Wall clock time and date at job start Mon Mar 30 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47100 * 2 1 4 4 C 1.52996 * 109.47506 * 119.99854 * 2 1 3 5 5 C 1.53001 * 109.47176 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47365 * 299.99973 * 5 4 2 7 7 C 1.52996 * 109.46951 * 59.99890 * 6 5 4 8 8 H 1.09000 * 109.47145 * 60.00120 * 7 6 5 9 9 C 1.53006 * 109.47102 * 180.02562 * 7 6 5 10 10 N 1.46902 * 109.46626 * 294.99959 * 9 7 6 11 11 C 1.46902 * 110.99994 * 293.95302 * 10 9 7 12 12 C 1.46901 * 110.99644 * 170.00094 * 10 9 7 13 13 C 1.50700 * 109.47327 * 190.00050 * 12 10 9 14 14 H 1.07999 * 119.99598 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00184 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47566 * 60.00321 * 17 15 13 19 19 H 1.48501 * 109.47019 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47442 * 300.00135 * 17 15 13 21 21 C 1.52997 * 109.47350 * 299.99902 * 7 6 5 22 22 H 1.09002 * 109.47069 * 299.99922 * 1 2 3 23 23 H 1.08994 * 109.46960 * 60.00123 * 1 2 3 24 24 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47145 * 60.00290 * 4 2 1 26 26 H 1.09002 * 109.47139 * 300.00180 * 4 2 1 27 27 H 1.09007 * 109.46967 * 180.02562 * 5 4 2 28 28 H 1.08993 * 109.47190 * 60.00310 * 5 4 2 29 29 H 1.09006 * 109.47002 * 300.00435 * 6 5 4 30 30 H 1.08997 * 109.47293 * 180.02562 * 6 5 4 31 31 H 1.08993 * 109.46955 * 55.00306 * 9 7 6 32 32 H 1.09000 * 109.47050 * 175.00134 * 9 7 6 33 33 H 1.08992 * 109.47140 * 60.00797 * 11 10 9 34 34 H 1.09002 * 109.46408 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47025 * 299.99832 * 11 10 9 36 36 H 1.09000 * 109.47307 * 309.99860 * 12 10 9 37 37 H 1.09000 * 109.47103 * 69.99758 * 12 10 9 38 38 H 0.96998 * 119.99936 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.47394 * 179.97438 * 21 7 6 40 40 H 1.08990 * 109.47621 * 300.00357 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7206 1.2494 6 6 4.0806 -1.4414 0.0002 7 6 3.5706 -0.7203 -1.2489 8 1 3.9335 0.3075 -1.2488 9 6 4.0806 -1.4415 -2.4982 10 7 5.5446 -1.3377 -2.5601 11 6 5.9655 0.0549 -2.7642 12 6 6.0905 -2.2115 -3.6072 13 6 7.5912 -2.2686 -3.4820 14 1 8.0896 -1.7111 -2.7028 15 6 8.3279 -3.0325 -4.3622 16 7 7.7211 -3.7109 -5.3114 17 14 10.1881 -3.1026 -4.2073 18 1 10.5539 -3.6407 -2.8724 19 1 10.7400 -3.9860 -5.2658 20 1 10.7496 -1.7364 -4.3611 21 6 2.0406 -0.7209 -1.2493 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6768 -1.7489 1.2492 26 1 1.6768 -0.2074 2.1392 27 1 3.9335 -1.2348 2.1393 28 1 3.9330 0.3072 1.2497 29 1 3.7176 -2.4693 0.0000 30 1 5.1706 -1.4414 0.0007 31 1 3.7923 -2.4917 -2.4546 32 1 3.6459 -0.9820 -3.3860 33 1 5.6064 0.6678 -1.9376 34 1 7.0536 0.1029 -2.8066 35 1 5.5489 0.4268 -3.7002 36 1 5.6782 -3.2143 -3.4951 37 1 5.8224 -1.8159 -4.5868 38 1 8.2394 -4.2480 -5.9308 39 1 1.6772 -0.2067 -2.1390 40 1 1.6776 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388749583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:02 Heat of formation + Delta-G solvation = -34.811510 kcal Electronic energy + Delta-G solvation = -16105.618234 eV Core-core repulsion = 13725.684060 eV Total energy + Delta-G solvation = -2379.934174 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.96646 -36.26851 -32.92140 -32.09766 -31.01142 -27.18681 -26.34157 -26.08461 -23.73276 -21.75640 -20.91535 -19.64315 -19.31980 -16.28723 -15.17652 -14.98853 -14.48030 -14.42108 -14.12876 -13.81433 -13.33595 -13.12798 -12.83868 -12.29245 -11.92237 -11.72312 -11.60272 -11.47801 -11.21356 -11.05921 -10.83528 -10.77826 -10.65512 -10.52003 -10.47162 -10.07606 -9.90994 -9.75686 -9.59556 -9.10454 -8.39615 -7.13812 -5.98863 -3.99982 3.35720 3.39470 3.42619 4.45155 4.73063 4.78937 4.90268 5.17139 5.26628 5.35774 5.37831 5.56280 5.57033 5.65201 5.71397 5.77911 5.80112 5.90187 5.99586 6.07631 6.13288 6.14936 6.19488 6.32167 6.39240 6.40783 6.42674 6.48580 6.60499 6.78398 6.84962 6.88223 7.36128 7.41233 7.84955 8.15343 8.27851 8.62220 9.07748 9.63986 11.12106 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.052252 B = 0.005288 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.736722 B = 5293.317787 C = 5496.320026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.081 4.081 8 H 0.066 0.934 9 C 0.060 3.940 10 N -0.538 5.538 11 C 0.037 3.963 12 C 0.192 3.808 13 C -0.506 4.506 14 H 0.062 0.938 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.109 4.109 22 H 0.050 0.950 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.018 0.982 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.008 0.992 36 H 0.028 0.972 37 H -0.011 1.011 38 H 0.261 0.739 39 H 0.056 0.944 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.688 6.877 10.269 17.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.142 4.142 7 C -0.100 4.100 8 H 0.085 0.915 9 C -0.069 4.069 10 N -0.262 5.262 11 C -0.112 4.112 12 C 0.067 3.933 13 C -0.544 4.544 14 H 0.081 0.919 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.147 4.147 22 H 0.069 0.931 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.046 0.954 37 H 0.006 0.994 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.455 6.582 10.555 16.910 hybrid contribution 0.653 0.133 -0.897 1.118 sum -10.802 6.715 9.658 15.971 Atomic orbital electron populations 1.21835 0.95758 1.01593 1.01203 1.21117 0.94837 0.99579 0.95402 0.91571 1.21591 0.96143 1.00352 0.96915 1.21571 0.95005 1.00680 0.98512 1.21448 1.01943 0.98325 0.92484 1.21164 0.93635 0.99791 0.95437 0.91543 1.22094 0.89967 0.99784 0.95064 1.62077 1.06690 1.07306 1.50127 1.22235 1.01838 0.89836 0.97295 1.19715 0.95177 0.91491 0.86891 1.21143 0.91274 1.28081 1.13951 0.91943 1.24989 0.98748 0.95607 0.95309 1.69951 1.35689 1.30636 1.17715 0.86569 0.85324 0.77877 0.77668 1.20170 1.21394 1.20323 1.21629 0.95818 1.00408 0.96804 0.93090 0.92913 0.92823 0.92209 0.92766 0.92506 0.92468 0.92641 0.90333 0.91685 0.96344 0.93553 0.90956 0.97387 0.95370 0.99360 0.92932 0.92506 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.20 37.16 0.34 -1.03 16 2 C -0.09 -0.99 2.72 -90.62 -0.25 -1.23 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.11 -1.21 5.20 -26.73 -0.14 -1.35 16 5 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 6 C -0.10 -1.54 5.09 -26.74 -0.14 -1.67 16 7 C -0.08 -1.21 2.11 -90.62 -0.19 -1.41 16 8 H 0.07 1.01 6.34 -51.93 -0.33 0.68 16 9 C 0.06 1.10 4.35 -3.82 -0.02 1.09 16 10 N -0.54 -11.82 4.21 -244.37 -1.03 -12.85 16 11 C 0.04 0.73 9.15 60.07 0.55 1.28 16 12 C 0.19 5.14 4.72 -4.98 -0.02 5.12 16 13 C -0.51 -14.45 8.46 -34.44 -0.29 -14.74 16 14 H 0.06 1.76 7.12 -52.49 -0.37 1.38 16 15 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 17 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.11 -1.37 4.48 -26.73 -0.12 -1.49 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.33 7.75 -51.93 -0.40 0.93 16 31 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 32 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 33 H 0.05 0.80 6.37 -51.93 -0.33 0.47 16 34 H 0.07 1.55 6.76 -51.93 -0.35 1.20 16 35 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 37 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -29.32 307.67 -8.87 -38.19 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -7.66 Total: -4.85 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -0.53 Total: -15.57 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: -0.29 Total: -39.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.32 -8.87 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388749583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.375 kcal (2) G-P(sol) polarization free energy of solvation -29.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds