Wall clock time and date at job start Mon Mar 30 2020 03:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.33479 * 2 1 4 4 C 1.55374 * 110.34702 * 237.66531 * 2 1 3 5 5 H 1.08998 * 111.01328 * 322.09913 * 4 2 1 6 6 C 1.52999 * 111.17523 * 86.06473 * 4 2 1 7 7 C 1.55147 * 101.44023 * 204.11446 * 4 2 1 8 8 C 1.54317 * 103.17128 * 35.64580 * 7 4 2 9 9 N 1.47436 * 107.23697 * 337.62980 * 8 7 4 10 10 C 1.46901 * 111.00023 * 236.74308 * 9 8 7 11 11 C 1.53007 * 109.47215 * 176.50444 * 10 9 8 12 12 C 1.53001 * 109.47049 * 174.31268 * 11 10 9 13 13 C 1.52998 * 109.46715 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46627 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00328 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99446 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00159 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99703 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46804 * 60.00100 * 18 16 14 20 20 H 1.48496 * 109.47222 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47079 * 300.00292 * 18 16 14 22 22 H 1.09007 * 109.46783 * 299.20435 * 1 2 3 23 23 H 1.09004 * 109.46964 * 59.19509 * 1 2 3 24 24 H 1.08996 * 109.47390 * 179.19545 * 1 2 3 25 25 H 1.08996 * 109.47853 * 173.56648 * 6 4 2 26 26 H 1.09006 * 109.47081 * 293.56401 * 6 4 2 27 27 H 1.09003 * 109.47557 * 53.55862 * 6 4 2 28 28 H 1.08999 * 110.70432 * 277.18016 * 7 4 2 29 29 H 1.09003 * 110.70390 * 154.11382 * 7 4 2 30 30 H 1.09003 * 109.88772 * 97.03536 * 8 7 4 31 31 H 1.09000 * 109.88758 * 218.06113 * 8 7 4 32 32 H 1.08997 * 109.46976 * 296.49708 * 10 9 8 33 33 H 1.08994 * 109.47311 * 56.50344 * 10 9 8 34 34 H 1.08998 * 109.46459 * 294.30915 * 11 10 9 35 35 H 1.08996 * 109.47236 * 54.31058 * 11 10 9 36 36 H 1.09001 * 109.46875 * 299.99606 * 12 11 10 37 37 H 1.08996 * 109.47272 * 59.99813 * 12 11 10 38 38 H 1.09001 * 109.47351 * 299.99588 * 13 12 11 39 39 H 1.08996 * 109.47180 * 60.00029 * 13 12 11 40 40 H 0.97007 * 119.99333 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0703 -0.7792 -1.2309 5 1 1.4534 -1.6526 -1.4421 6 6 2.1706 0.1281 -2.4588 7 6 3.4786 -1.2003 -0.7346 8 6 3.2535 -1.4799 0.7662 9 7 2.0447 -0.7397 1.1720 10 6 2.3358 0.1740 2.2849 11 6 1.0826 0.9855 2.6197 12 6 1.3419 1.8331 3.8667 13 6 0.0889 2.6450 4.2011 14 6 0.3442 3.4794 5.4298 15 1 1.3038 3.4348 5.9231 16 6 -0.6476 4.2998 5.9241 17 7 -1.8164 4.3538 5.3237 18 14 -0.3310 5.3347 7.4467 19 1 0.8037 6.2577 7.1907 20 1 -1.5472 6.1226 7.7714 21 1 0.0018 4.4459 8.5889 22 1 -0.3633 0.5015 0.8971 23 1 -0.3633 0.5263 -0.8827 24 1 -0.3634 -1.0275 -0.0144 25 1 2.6570 -0.4121 -3.2710 26 1 1.1705 0.4295 -2.7706 27 1 2.7557 1.0134 -2.2096 28 1 4.1941 -0.3897 -0.8725 29 1 3.8148 -2.1010 -1.2483 30 1 3.1055 -2.5479 0.9263 31 1 4.1130 -1.1347 1.3407 32 1 2.6392 -0.4027 3.1586 33 1 3.1409 0.8506 1.9985 34 1 0.8376 1.6378 1.7815 35 1 0.2502 0.3074 2.8078 36 1 1.5870 1.1807 4.7049 37 1 2.1743 2.5111 3.6786 38 1 -0.1557 3.2974 3.3628 39 1 -0.7437 1.9672 4.3891 40 1 -2.5140 4.9313 5.6713 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385877233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:28 Heat of formation + Delta-G solvation = -29.997522 kcal Electronic energy + Delta-G solvation = -15805.312748 eV Core-core repulsion = 13425.587324 eV Total energy + Delta-G solvation = -2379.725424 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.51015 -35.16919 -33.27026 -32.03189 -31.13693 -28.81058 -27.05668 -24.38005 -24.14729 -21.55459 -20.73172 -19.87585 -19.74361 -16.23436 -15.79272 -15.33626 -15.04798 -14.40581 -14.05406 -13.73424 -13.40118 -13.10241 -12.55631 -12.45667 -12.29024 -12.07780 -11.69493 -11.58922 -11.21507 -11.06093 -11.01058 -10.91449 -10.67666 -10.52846 -10.45306 -10.41580 -10.02257 -9.58123 -9.21317 -8.96962 -8.29551 -8.17633 -5.94770 -3.96877 3.36171 3.40247 3.42929 4.03066 4.49266 4.49963 4.58085 4.82102 5.15995 5.31704 5.37729 5.40468 5.43662 5.48484 5.52731 5.57895 5.63920 5.72994 5.81963 5.89094 5.96251 5.97362 6.04059 6.14183 6.19481 6.29617 6.33869 6.45160 6.65011 6.87058 7.01505 7.12898 7.19926 7.34060 7.74115 7.90727 8.06431 8.49484 9.10363 9.66729 11.16544 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050629 B = 0.004589 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.906432 B = 6100.052275 C = 6387.276437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.074 3.926 3 H 0.055 0.945 4 C -0.099 4.099 5 H 0.082 0.918 6 C -0.141 4.141 7 C -0.139 4.139 8 C 0.042 3.958 9 N -0.528 5.528 10 C 0.053 3.947 11 C -0.117 4.117 12 C -0.110 4.110 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.053 0.947 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.014 0.986 39 H 0.015 0.985 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.647 -10.557 -13.547 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 H 0.073 0.927 4 C -0.118 4.118 5 H 0.100 0.900 6 C -0.199 4.199 7 C -0.177 4.177 8 C -0.086 4.086 9 N -0.252 5.252 10 C -0.075 4.075 11 C -0.155 4.155 12 C -0.148 4.148 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.071 0.929 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.032 0.968 39 H 0.034 0.966 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.101 -10.820 -13.341 18.992 hybrid contribution 0.776 1.200 0.648 1.570 sum 8.878 -9.620 -12.693 18.234 Atomic orbital electron populations 1.21942 0.93837 1.02160 1.02304 1.22670 0.96316 0.95829 0.88574 0.92688 1.22430 0.96074 0.98692 0.94605 0.89962 1.21719 1.01945 0.99239 0.96977 1.22850 0.97229 1.01393 0.96243 1.22767 0.91891 0.99517 0.94435 1.63589 1.28070 1.26639 1.06936 1.22403 0.97806 0.93828 0.93463 1.21839 0.96637 0.97934 0.99102 1.21614 1.00716 0.97583 0.94889 1.19079 0.91908 0.94333 0.96189 1.21260 0.98840 1.24250 1.11522 0.92853 1.25026 0.95189 0.97072 0.97182 1.69963 1.03932 1.39284 1.40400 0.86677 0.77479 0.80403 0.83545 1.20305 1.21299 1.20265 0.90944 0.92888 0.92400 0.92668 0.92306 0.92712 0.91661 0.91133 0.90853 0.92925 0.91005 0.95350 0.92383 0.91500 0.93464 0.93781 0.96788 0.96625 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.17 37.16 0.34 -1.55 16 2 C 0.07 0.95 1.90 -65.93 -0.12 0.83 16 3 H 0.06 0.77 7.28 -51.93 -0.38 0.39 16 4 C -0.10 -1.03 3.07 -88.22 -0.27 -1.30 16 5 H 0.08 0.85 8.06 -51.93 -0.42 0.44 16 6 C -0.14 -1.27 9.31 37.16 0.35 -0.92 16 7 C -0.14 -1.36 6.40 -24.91 -0.16 -1.52 16 8 C 0.04 0.48 6.89 -2.84 -0.02 0.46 16 9 N -0.53 -7.31 4.94 -223.09 -1.10 -8.41 16 10 C 0.05 0.80 4.58 -3.82 -0.02 0.78 16 11 C -0.12 -2.09 3.72 -26.73 -0.10 -2.19 16 12 C -0.11 -2.34 5.15 -26.73 -0.14 -2.48 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 18 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H 0.07 1.08 5.18 -51.92 -0.27 0.82 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.06 0.63 8.04 -51.93 -0.42 0.22 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.59 7.58 -51.93 -0.39 0.19 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.03 0.43 8.13 -51.93 -0.42 0.00 16 34 H 0.06 1.04 6.07 -51.93 -0.32 0.72 16 35 H 0.07 1.24 7.57 -51.93 -0.39 0.84 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 310.47 15.07 4.68 4.68 Total: -1.00 -30.23 310.47 -9.02 -39.25 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -7.62 Total: -4.43 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -0.69 Total: -21.36 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.37 Total: -35.17 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.23 -9.02 -39.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385877233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.257 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds