Wall clock time and date at job start Mon Mar 30 2020 03:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.33479 * 2 1 4 4 C 1.55374 * 110.34702 * 237.66531 * 2 1 3 5 5 H 1.08998 * 111.01328 * 322.09913 * 4 2 1 6 6 C 1.52999 * 111.17523 * 86.06473 * 4 2 1 7 7 C 1.55147 * 101.44023 * 204.11446 * 4 2 1 8 8 C 1.54317 * 103.17128 * 35.64580 * 7 4 2 9 9 N 1.47436 * 107.23697 * 337.62980 * 8 7 4 10 10 C 1.46901 * 111.00023 * 236.74308 * 9 8 7 11 11 C 1.53007 * 109.47215 * 176.50444 * 10 9 8 12 12 C 1.53001 * 109.47049 * 174.31268 * 11 10 9 13 13 C 1.52998 * 109.46715 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46627 * 179.97438 * 13 12 11 15 15 H 1.07991 * 120.00328 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99446 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00159 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99703 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46804 * 60.00100 * 18 16 14 20 20 H 1.48496 * 109.47222 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47079 * 300.00292 * 18 16 14 22 22 H 1.09007 * 109.46783 * 299.20435 * 1 2 3 23 23 H 1.09004 * 109.46964 * 59.19509 * 1 2 3 24 24 H 1.08996 * 109.47390 * 179.19545 * 1 2 3 25 25 H 1.08996 * 109.47853 * 173.56648 * 6 4 2 26 26 H 1.09006 * 109.47081 * 293.56401 * 6 4 2 27 27 H 1.09003 * 109.47557 * 53.55862 * 6 4 2 28 28 H 1.08999 * 110.70432 * 277.18016 * 7 4 2 29 29 H 1.09003 * 110.70390 * 154.11382 * 7 4 2 30 30 H 1.09003 * 109.88772 * 97.03536 * 8 7 4 31 31 H 1.09000 * 109.88758 * 218.06113 * 8 7 4 32 32 H 1.08997 * 109.46976 * 296.49708 * 10 9 8 33 33 H 1.08994 * 109.47311 * 56.50344 * 10 9 8 34 34 H 1.08998 * 109.46459 * 294.30915 * 11 10 9 35 35 H 1.08996 * 109.47236 * 54.31058 * 11 10 9 36 36 H 1.09001 * 109.46875 * 299.99606 * 12 11 10 37 37 H 1.08996 * 109.47272 * 59.99813 * 12 11 10 38 38 H 1.09001 * 109.47351 * 299.99588 * 13 12 11 39 39 H 1.08996 * 109.47180 * 60.00029 * 13 12 11 40 40 H 0.97007 * 119.99333 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0703 -0.7792 -1.2309 5 1 1.4534 -1.6526 -1.4421 6 6 2.1706 0.1281 -2.4588 7 6 3.4786 -1.2003 -0.7346 8 6 3.2535 -1.4799 0.7662 9 7 2.0447 -0.7397 1.1720 10 6 2.3358 0.1740 2.2849 11 6 1.0826 0.9855 2.6197 12 6 1.3419 1.8331 3.8667 13 6 0.0889 2.6450 4.2011 14 6 0.3442 3.4794 5.4298 15 1 1.3038 3.4348 5.9231 16 6 -0.6476 4.2998 5.9241 17 7 -1.8164 4.3538 5.3237 18 14 -0.3310 5.3347 7.4467 19 1 0.8037 6.2577 7.1907 20 1 -1.5472 6.1226 7.7714 21 1 0.0018 4.4459 8.5889 22 1 -0.3633 0.5015 0.8971 23 1 -0.3633 0.5263 -0.8827 24 1 -0.3634 -1.0275 -0.0144 25 1 2.6570 -0.4121 -3.2710 26 1 1.1705 0.4295 -2.7706 27 1 2.7557 1.0134 -2.2096 28 1 4.1941 -0.3897 -0.8725 29 1 3.8148 -2.1010 -1.2483 30 1 3.1055 -2.5479 0.9263 31 1 4.1130 -1.1347 1.3407 32 1 2.6392 -0.4027 3.1586 33 1 3.1409 0.8506 1.9985 34 1 0.8376 1.6378 1.7815 35 1 0.2502 0.3074 2.8078 36 1 1.5870 1.1807 4.7049 37 1 2.1743 2.5111 3.6786 38 1 -0.1557 3.2974 3.3628 39 1 -0.7437 1.9672 4.3891 40 1 -2.5140 4.9313 5.6713 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385877233.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:27 Heat of formation + Delta-G solvation = -47.492017 kcal Electronic energy + Delta-G solvation = -15806.071366 eV Core-core repulsion = 13425.587324 eV Total energy + Delta-G solvation = -2380.484042 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50802 -36.76312 -34.96768 -33.48715 -32.32898 -30.24084 -28.38517 -26.08466 -25.12750 -23.16830 -21.93251 -21.26282 -20.80116 -18.43486 -16.84625 -16.56442 -16.45313 -16.25999 -15.05755 -14.87055 -14.63156 -14.34361 -14.03155 -13.80762 -13.60022 -13.24935 -13.20588 -12.92285 -12.67943 -12.52507 -12.40133 -12.22301 -12.04569 -11.89699 -11.73421 -11.50247 -11.38229 -11.31499 -11.11410 -10.96471 -10.55239 -9.23995 -8.19847 -6.31673 1.39210 1.42848 1.50834 2.40897 2.99551 3.12696 3.63159 3.69630 3.96541 4.09092 4.22264 4.28812 4.42050 4.51424 4.55554 4.58142 4.63221 4.74651 4.78883 4.82496 4.84564 4.92999 4.94085 5.07279 5.13128 5.17946 5.22317 5.26650 5.30493 5.32879 5.45488 5.49087 5.54261 5.76316 5.85747 6.13569 6.19510 6.25639 6.85259 7.37620 8.91885 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050629 B = 0.004589 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.906432 B = 6100.052275 C = 6387.276437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.069 3.931 3 H 0.042 0.958 4 C -0.093 4.093 5 H 0.085 0.915 6 C -0.138 4.138 7 C -0.132 4.132 8 C 0.038 3.962 9 N -0.541 5.541 10 C 0.063 3.937 11 C -0.104 4.104 12 C -0.098 4.098 13 C 0.025 3.975 14 C -0.547 4.547 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.967 3.033 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.266 1.266 22 H 0.045 0.955 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.071 0.929 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.048 0.952 38 H -0.012 1.012 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.172 -11.018 -13.813 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 H 0.060 0.940 4 C -0.112 4.112 5 H 0.104 0.896 6 C -0.196 4.196 7 C -0.171 4.171 8 C -0.090 4.090 9 N -0.265 5.265 10 C -0.065 4.065 11 C -0.141 4.141 12 C -0.136 4.136 13 C -0.012 4.012 14 C -0.585 4.585 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.574 5.574 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.191 1.191 22 H 0.064 0.936 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.643 -11.295 -13.616 20.149 hybrid contribution 0.256 1.324 0.703 1.520 sum 9.899 -9.972 -12.914 19.083 Atomic orbital electron populations 1.21902 0.94391 1.02091 1.01597 1.22720 0.95919 0.95560 0.89683 0.94002 1.22407 0.96351 0.98587 0.93898 0.89646 1.21705 1.02157 0.98967 0.96779 1.22836 0.96779 1.02405 0.95037 1.22861 0.90910 0.99478 0.95712 1.63559 1.29591 1.26346 1.07012 1.22204 0.96015 0.93866 0.94457 1.21638 0.97838 0.97451 0.97200 1.21426 0.98034 0.97463 0.96652 1.18994 0.93508 0.93870 0.94829 1.21710 0.99336 1.24967 1.12465 0.92217 1.26018 0.94767 0.98368 1.00748 1.70105 1.04970 1.40124 1.42228 0.85484 0.77740 0.78604 0.79119 1.19105 1.20699 1.19121 0.93571 0.91618 0.92130 0.90975 0.92266 0.93163 0.91445 0.89074 0.90108 0.92583 0.90647 0.94963 0.92880 0.92620 0.93044 0.93290 0.99333 0.99307 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.17 71.98 0.66 -3.05 16 2 C 0.07 1.73 1.90 45.55 0.09 1.81 16 3 H 0.04 1.15 7.28 -2.39 -0.02 1.14 16 4 C -0.09 -1.75 3.07 -9.24 -0.03 -1.78 16 5 H 0.09 1.57 8.06 -2.39 -0.02 1.55 16 6 C -0.14 -2.20 9.31 71.98 0.67 -1.53 16 7 C -0.13 -2.25 6.40 31.78 0.20 -2.04 16 8 C 0.04 0.79 6.89 86.65 0.60 1.38 16 9 N -0.54 -14.40 4.94 -859.71 -4.25 -18.65 16 10 C 0.06 1.86 4.58 86.31 0.40 2.26 16 11 C -0.10 -3.76 3.72 30.60 0.11 -3.64 16 12 C -0.10 -4.21 5.15 30.59 0.16 -4.05 16 13 C 0.03 1.39 4.97 29.85 0.15 1.54 16 14 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 17 N -0.93 -58.37 13.29 21.45 0.28 -58.09 16 18 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H 0.05 1.43 5.18 -2.38 -0.01 1.42 16 23 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 24 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.05 0.84 8.11 -2.39 -0.02 0.82 16 28 H 0.07 1.13 8.04 -2.39 -0.02 1.11 16 29 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.13 7.58 -2.39 -0.02 1.11 16 32 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.03 0.93 8.13 -2.39 -0.02 0.91 16 34 H 0.05 1.96 6.07 -2.39 -0.01 1.95 16 35 H 0.06 2.13 7.57 -2.39 -0.02 2.11 16 36 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.70 16 40 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -64.99 310.47 2.72 -62.27 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.96 Total: 8.06 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 3.70 Total: -40.76 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -3.97 Total: -76.74 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.99 2.72 -62.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385877233.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.783 kcal (2) G-P(sol) polarization free energy of solvation -64.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds