Wall clock time and date at job start Mon Mar 30 2020 03:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 115.54700 * 2 1 4 4 C 1.53065 * 117.49434 * 214.27159 * 2 1 3 5 5 C 1.52999 * 117.49980 * 145.66605 * 2 1 3 6 6 H 1.08997 * 117.49781 * 359.97438 * 5 2 1 7 7 C 1.53000 * 117.49718 * 214.97691 * 5 2 1 8 8 N 1.46901 * 109.46769 * 175.08825 * 7 5 2 9 9 C 1.46893 * 111.00243 * 293.95721 * 8 7 5 10 10 C 1.46906 * 110.99853 * 170.00087 * 8 7 5 11 11 C 1.53003 * 109.47132 * 190.00109 * 10 8 7 12 12 C 1.53003 * 109.46758 * 180.02562 * 11 10 8 13 13 C 1.53003 * 109.46758 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47174 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99794 * 0.02562 * 14 13 12 16 16 C 1.37874 * 120.00138 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00093 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99905 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47360 * 90.00000 * 18 16 14 20 20 H 1.48500 * 109.46817 * 210.00158 * 18 16 14 21 21 H 1.48497 * 109.47108 * 329.99941 * 18 16 14 22 22 H 1.09008 * 109.47159 * 274.33079 * 1 2 3 23 23 H 1.08998 * 109.47536 * 34.33113 * 1 2 3 24 24 H 1.09000 * 109.47249 * 154.33212 * 1 2 3 25 25 H 1.09000 * 117.51459 * 145.03441 * 4 2 1 26 26 H 1.09005 * 117.49885 * 359.97438 * 4 2 1 27 27 H 1.09002 * 109.47398 * 295.09120 * 7 5 2 28 28 H 1.09001 * 109.47194 * 55.09301 * 7 5 2 29 29 H 1.08999 * 109.47439 * 60.00146 * 9 8 7 30 30 H 1.08997 * 109.47257 * 180.02562 * 9 8 7 31 31 H 1.09006 * 109.46808 * 299.99830 * 9 8 7 32 32 H 1.09000 * 109.47257 * 310.00208 * 10 8 7 33 33 H 1.09006 * 109.46871 * 70.00245 * 10 8 7 34 34 H 1.09000 * 109.47130 * 300.00176 * 11 10 8 35 35 H 1.08997 * 109.46978 * 60.00428 * 11 10 8 36 36 H 1.09000 * 109.47340 * 299.99921 * 12 11 10 37 37 H 1.08997 * 109.47131 * 60.00394 * 12 11 10 38 38 H 1.09000 * 109.47130 * 300.00049 * 13 12 11 39 39 H 1.09002 * 109.47311 * 59.99678 * 13 12 11 40 40 H 0.96999 * 120.00020 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2366 -1.1220 -0.7646 5 6 2.2364 -1.1207 0.7654 6 1 1.6112 -1.8577 1.2694 7 6 3.5490 -0.7753 1.4717 8 7 4.0109 -1.9375 2.2423 9 6 3.0888 -2.2377 3.3457 10 6 5.3774 -1.7299 2.7399 11 6 5.9148 -3.0411 3.3169 12 6 7.3378 -2.8246 3.8357 13 6 7.8750 -4.1357 4.4132 14 6 9.2768 -3.9227 4.9237 15 1 9.7382 -2.9495 4.8445 16 6 9.9702 -4.9703 5.4917 17 7 11.1934 -4.7843 5.9377 18 14 9.1723 -6.6538 5.6280 19 1 9.4715 -7.4438 4.4067 20 1 9.7086 -7.3608 6.8187 21 1 7.7024 -6.4951 5.7671 22 1 -0.3634 0.0776 1.0248 23 1 -0.3634 0.8486 -0.5795 24 1 -0.3634 -0.9262 -0.4451 25 1 3.1718 -0.8769 -1.2680 26 1 1.6113 -1.8601 -1.2670 27 1 4.3017 -0.5089 0.7297 28 1 3.3887 0.0667 2.1451 29 1 2.0995 -2.4560 2.9434 30 1 3.4546 -3.1020 3.9000 31 1 3.0282 -1.3777 4.0127 32 1 6.0173 -1.4046 1.9197 33 1 5.3686 -0.9670 3.5185 34 1 5.2749 -3.3664 4.1372 35 1 5.9236 -3.8039 2.5384 36 1 7.9779 -2.4991 3.0157 37 1 7.3286 -2.0619 4.6143 38 1 7.2347 -4.4608 5.2333 39 1 7.8841 -4.8988 3.6350 40 1 11.6811 -5.5212 6.3377 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395428360.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:17 Heat of formation + Delta-G solvation = -16.066662 kcal Electronic energy + Delta-G solvation = -15124.195302 eV Core-core repulsion = 12745.073966 eV Total energy + Delta-G solvation = -2379.121336 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.67311 -37.90493 -36.04634 -34.20468 -31.13476 -29.76859 -28.03267 -27.13517 -24.59959 -22.29742 -21.67832 -21.49794 -21.02138 -18.85550 -16.83537 -16.64782 -16.44388 -16.13399 -15.65829 -14.94164 -14.76805 -14.60292 -14.12457 -13.88330 -13.68338 -13.35091 -13.15989 -13.00359 -12.80233 -12.67902 -12.38406 -12.22497 -12.01824 -11.88318 -11.75229 -11.39295 -11.24765 -11.22965 -10.81842 -10.76232 -10.58948 -9.25503 -8.29686 -6.33802 1.36197 1.37893 1.50612 2.36744 2.71957 3.05645 3.08362 3.77326 3.94584 4.02950 4.08425 4.17646 4.36598 4.40336 4.47299 4.53904 4.54445 4.63134 4.70209 4.76846 4.82871 4.87812 4.95607 4.97138 4.99418 5.07774 5.14983 5.18690 5.21194 5.26706 5.34687 5.47333 5.58112 5.64885 5.68651 6.11446 6.16674 6.29581 6.74455 7.31063 8.87354 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.064721 B = 0.003720 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.520379 B = 7525.572715 C = 7667.150593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.151 4.151 3 H 0.104 0.896 4 C -0.173 4.173 5 C -0.150 4.150 6 H 0.105 0.895 7 C 0.086 3.914 8 N -0.550 5.550 9 C 0.020 3.980 10 C 0.062 3.938 11 C -0.104 4.104 12 C -0.095 4.095 13 C -0.012 4.012 14 C -0.535 4.535 15 H 0.030 0.970 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.246 1.246 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.018 0.982 39 H 0.017 0.983 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.039 7.554 -11.271 26.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.170 4.170 3 H 0.122 0.878 4 C -0.209 4.209 5 C -0.168 4.168 6 H 0.123 0.877 7 C -0.041 4.041 8 N -0.274 5.274 9 C -0.128 4.128 10 C -0.065 4.065 11 C -0.142 4.142 12 C -0.133 4.133 13 C -0.049 4.049 14 C -0.573 4.573 15 H 0.048 0.952 16 C -0.196 4.196 17 N -0.595 5.595 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.170 1.170 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -22.899 7.079 -11.507 26.587 hybrid contribution 0.565 0.068 0.891 1.057 sum -22.334 7.147 -10.616 25.741 Atomic orbital electron populations 1.21366 0.91941 1.02409 1.02097 1.22501 0.95940 0.94411 1.04118 0.87760 1.23226 1.02609 1.01381 0.93726 1.22338 0.97934 1.02226 0.94339 0.87734 1.21689 0.95455 0.90604 0.96365 1.61947 1.02160 1.38725 1.24525 1.22492 0.97150 1.00526 0.92617 1.22060 0.89312 0.96609 0.98544 1.21525 0.95045 0.97494 1.00130 1.21297 0.95331 0.97538 0.99133 1.19535 0.93939 0.95672 0.95773 1.21571 0.99993 0.96782 1.38950 0.95196 1.26084 0.95208 1.03865 0.94436 1.70080 1.12878 1.33974 1.42520 0.85595 0.80122 0.78449 0.78107 1.19094 1.20879 1.16972 0.92130 0.91302 0.92390 0.88943 0.88464 0.90873 0.94609 0.90234 0.91450 0.95645 0.90803 0.95026 0.92042 0.91813 0.93388 0.93600 0.96339 0.96451 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 10.19 71.98 0.73 -0.69 16 2 C -0.15 -2.19 6.13 -10.77 -0.07 -2.26 16 3 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 4 C -0.17 -2.74 9.83 30.62 0.30 -2.44 16 5 C -0.15 -2.63 5.41 -10.79 -0.06 -2.69 16 6 H 0.10 1.89 6.38 -2.39 -0.02 1.88 16 7 C 0.09 1.75 5.24 86.30 0.45 2.20 16 8 N -0.55 -13.20 4.76 -922.43 -4.39 -17.59 16 9 C 0.02 0.43 9.17 127.69 1.17 1.60 16 10 C 0.06 1.68 4.96 86.30 0.43 2.11 16 11 C -0.10 -3.30 5.15 30.60 0.16 -3.14 16 12 C -0.09 -3.78 5.15 30.60 0.16 -3.62 16 13 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 14 C -0.53 -31.97 9.66 25.60 0.25 -31.72 16 15 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 16 C 0.00 0.02 5.47 84.65 0.46 0.49 16 17 N -0.95 -61.31 13.96 21.45 0.30 -61.01 16 18 Si 0.95 45.38 27.47 68.60 1.88 47.26 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.25 -10.87 6.54 99.48 0.65 -10.22 16 22 H 0.06 0.69 8.14 -2.38 -0.02 0.68 16 23 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.66 7.90 -2.39 -0.02 0.64 16 25 H 0.09 1.48 8.03 -2.39 -0.02 1.46 16 26 H 0.10 1.43 8.05 -2.38 -0.02 1.41 16 27 H 0.07 1.48 7.67 -2.39 -0.02 1.46 16 28 H 0.04 0.72 8.12 -2.39 -0.02 0.70 16 29 H 0.08 1.46 6.33 -2.39 -0.02 1.44 16 30 H 0.07 1.53 6.30 -2.39 -0.02 1.51 16 31 H 0.02 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.07 1.95 7.93 -2.39 -0.02 1.94 16 33 H 0.03 0.85 8.12 -2.38 -0.02 0.83 16 34 H 0.06 1.89 6.47 -2.39 -0.02 1.87 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 39 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 40 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -65.91 316.70 2.80 -63.11 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: 0.91 Total: 8.84 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 4.11 Total: -40.61 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -4.09 Total: -78.60 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.26 kcal Total: -65.91 2.80 -63.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395428360.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.043 kcal (2) G-P(sol) polarization free energy of solvation -65.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds