Wall clock time and date at job start Mon Mar 30 2020 03:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50788 * 2 1 4 4 C 1.53120 * 109.50505 * 120.07856 * 2 1 3 5 5 C 1.53119 * 109.16202 * 177.63880 * 4 2 1 6 6 C 1.53044 * 109.27589 * 302.34077 * 5 4 2 7 7 N 1.46847 * 109.51335 * 59.18419 * 6 5 4 8 8 C 1.46899 * 110.99862 * 174.15436 * 7 6 5 9 9 C 1.52999 * 109.47036 * 66.05037 * 8 7 6 10 10 C 1.52999 * 109.46926 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46965 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.46975 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99973 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99837 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00038 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00034 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47208 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46934 * 119.99974 * 16 14 12 19 19 H 1.48493 * 109.47277 * 239.99975 * 16 14 12 20 20 C 1.46847 * 111.20163 * 298.24410 * 7 6 5 21 21 H 1.09004 * 109.47022 * 299.91995 * 1 2 3 22 22 H 1.08993 * 109.47496 * 59.92291 * 1 2 3 23 23 H 1.09008 * 109.46952 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.52850 * 57.72965 * 4 2 1 25 25 H 1.09003 * 109.57279 * 297.56752 * 4 2 1 26 26 H 1.09000 * 109.50507 * 182.40742 * 5 4 2 27 27 H 1.08996 * 109.50916 * 62.28058 * 5 4 2 28 28 H 1.09002 * 109.46396 * 179.19729 * 6 5 4 29 29 H 1.08994 * 109.46485 * 299.17654 * 6 5 4 30 30 H 1.09004 * 109.46859 * 186.04870 * 8 7 6 31 31 H 1.08996 * 109.47621 * 306.04495 * 8 7 6 32 32 H 1.08999 * 109.46741 * 299.99794 * 9 8 7 33 33 H 1.08997 * 109.47402 * 59.99850 * 9 8 7 34 34 H 1.08999 * 109.47343 * 299.99549 * 10 9 8 35 35 H 1.08996 * 109.47800 * 60.00057 * 10 9 8 36 36 H 1.08999 * 109.46834 * 299.99998 * 11 10 9 37 37 H 1.08997 * 109.46747 * 60.00076 * 11 10 9 38 38 H 0.97003 * 120.00019 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.46836 * 301.74653 * 20 7 6 40 40 H 1.08994 * 109.46332 * 181.76669 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7705 1.2115 6 6 4.0238 -1.4716 -0.0714 7 7 3.5101 -0.7410 -1.2370 8 6 4.0388 -1.3044 -2.4864 9 6 3.4953 -2.7218 -2.6768 10 6 4.0455 -3.3084 -3.9784 11 6 3.5024 -4.7262 -4.1685 12 6 4.0438 -5.3037 -5.4509 13 1 4.7091 -4.7182 -6.0683 14 6 3.6908 -6.5798 -5.8354 15 7 2.8811 -7.2929 -5.0833 16 14 4.3613 -7.2954 -7.4253 17 1 5.2436 -6.2987 -8.0834 18 1 5.1403 -8.5237 -7.1254 19 1 3.2337 -7.6331 -8.3304 20 6 2.0417 -0.7233 -1.2478 21 1 -0.3633 0.5126 0.8907 22 1 -0.3634 0.5150 -0.8892 23 1 -0.3633 -1.0278 -0.0005 24 1 1.6459 -1.7389 1.2693 25 1 1.7151 -0.1876 2.1405 26 1 3.9396 -1.3218 2.0767 27 1 3.9673 0.2447 1.2305 28 1 5.1130 -1.4942 -0.1081 29 1 3.6388 -2.4912 -0.0834 30 1 3.7298 -0.6810 -3.3255 31 1 5.1273 -1.3359 -2.4388 32 1 3.8043 -3.3452 -1.8378 33 1 2.4068 -2.6903 -2.7245 34 1 3.7361 -2.6850 -4.8173 35 1 5.1339 -3.3400 -3.9313 36 1 3.8122 -5.3494 -3.3296 37 1 2.4139 -4.6950 -4.2156 38 1 2.6325 -8.1905 -5.3540 39 1 1.6661 -1.7466 -1.2540 40 1 1.6913 -0.2025 -2.1388 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385836312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:39 Heat of formation + Delta-G solvation = -38.964673 kcal Electronic energy + Delta-G solvation = -15764.962318 eV Core-core repulsion = 13384.848050 eV Total energy + Delta-G solvation = -2380.114269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.34037 -35.54841 -33.64831 -32.23806 -31.48126 -28.21122 -26.62644 -25.29495 -23.33164 -22.10025 -20.92632 -20.27610 -19.13655 -16.21718 -15.67378 -15.31447 -14.67820 -14.53661 -14.36935 -14.10734 -13.84400 -13.01934 -12.62681 -12.50723 -12.32105 -11.91671 -11.80176 -11.63646 -11.57077 -11.08694 -10.94154 -10.72975 -10.50718 -10.48487 -10.34871 -10.30391 -10.19287 -9.60913 -9.38135 -9.04473 -8.33251 -8.00152 -5.97963 -4.00223 3.31823 3.39082 3.43628 4.05989 4.47598 4.68645 4.82161 4.85176 5.09016 5.36363 5.37442 5.40225 5.44907 5.51312 5.54659 5.59120 5.71476 5.75110 5.83367 5.87685 5.93308 5.97918 6.05364 6.09206 6.18409 6.19403 6.34022 6.39109 6.54503 6.77901 6.94409 7.16002 7.25542 7.28046 7.70778 7.85915 8.02834 8.46131 9.07581 9.63864 11.13445 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046079 B = 0.004513 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.510475 B = 6202.320054 C = 6359.755984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.116 4.116 5 C -0.116 4.116 6 C 0.050 3.950 7 N -0.539 5.539 8 C 0.054 3.946 9 C -0.154 4.154 10 C -0.106 4.106 11 C 0.021 3.979 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.056 3.944 21 H 0.054 0.946 22 H 0.055 0.945 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.259 0.741 39 H 0.041 0.959 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 14.177 11.736 18.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.108 4.108 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.154 4.154 6 C -0.078 4.078 7 N -0.262 5.262 8 C -0.074 4.074 9 C -0.193 4.193 10 C -0.145 4.145 11 C -0.017 4.017 12 C -0.557 4.557 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.072 4.072 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.547 14.507 11.785 18.754 hybrid contribution 0.013 -1.465 -0.965 1.754 sum -1.534 13.042 10.819 17.015 Atomic orbital electron populations 1.21802 0.95186 1.01914 1.01572 1.21165 0.94938 1.00104 0.94592 0.90700 1.21646 0.95750 1.00527 0.97491 1.21581 0.95723 1.01278 0.96800 1.22098 0.99795 0.95623 0.90247 1.62212 1.07870 1.53501 1.02626 1.22286 0.99729 0.94321 0.91033 1.22276 1.00763 0.96261 0.99994 1.21546 0.99381 0.99297 0.94236 1.19102 0.96122 0.89843 0.96589 1.21334 1.28331 0.99364 1.06702 0.92667 1.25040 0.95230 0.97198 0.97084 1.69982 1.35183 1.10591 1.37908 0.86551 0.78817 0.79064 0.83675 1.19719 1.21027 1.21016 1.22153 0.87814 0.99348 0.97871 0.92723 0.92581 0.92666 0.92210 0.92152 0.91825 0.91417 0.90996 0.94339 0.90938 0.90999 0.92603 0.92425 0.93458 0.93497 0.96872 0.96863 0.93117 0.94128 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.20 37.16 0.34 -1.03 16 2 C -0.09 -0.95 2.88 -90.54 -0.26 -1.21 16 3 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.12 -1.19 5.29 -26.61 -0.14 -1.33 16 5 C -0.12 -1.21 6.09 -26.65 -0.16 -1.38 16 6 C 0.05 0.63 5.05 -3.83 -0.02 0.62 16 7 N -0.54 -7.29 4.86 -234.67 -1.14 -8.43 16 8 C 0.05 0.79 5.36 -3.83 -0.02 0.77 16 9 C -0.15 -2.70 4.52 -26.73 -0.12 -2.82 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 11 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 12 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 16 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.06 0.72 4.12 -3.83 -0.02 0.70 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 29 H 0.04 0.53 6.75 -51.93 -0.35 0.18 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 32 H 0.06 1.00 6.68 -51.93 -0.35 0.66 16 33 H 0.06 1.03 6.50 -51.93 -0.34 0.70 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.04 0.57 6.61 -51.93 -0.34 0.23 16 40 H 0.07 0.91 8.12 -51.93 -0.42 0.49 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -30.22 308.89 -9.53 -39.75 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -7.67 Total: -4.60 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.09 Total: -21.55 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: -0.40 Total: -35.25 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.22 -9.53 -39.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385836312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.783 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds