21632 0.95709 1.01072 0.96176 1.21583 0.95621 1.00773 0.97629 1.21578 1.00218 0.99668 0.93755 1.22159 0.87322 0.98775 0.99537 1.61970 1.07360 1.55553 1.02090 1.22118 1.00470 0.95061 0.89047 1.21459 1.00037 0.98856 0.93461 1.21401 0.99678 0.98369 0.93971 1.19017 0.94700 0.94399 0.93267 1.21769 1.36394 1.05395 0.94658 0.92181 1.26028 0.95766 0.95295 1.02920 1.70117 1.44684 1.15474 1.27260 0.85368 0.78197 0.78774 0.78521 1.18520 1.20243 1.20285 0.92890 0.90359 0.92463 0.91777 0.89946 0.90415 0.92091 0.91922 0.90528 0.95243 0.91805 0.95283 0.89774 0.92846 0.93340 0.93333 0.92960 0.99258 0.99370 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.56 71.98 0.62 -2.26 16 2 C 0.08 1.64 2.44 44.94 0.11 1.75 16 3 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 4 C -0.11 -1.89 5.37 30.65 0.16 -1.72 16 5 C -0.12 -1.95 6.00 30.67 0.18 -1.77 16 6 C -0.11 -2.28 6.09 30.65 0.19 -2.09 16 7 C 0.05 1.24 5.30 86.32 0.46 1.70 16 8 N -0.54 -14.41 4.46 -871.10 -3.88 -18.29 16 9 C 0.06 1.79 4.75 86.30 0.41 2.20 16 10 C -0.10 -3.64 5.24 30.59 0.16 -3.48 16 11 C -0.10 -4.14 5.15 30.59 0.16 -3.98 16 12 C 0.02 1.29 4.97 29.85 0.15 1.44 16 13 C -0.54 -32.12 9.11 25.60 0.23 -31.88 16 14 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 15 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 16 N -0.93 -58.52 13.29 21.45 0.28 -58.23 16 17 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H 0.05 1.08 6.46 -2.39 -0.02 1.07 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 25 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 1.78 6.42 -2.39 -0.02 1.76 16 32 H 0.03 0.85 8.07 -2.39 -0.02 0.83 16 33 H 0.08 2.37 5.61 -2.38 -0.01 2.36 16 34 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.05 1.80 6.59 -2.38 -0.02 1.79 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 39 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -65.12 308.39 2.68 -62.44 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.96 Total: 6.66 kcal Atomic # 6 Polarization: -43.09 SS G_CDS: 3.29 Total: -39.80 kcal Atomic # 7 Polarization: -72.92 SS G_CDS: -3.60 Total: -76.52 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -65.12 2.68 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385834623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.892 kcal (2) G-P(sol) polarization free energy of solvation -65.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds