Wall clock time and date at job start Mon Mar 30 2020 03:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 115.54700 * 2 1 4 4 C 1.53065 * 117.49434 * 214.27159 * 2 1 3 5 5 C 1.52999 * 117.49980 * 145.66605 * 2 1 3 6 6 H 1.08997 * 117.49781 * 359.97438 * 5 2 1 7 7 C 1.53000 * 117.49718 * 214.97691 * 5 2 1 8 8 N 1.46901 * 109.46769 * 175.08825 * 7 5 2 9 9 C 1.46893 * 111.00243 * 293.95721 * 8 7 5 10 10 C 1.46906 * 110.99853 * 170.00087 * 8 7 5 11 11 C 1.53003 * 109.47132 * 190.00109 * 10 8 7 12 12 C 1.53003 * 109.46758 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46758 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47174 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99794 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00138 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00093 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99905 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47360 * 90.00000 * 18 16 14 20 20 H 1.48500 * 109.46817 * 210.00158 * 18 16 14 21 21 H 1.48497 * 109.47108 * 329.99941 * 18 16 14 22 22 H 1.09008 * 109.47159 * 274.33079 * 1 2 3 23 23 H 1.08998 * 109.47536 * 34.33113 * 1 2 3 24 24 H 1.09000 * 109.47249 * 154.33212 * 1 2 3 25 25 H 1.09000 * 117.51459 * 145.03441 * 4 2 1 26 26 H 1.09005 * 117.49885 * 359.97438 * 4 2 1 27 27 H 1.09002 * 109.47398 * 295.09120 * 7 5 2 28 28 H 1.09001 * 109.47194 * 55.09301 * 7 5 2 29 29 H 1.08999 * 109.47439 * 60.00146 * 9 8 7 30 30 H 1.08997 * 109.47257 * 180.02562 * 9 8 7 31 31 H 1.09006 * 109.46808 * 299.99830 * 9 8 7 32 32 H 1.09000 * 109.47257 * 310.00208 * 10 8 7 33 33 H 1.09006 * 109.46871 * 70.00245 * 10 8 7 34 34 H 1.09000 * 109.47130 * 300.00176 * 11 10 8 35 35 H 1.08997 * 109.46978 * 60.00428 * 11 10 8 36 36 H 1.09000 * 109.47340 * 299.99921 * 12 11 10 37 37 H 1.08997 * 109.47131 * 60.00394 * 12 11 10 38 38 H 1.09000 * 109.47130 * 300.00049 * 13 12 11 39 39 H 1.09002 * 109.47311 * 59.99678 * 13 12 11 40 40 H 0.96999 * 120.00020 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2366 -1.1220 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8577 1.2694 7 6 3.5490 -0.7753 1.4717 8 7 4.0109 -1.9375 2.2423 9 6 3.0888 -2.2377 3.3457 10 6 5.3774 -1.7299 2.7399 11 6 5.9148 -3.0411 3.3169 12 6 7.3378 -2.8246 3.8357 13 6 7.8750 -4.1357 4.4132 14 6 9.2768 -3.9227 4.9237 15 1 9.7382 -2.9495 4.8445 16 6 9.9702 -4.9703 5.4917 17 7 11.1934 -4.7843 5.9377 18 14 9.1723 -6.6538 5.6280 19 1 9.4715 -7.4438 4.4067 20 1 9.7086 -7.3608 6.8187 21 1 7.7024 -6.4951 5.7671 22 1 -0.3634 0.0776 1.0248 23 1 -0.3634 0.8486 -0.5795 24 1 -0.3634 -0.9262 -0.4451 25 1 3.1718 -0.8769 -1.2680 26 1 1.6113 -1.8601 -1.2670 27 1 4.3017 -0.5089 0.7297 28 1 3.3887 0.0667 2.1451 29 1 2.0995 -2.4560 2.9434 30 1 3.4546 -3.1020 3.9000 31 1 3.0282 -1.3777 4.0127 32 1 6.0173 -1.4046 1.9197 33 1 5.3686 -0.9670 3.5185 34 1 5.2749 -3.3664 4.1372 35 1 5.9236 -3.8039 2.5384 36 1 7.9779 -2.4991 3.0157 37 1 7.3286 -2.0619 4.6143 38 1 7.2347 -4.4608 5.2333 39 1 7.8841 -4.8988 3.6350 40 1 11.6811 -5.5212 6.3377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395428360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:18 Heat of formation + Delta-G solvation = 1.818808 kcal Electronic energy + Delta-G solvation = -15123.419730 eV Core-core repulsion = 12745.073966 eV Total energy + Delta-G solvation = -2378.345764 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.83657 -36.92634 -34.34759 -32.20081 -29.77377 -28.75167 -27.17355 -25.68454 -23.16156 -21.20106 -20.49230 -20.32564 -19.96762 -16.63779 -15.83345 -15.62968 -15.40267 -14.34749 -14.21688 -14.06265 -13.74314 -13.33551 -12.75891 -12.62506 -12.45000 -12.26024 -11.86357 -11.79812 -11.69031 -11.56340 -11.14886 -11.02407 -10.73145 -10.40373 -10.16087 -9.95858 -9.83927 -9.61728 -9.42289 -9.10967 -8.49182 -8.27355 -5.99998 -3.97415 3.34566 3.41382 3.46218 3.48243 3.95069 4.49714 4.51791 4.63893 4.75070 5.03360 5.16517 5.22432 5.26228 5.34253 5.40632 5.45621 5.49454 5.53747 5.64035 5.64541 5.72627 5.74706 5.85535 5.90941 6.00816 6.09261 6.12054 6.19284 6.44133 6.70697 6.81964 6.95983 7.10405 7.18224 7.38918 7.51823 7.85541 8.59571 9.05401 9.63155 11.13672 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.064721 B = 0.003720 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.520379 B = 7525.572715 C = 7667.150593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.160 4.160 3 H 0.101 0.899 4 C -0.170 4.170 5 C -0.141 4.141 6 H 0.107 0.893 7 C 0.085 3.915 8 N -0.541 5.541 9 C 0.020 3.980 10 C 0.056 3.944 11 C -0.116 4.116 12 C -0.102 4.102 13 C -0.014 4.014 14 C -0.519 4.519 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 H 0.057 0.943 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.031 0.969 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.014 0.986 39 H 0.011 0.989 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.673 8.213 -10.543 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 H 0.119 0.881 4 C -0.207 4.207 5 C -0.159 4.159 6 H 0.125 0.875 7 C -0.043 4.043 8 N -0.265 5.265 9 C -0.128 4.128 10 C -0.071 4.071 11 C -0.154 4.154 12 C -0.140 4.140 13 C -0.051 4.051 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.709 3.291 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.190 1.190 22 H 0.076 0.924 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.112 0.888 26 H 0.110 0.890 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.041 0.959 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.514 7.720 -10.767 24.420 hybrid contribution -0.224 -0.230 0.674 0.747 sum -20.738 7.490 -10.093 24.250 Atomic orbital electron populations 1.21345 0.92954 1.01824 1.01710 1.22421 0.95170 0.94688 1.05582 0.88078 1.23169 1.02352 1.00857 0.94311 1.22406 0.98342 1.01187 0.93961 0.87481 1.21679 0.94826 0.91263 0.96564 1.61973 1.02695 1.37696 1.24093 1.22466 0.96728 1.00750 0.92846 1.22230 0.88226 0.98147 0.98539 1.21708 0.97510 0.96153 1.00057 1.21427 0.93099 0.99898 0.99551 1.19566 0.96698 0.93294 0.95552 1.21198 0.97602 0.98270 1.38650 0.91147 1.25054 0.94692 0.98967 0.94963 1.69925 1.11027 1.32285 1.41331 0.86752 0.80303 0.84453 0.77631 1.20305 1.21483 1.18997 0.92355 0.92295 0.92587 0.88849 0.88992 0.90783 0.94743 0.91700 0.90775 0.95893 0.90970 0.95040 0.92555 0.91681 0.92876 0.93100 0.96796 0.97078 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.19 37.16 0.38 -0.47 16 2 C -0.16 -1.32 6.13 -90.59 -0.56 -1.88 16 3 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 4 C -0.17 -1.50 9.83 -26.70 -0.26 -1.77 16 5 C -0.14 -1.36 5.41 -90.62 -0.49 -1.85 16 6 H 0.11 1.08 6.38 -51.93 -0.33 0.74 16 7 C 0.08 0.93 5.24 -3.82 -0.02 0.91 16 8 N -0.54 -6.98 4.76 -242.91 -1.16 -8.14 16 9 C 0.02 0.24 9.17 60.06 0.55 0.79 16 10 C 0.06 0.79 4.96 -3.82 -0.02 0.78 16 11 C -0.12 -1.94 5.15 -26.73 -0.14 -2.07 16 12 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 13 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 14 C -0.52 -15.24 9.66 -34.44 -0.33 -15.57 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.57 13.96 55.43 0.77 -27.79 16 18 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 23 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 25 H 0.09 0.82 8.03 -51.93 -0.42 0.40 16 26 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 27 H 0.07 0.80 7.67 -51.93 -0.40 0.40 16 28 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.06 0.67 6.33 -51.93 -0.33 0.34 16 30 H 0.07 0.91 6.30 -51.93 -0.33 0.59 16 31 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 33 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.06 0.92 6.47 -51.93 -0.34 0.59 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 316.70 15.07 4.77 4.77 Total: -1.00 -30.82 316.70 -9.05 -39.87 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -7.53 Total: -4.35 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -1.24 Total: -21.97 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.38 Total: -35.93 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.82 -9.05 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395428360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.687 kcal (2) G-P(sol) polarization free energy of solvation -30.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds