Wall clock time and date at job start Mon Mar 30 2020 03:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50788 * 2 1 4 4 C 1.53120 * 109.50505 * 120.07856 * 2 1 3 5 5 C 1.53119 * 109.16202 * 177.63880 * 4 2 1 6 6 C 1.53044 * 109.27589 * 302.34077 * 5 4 2 7 7 N 1.46847 * 109.51335 * 59.18419 * 6 5 4 8 8 C 1.46899 * 110.99862 * 174.15436 * 7 6 5 9 9 C 1.52999 * 109.47036 * 66.05037 * 8 7 6 10 10 C 1.52999 * 109.46926 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46965 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.46975 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99973 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99837 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00038 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00034 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47208 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46934 * 119.99974 * 16 14 12 19 19 H 1.48493 * 109.47277 * 239.99975 * 16 14 12 20 20 C 1.46847 * 111.20163 * 298.24410 * 7 6 5 21 21 H 1.09004 * 109.47022 * 299.91995 * 1 2 3 22 22 H 1.08993 * 109.47496 * 59.92291 * 1 2 3 23 23 H 1.09008 * 109.46952 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.52850 * 57.72965 * 4 2 1 25 25 H 1.09003 * 109.57279 * 297.56752 * 4 2 1 26 26 H 1.09000 * 109.50507 * 182.40742 * 5 4 2 27 27 H 1.08996 * 109.50916 * 62.28058 * 5 4 2 28 28 H 1.09002 * 109.46396 * 179.19729 * 6 5 4 29 29 H 1.08994 * 109.46485 * 299.17654 * 6 5 4 30 30 H 1.09004 * 109.46859 * 186.04870 * 8 7 6 31 31 H 1.08996 * 109.47621 * 306.04495 * 8 7 6 32 32 H 1.08999 * 109.46741 * 299.99794 * 9 8 7 33 33 H 1.08997 * 109.47402 * 59.99850 * 9 8 7 34 34 H 1.08999 * 109.47343 * 299.99549 * 10 9 8 35 35 H 1.08996 * 109.47800 * 60.00057 * 10 9 8 36 36 H 1.08999 * 109.46834 * 299.99998 * 11 10 9 37 37 H 1.08997 * 109.46747 * 60.00076 * 11 10 9 38 38 H 0.97003 * 120.00019 * 179.97438 * 15 14 12 39 39 H 1.09005 * 109.46836 * 301.74653 * 20 7 6 40 40 H 1.08994 * 109.46332 * 181.76669 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 3.5712 -0.7705 1.2115 6 6 4.0238 -1.4716 -0.0714 7 7 3.5101 -0.7410 -1.2370 8 6 4.0388 -1.3044 -2.4864 9 6 3.4953 -2.7218 -2.6768 10 6 4.0455 -3.3084 -3.9784 11 6 3.5024 -4.7262 -4.1685 12 6 4.0438 -5.3037 -5.4509 13 1 4.7091 -4.7182 -6.0683 14 6 3.6908 -6.5798 -5.8354 15 7 2.8811 -7.2929 -5.0833 16 14 4.3613 -7.2954 -7.4253 17 1 5.2436 -6.2987 -8.0834 18 1 5.1403 -8.5237 -7.1254 19 1 3.2337 -7.6331 -8.3304 20 6 2.0417 -0.7233 -1.2478 21 1 -0.3633 0.5126 0.8907 22 1 -0.3634 0.5150 -0.8892 23 1 -0.3633 -1.0278 -0.0005 24 1 1.6459 -1.7389 1.2693 25 1 1.7151 -0.1876 2.1405 26 1 3.9396 -1.3218 2.0767 27 1 3.9673 0.2447 1.2305 28 1 5.1130 -1.4942 -0.1081 29 1 3.6388 -2.4912 -0.0834 30 1 3.7298 -0.6810 -3.3255 31 1 5.1273 -1.3359 -2.4388 32 1 3.8043 -3.3452 -1.8378 33 1 2.4068 -2.6903 -2.7245 34 1 3.7361 -2.6850 -4.8173 35 1 5.1339 -3.3400 -3.9313 36 1 3.8122 -5.3494 -3.3296 37 1 2.4139 -4.6950 -4.2156 38 1 2.6325 -8.1905 -5.3540 39 1 1.6661 -1.7466 -1.2540 40 1 1.6913 -0.2025 -2.1388 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385836312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:38 Heat of formation + Delta-G solvation = -56.352080 kcal Electronic energy + Delta-G solvation = -15765.716293 eV Core-core repulsion = 13384.848050 eV Total energy + Delta-G solvation = -2380.868243 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36963 -36.94464 -35.36545 -33.74684 -32.73689 -29.91887 -27.53140 -26.85172 -24.89682 -23.15636 -22.16832 -21.93217 -20.19120 -18.46050 -16.76867 -16.55691 -16.42711 -15.93378 -15.46254 -15.18748 -14.94653 -14.45683 -14.08144 -13.86302 -13.50074 -13.44926 -13.19427 -12.90942 -12.79791 -12.62145 -12.40317 -12.21256 -12.01155 -11.87195 -11.58657 -11.41818 -11.30086 -11.22546 -11.18218 -11.04012 -10.59414 -9.19587 -8.22762 -6.35006 1.38093 1.38626 1.52437 2.38932 2.99943 3.09858 3.80895 3.91647 3.95278 4.04154 4.13639 4.24998 4.42304 4.44933 4.53796 4.62157 4.64373 4.72531 4.78815 4.87372 4.92790 4.94358 4.96209 5.01260 5.09496 5.17217 5.23411 5.25083 5.28874 5.30849 5.38432 5.50530 5.55241 5.71463 5.82414 6.13569 6.18464 6.22401 6.82606 7.34909 8.89310 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046079 B = 0.004513 C = 0.004402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.510475 B = 6202.320054 C = 6359.755984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 H 0.079 0.921 4 C -0.116 4.116 5 C -0.111 4.111 6 C 0.046 3.954 7 N -0.536 5.536 8 C 0.062 3.938 9 C -0.141 4.141 10 C -0.094 4.094 11 C 0.023 3.977 12 C -0.544 4.544 13 H 0.061 0.939 14 C -0.003 4.003 15 N -0.936 5.936 16 Si 0.968 3.032 17 H -0.260 1.260 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.054 3.946 21 H 0.070 0.930 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.020 0.980 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.052 0.948 36 H -0.015 1.015 37 H -0.015 1.015 38 H 0.264 0.736 39 H 0.021 0.979 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 15.422 11.640 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.104 4.104 3 H 0.098 0.902 4 C -0.154 4.154 5 C -0.149 4.149 6 C -0.082 4.082 7 N -0.259 5.259 8 C -0.066 4.066 9 C -0.180 4.180 10 C -0.132 4.132 11 C -0.014 4.014 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.200 4.200 15 N -0.577 5.577 16 Si 0.792 3.208 17 H -0.184 1.184 18 H -0.203 1.203 19 H -0.202 1.202 20 C -0.074 4.074 21 H 0.089 0.911 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.038 0.962 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.072 0.928 39 H 0.039 0.961 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.888 15.770 11.700 19.656 hybrid contribution -0.220 -1.874 -0.902 2.092 sum -1.109 13.896 10.797 17.633 Atomic orbital electron populations 1.21784 0.94219 1.01670 1.02535 1.21149 0.95732 0.99904 0.93591 0.90223 1.21662 0.95539 1.00159 0.98043 1.21568 0.95915 1.01477 0.95933 1.22194 1.00052 0.94890 0.91044 1.62291 1.08288 1.52978 1.02314 1.22191 1.00090 0.92167 0.92134 1.22125 1.00126 0.98063 0.97662 1.21366 0.99522 0.96018 0.96338 1.19029 0.94444 0.92862 0.95067 1.21770 1.28731 1.00097 1.07630 0.92049 1.26046 0.95315 0.97624 1.01055 1.70118 1.36367 1.11129 1.40046 0.85353 0.78353 0.78349 0.78729 1.18414 1.20255 1.20246 1.22220 0.87383 0.98542 0.99280 0.91102 0.92313 0.93506 0.93262 0.90208 0.90474 0.90767 0.90550 0.96201 0.90275 0.90198 0.93501 0.93303 0.92867 0.92889 0.99624 0.99620 0.92751 0.96123 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.20 71.98 0.66 -1.83 16 2 C -0.08 -1.68 2.88 -10.74 -0.03 -1.71 16 3 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 4 C -0.12 -2.18 5.29 30.67 0.16 -2.01 16 5 C -0.11 -2.13 6.09 30.65 0.19 -1.94 16 6 C 0.05 1.12 5.05 86.33 0.44 1.56 16 7 N -0.54 -13.96 4.86 -896.35 -4.35 -18.31 16 8 C 0.06 1.77 5.36 86.30 0.46 2.23 16 9 C -0.14 -4.99 4.52 30.59 0.14 -4.85 16 10 C -0.09 -4.01 5.15 30.60 0.16 -3.85 16 11 C 0.02 1.28 4.97 29.85 0.15 1.43 16 12 C -0.54 -32.04 9.11 25.60 0.23 -31.81 16 13 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.94 -58.57 13.29 21.45 0.28 -58.29 16 16 Si 0.97 45.08 29.54 68.60 2.03 47.11 16 17 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 C 0.05 1.35 4.12 86.33 0.36 1.70 16 21 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 24 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 25 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.77 8.06 -2.39 -0.02 1.76 16 29 H 0.02 0.56 6.75 -2.39 -0.02 0.54 16 30 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.08 2.17 8.06 -2.39 -0.02 2.15 16 32 H 0.05 1.73 6.68 -2.39 -0.02 1.72 16 33 H 0.05 1.80 6.50 -2.39 -0.02 1.79 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 39 H 0.02 0.60 6.61 -2.38 -0.02 0.58 16 40 H 0.07 1.78 8.12 -2.39 -0.02 1.76 16 Total: -1.00 -64.91 308.89 2.28 -62.62 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: 0.95 Total: 7.68 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 3.37 Total: -40.81 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -4.07 Total: -76.60 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.91 2.28 -62.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385836312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.271 kcal (2) G-P(sol) polarization free energy of solvation -64.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds