Wall clock time and date at job start Mon Mar 30 2020 03:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.47100 * 2 1 4 4 C 1.52996 * 109.47506 * 119.99854 * 2 1 3 5 5 C 1.53001 * 109.47176 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47365 * 299.99973 * 5 4 2 7 7 C 1.52996 * 109.46951 * 59.99890 * 6 5 4 8 8 H 1.09000 * 109.47145 * 60.00120 * 7 6 5 9 9 C 1.53006 * 109.47102 * 180.02562 * 7 6 5 10 10 N 1.46902 * 109.46626 * 294.99959 * 9 7 6 11 11 C 1.46902 * 110.99994 * 293.95302 * 10 9 7 12 12 C 1.46901 * 110.99644 * 170.00094 * 10 9 7 13 13 C 1.50700 * 109.47327 * 190.00050 * 12 10 9 14 14 H 1.07999 * 119.99598 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00184 * 179.97438 * 13 12 10 16 16 N 1.31509 * 120.00072 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99743 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47566 * 60.00321 * 17 15 13 19 19 H 1.48501 * 109.47019 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47442 * 300.00135 * 17 15 13 21 21 C 1.52997 * 109.47350 * 299.99902 * 7 6 5 22 22 H 1.09002 * 109.47069 * 299.99922 * 1 2 3 23 23 H 1.08994 * 109.46960 * 60.00123 * 1 2 3 24 24 H 1.09000 * 109.46682 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47145 * 60.00290 * 4 2 1 26 26 H 1.09002 * 109.47139 * 300.00180 * 4 2 1 27 27 H 1.09007 * 109.46967 * 180.02562 * 5 4 2 28 28 H 1.08993 * 109.47190 * 60.00310 * 5 4 2 29 29 H 1.09006 * 109.47002 * 300.00435 * 6 5 4 30 30 H 1.08997 * 109.47293 * 180.02562 * 6 5 4 31 31 H 1.08993 * 109.46955 * 55.00306 * 9 7 6 32 32 H 1.09000 * 109.47050 * 175.00134 * 9 7 6 33 33 H 1.08992 * 109.47140 * 60.00797 * 11 10 9 34 34 H 1.09002 * 109.46408 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47025 * 299.99832 * 11 10 9 36 36 H 1.09000 * 109.47307 * 309.99860 * 12 10 9 37 37 H 1.09000 * 109.47103 * 69.99758 * 12 10 9 38 38 H 0.96998 * 119.99936 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.47394 * 179.97438 * 21 7 6 40 40 H 1.08990 * 109.47621 * 300.00357 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5701 -0.7206 1.2494 6 6 4.0806 -1.4414 0.0002 7 6 3.5706 -0.7203 -1.2489 8 1 3.9335 0.3075 -1.2488 9 6 4.0806 -1.4415 -2.4982 10 7 5.5446 -1.3377 -2.5601 11 6 5.9655 0.0549 -2.7642 12 6 6.0905 -2.2115 -3.6072 13 6 7.5912 -2.2686 -3.4820 14 1 8.0896 -1.7111 -2.7028 15 6 8.3279 -3.0325 -4.3622 16 7 7.7211 -3.7109 -5.3114 17 14 10.1881 -3.1026 -4.2073 18 1 10.5539 -3.6407 -2.8724 19 1 10.7400 -3.9860 -5.2658 20 1 10.7496 -1.7364 -4.3611 21 6 2.0406 -0.7209 -1.2493 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6768 -1.7489 1.2492 26 1 1.6768 -0.2074 2.1392 27 1 3.9335 -1.2348 2.1393 28 1 3.9330 0.3072 1.2497 29 1 3.7176 -2.4693 0.0000 30 1 5.1706 -1.4414 0.0007 31 1 3.7923 -2.4917 -2.4546 32 1 3.6459 -0.9820 -3.3860 33 1 5.6064 0.6678 -1.9376 34 1 7.0536 0.1029 -2.8066 35 1 5.5489 0.4268 -3.7002 36 1 5.6782 -3.2143 -3.4951 37 1 5.8224 -1.8159 -4.5868 38 1 8.2394 -4.2480 -5.9308 39 1 1.6772 -0.2067 -2.1390 40 1 1.6776 -1.7486 -1.2494 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388749583.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:02 Heat of formation + Delta-G solvation = -51.184863 kcal Electronic energy + Delta-G solvation = -16106.328236 eV Core-core repulsion = 13725.684060 eV Total energy + Delta-G solvation = -2380.644176 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.13176 -37.87656 -34.84122 -33.38032 -32.23243 -29.21424 -27.78697 -27.11252 -25.52121 -22.84570 -22.56325 -20.81620 -20.55472 -18.49160 -16.85164 -16.15605 -16.11555 -16.00215 -15.28120 -15.02338 -14.88722 -14.36361 -14.18802 -13.83635 -13.27431 -13.15254 -12.99635 -12.72804 -12.66423 -12.57459 -12.51795 -12.29858 -12.11283 -11.96397 -11.76312 -11.48425 -11.40451 -11.17072 -10.79644 -10.73425 -10.61204 -8.97994 -8.20571 -6.31222 1.40720 1.44403 1.52322 2.40334 3.11571 3.33312 3.76553 3.89052 3.98847 4.17705 4.36921 4.45610 4.49774 4.57164 4.59169 4.67234 4.75859 4.78356 4.85225 4.86952 4.94356 4.99604 5.07281 5.09910 5.16188 5.18704 5.27031 5.30176 5.36431 5.46171 5.47508 5.54467 5.61933 5.66396 5.71650 6.05255 6.34829 6.65750 6.85203 7.38676 8.90592 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.052252 B = 0.005288 C = 0.005093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.736722 B = 5293.317787 C = 5496.320026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.103 4.103 7 C -0.071 4.071 8 H 0.069 0.931 9 C 0.060 3.940 10 N -0.543 5.543 11 C 0.041 3.959 12 C 0.207 3.793 13 C -0.524 4.524 14 H 0.064 0.936 15 C 0.000 4.000 16 N -0.937 5.937 17 Si 0.971 3.029 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.266 1.266 21 C -0.105 4.105 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.016 0.984 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.006 0.994 36 H 0.000 1.000 37 H -0.042 1.042 38 H 0.264 0.736 39 H 0.059 0.941 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 8.052 11.830 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.140 4.140 7 C -0.090 4.090 8 H 0.087 0.913 9 C -0.069 4.069 10 N -0.266 5.266 11 C -0.107 4.107 12 C 0.081 3.919 13 C -0.562 4.562 14 H 0.082 0.918 15 C -0.197 4.197 16 N -0.577 5.577 17 Si 0.796 3.204 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.143 4.143 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.034 0.966 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.025 0.975 36 H 0.018 0.982 37 H -0.024 1.024 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.693 7.774 12.134 18.557 hybrid contribution 0.672 -0.240 -1.396 1.568 sum -11.021 7.534 10.737 17.132 Atomic orbital electron populations 1.21802 0.94339 1.01906 1.02047 1.21098 0.95989 0.99325 0.94205 0.91243 1.21583 0.94870 1.00610 0.97661 1.21524 0.96122 1.00501 0.97079 1.21392 1.00259 0.98412 0.93963 1.21086 0.95415 0.99083 0.93405 0.91260 1.22194 0.87820 0.99768 0.97085 1.62016 1.08894 1.07872 1.47858 1.22229 1.00911 0.88972 0.98628 1.19379 0.94900 0.90902 0.86765 1.21449 0.92224 1.28371 1.14195 0.91786 1.25948 1.04208 0.94903 0.94687 1.70088 1.37834 1.31270 1.18522 0.85408 0.78668 0.78393 0.77976 1.19262 1.20799 1.19136 1.21598 0.93679 1.00746 0.98255 0.91743 0.92636 0.92803 0.92329 0.90866 0.91755 0.91995 0.93453 0.92984 0.92892 0.96575 0.90168 0.92535 0.97544 0.98212 1.02438 0.92679 0.92220 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.20 71.98 0.66 -1.60 16 2 C -0.09 -1.67 2.72 -10.79 -0.03 -1.70 16 3 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 4 C -0.11 -2.06 5.20 30.59 0.16 -1.90 16 5 C -0.11 -2.53 5.92 30.59 0.18 -2.35 16 6 C -0.10 -2.95 5.09 30.59 0.16 -2.80 16 7 C -0.07 -2.06 2.11 -10.79 -0.02 -2.08 16 8 H 0.07 1.98 6.34 -2.39 -0.02 1.96 16 9 C 0.06 2.24 4.35 86.31 0.38 2.62 16 10 N -0.54 -24.37 4.21 -927.04 -3.90 -28.27 16 11 C 0.04 1.63 9.15 127.69 1.17 2.80 16 12 C 0.21 11.53 4.72 85.56 0.40 11.93 16 13 C -0.52 -30.55 8.46 25.60 0.22 -30.33 16 14 H 0.06 3.63 7.12 -2.91 -0.02 3.61 16 15 C 0.00 0.02 5.46 84.66 0.46 0.48 16 16 N -0.94 -57.71 13.29 21.45 0.28 -57.43 16 17 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 18 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 21 C -0.10 -2.47 4.48 30.60 0.14 -2.33 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.05 1.41 8.14 -2.38 -0.02 1.40 16 30 H 0.05 1.76 7.75 -2.39 -0.02 1.75 16 31 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 32 H 0.02 0.61 8.12 -2.39 -0.02 0.59 16 33 H 0.08 2.64 6.37 -2.39 -0.02 2.62 16 34 H 0.06 2.42 6.76 -2.39 -0.02 2.40 16 35 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.00 -0.01 7.93 -2.39 -0.02 -0.03 16 37 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -63.66 307.67 3.23 -60.43 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: 0.95 Total: 5.54 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: 3.87 Total: -27.27 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -3.62 Total: -85.69 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -63.66 3.23 -60.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388749583.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.241 kcal (2) G-P(sol) polarization free energy of solvation -63.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds