Wall clock time and date at job start Mon Mar 30 2020 03:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 115.55273 * 2 1 4 4 C 1.53003 * 117.52084 * 145.70551 * 2 1 3 5 5 C 1.52996 * 60.00285 * 107.47511 * 4 2 1 6 6 H 1.08993 * 117.52350 * 252.52104 * 5 4 2 7 7 C 1.53006 * 117.49518 * 107.48754 * 5 4 2 8 8 N 1.46898 * 109.46682 * 116.38043 * 7 5 4 9 9 C 1.46902 * 111.00283 * 66.04945 * 8 7 5 10 10 C 1.46906 * 110.99888 * 189.99906 * 8 7 5 11 11 C 1.53000 * 109.47072 * 170.00122 * 10 8 7 12 12 C 1.52996 * 109.47188 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47642 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47582 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99841 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00084 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00305 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00096 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47519 * 89.99330 * 18 16 14 20 20 H 1.48500 * 109.47207 * 209.99692 * 18 16 14 21 21 H 1.48502 * 109.46822 * 329.99437 * 18 16 14 22 22 H 1.09003 * 109.47085 * 205.67136 * 1 2 3 23 23 H 1.08998 * 109.46746 * 325.66909 * 1 2 3 24 24 H 1.08994 * 109.46943 * 85.66939 * 1 2 3 25 25 H 1.09007 * 117.49532 * 359.97438 * 4 2 1 26 26 H 1.09001 * 117.49984 * 214.96908 * 4 2 1 27 27 H 1.08999 * 109.47085 * 356.38499 * 7 5 4 28 28 H 1.08996 * 109.47357 * 236.37701 * 7 5 4 29 29 H 1.09004 * 109.47457 * 183.95363 * 9 8 7 30 30 H 1.09001 * 109.46615 * 303.95014 * 9 8 7 31 31 H 1.08990 * 109.47358 * 63.94680 * 9 8 7 32 32 H 1.08993 * 109.47164 * 289.99976 * 10 8 7 33 33 H 1.08996 * 109.46920 * 50.00010 * 10 8 7 34 34 H 1.09002 * 109.46936 * 299.99708 * 11 10 8 35 35 H 1.08996 * 109.47340 * 60.00144 * 11 10 8 36 36 H 1.08999 * 109.47452 * 300.00348 * 12 11 10 37 37 H 1.09012 * 109.47215 * 59.99738 * 12 11 10 38 38 H 1.08999 * 109.47360 * 300.00869 * 13 12 11 39 39 H 1.09012 * 109.46651 * 59.99857 * 13 12 11 40 40 H 0.97000 * 120.00212 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2370 -1.1210 0.7645 5 6 2.2364 -1.1208 -0.7654 6 1 1.6112 -1.8580 -1.2690 7 6 3.5487 -0.7753 -1.4723 8 7 4.0094 -1.9369 -2.2445 9 6 3.0863 -2.2355 -3.3476 10 6 5.3756 -1.7295 -2.7429 11 6 5.9119 -3.0404 -3.3216 12 6 7.3350 -2.8246 -3.8401 13 6 7.8716 -4.1355 -4.4183 14 6 9.2731 -3.9228 -4.9295 15 1 9.7352 -2.9500 -4.8497 16 6 9.9655 -4.9701 -5.4993 17 7 9.4031 -6.1550 -5.5961 18 14 11.7031 -4.7066 -6.1323 19 1 12.6741 -4.9828 -5.0432 20 1 11.9603 -5.6260 -7.2698 21 1 11.8563 -3.3013 -6.5874 22 1 -0.3633 -0.9263 0.4452 23 1 -0.3633 0.8486 0.5796 24 1 -0.3633 0.0776 -1.0247 25 1 1.6120 -1.8586 1.2681 26 1 3.1722 -0.8751 1.2676 27 1 4.3021 -0.5103 -0.7305 28 1 3.3884 0.0674 -2.1446 29 1 3.4127 -3.1407 -3.8597 30 1 2.0822 -2.3846 -2.9508 31 1 3.0791 -1.4027 -4.0508 32 1 5.3667 -0.9659 -3.5205 33 1 6.0162 -1.4055 -1.9227 34 1 5.9208 -3.8041 -2.5440 35 1 5.2713 -3.3644 -4.1418 36 1 7.3266 -2.0607 -4.6176 37 1 7.9755 -2.5007 -3.0196 38 1 7.8801 -4.8992 -3.6406 39 1 7.2312 -4.4598 -5.2388 40 1 9.8904 -6.8919 -5.9966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395428362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:20 Heat of formation + Delta-G solvation = -1.709110 kcal Electronic energy + Delta-G solvation = -15073.481242 eV Core-core repulsion = 12694.982496 eV Total energy + Delta-G solvation = -2378.498746 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.79036 -36.85404 -34.22887 -32.18113 -29.57789 -28.44872 -27.11064 -25.48359 -23.26288 -21.24122 -20.52958 -20.29000 -19.91203 -16.20667 -15.77597 -15.55507 -15.34108 -14.43400 -14.20238 -13.99171 -13.74254 -13.29006 -12.61285 -12.48698 -12.39427 -12.09615 -11.76169 -11.63323 -11.57464 -11.44171 -11.03674 -10.92890 -10.50097 -10.44122 -10.31494 -10.11040 -9.89485 -9.56275 -9.21356 -8.96543 -8.29974 -8.20471 -5.94949 -3.97066 3.34621 3.40499 3.44028 3.52366 4.00800 4.49888 4.56013 4.67720 4.78681 5.06445 5.23365 5.28023 5.31620 5.40473 5.47705 5.50440 5.53088 5.59463 5.67670 5.70713 5.77327 5.79571 5.94624 5.99109 6.04691 6.17618 6.20713 6.31575 6.57956 6.86801 7.02540 7.13533 7.17832 7.30815 7.74593 7.91004 8.06583 8.49452 9.10577 9.66616 11.16457 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.079865 B = 0.003451 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.509530 B = 8112.759476 C = 8202.155155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.160 4.160 3 H 0.101 0.899 4 C -0.170 4.170 5 C -0.140 4.140 6 H 0.108 0.892 7 C 0.085 3.915 8 N -0.540 5.540 9 C 0.021 3.979 10 C 0.056 3.944 11 C -0.113 4.113 12 C -0.109 4.109 13 C 0.021 3.979 14 C -0.519 4.519 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.274 1.274 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.022 0.978 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.134 11.395 9.609 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.179 4.179 3 H 0.119 0.881 4 C -0.207 4.207 5 C -0.159 4.159 6 H 0.126 0.874 7 C -0.043 4.043 8 N -0.264 5.264 9 C -0.128 4.128 10 C -0.071 4.071 11 C -0.151 4.151 12 C -0.147 4.147 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.072 0.928 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.199 1.199 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.041 0.959 32 H 0.048 0.952 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.092 10.814 9.854 21.749 hybrid contribution 0.998 0.725 -0.921 1.539 sum -15.094 11.539 8.933 20.995 Atomic orbital electron populations 1.21342 0.92961 1.01811 1.01703 1.22412 0.95165 0.94685 1.05652 0.88120 1.23156 1.02329 1.00850 0.94341 1.22416 0.98357 1.01142 0.93951 0.87429 1.21671 0.94807 0.91339 0.96529 1.61981 1.02733 1.37621 1.24075 1.22465 0.96616 1.00985 0.92693 1.22251 0.88154 0.98329 0.98359 1.21664 0.97557 0.95849 1.00055 1.21600 0.93185 1.00852 0.99108 1.19086 0.95344 0.91380 0.95763 1.21296 0.99741 0.95998 1.38749 0.92791 1.25034 0.98094 0.95279 0.96153 1.69969 1.37372 1.01031 1.45227 0.86613 0.85021 0.77971 0.78502 1.20679 1.21250 1.19934 0.92574 0.92327 0.92355 0.88982 0.88873 0.90845 0.94824 0.90687 0.91729 0.95937 0.95214 0.91148 0.91695 0.92559 0.93743 0.93504 0.96608 0.96754 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 10.19 37.16 0.38 -0.50 16 2 C -0.16 -1.38 6.13 -90.61 -0.56 -1.93 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.17 -1.56 9.82 -26.73 -0.26 -1.83 16 5 C -0.14 -1.42 5.40 -90.62 -0.49 -1.91 16 6 H 0.11 1.13 6.36 -51.93 -0.33 0.80 16 7 C 0.08 0.97 5.24 -3.82 -0.02 0.95 16 8 N -0.54 -7.34 4.76 -242.92 -1.16 -8.50 16 9 C 0.02 0.25 9.15 60.07 0.55 0.80 16 10 C 0.06 0.84 4.96 -3.82 -0.02 0.82 16 11 C -0.11 -2.02 5.14 -26.73 -0.14 -2.16 16 12 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 13 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 14 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 15 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.06 0.40 7.90 -51.93 -0.41 -0.01 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.79 8.05 -51.93 -0.42 0.38 16 26 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 27 H 0.07 0.83 7.66 -51.93 -0.40 0.43 16 28 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.07 0.99 6.47 -51.93 -0.34 0.65 16 30 H 0.06 0.70 6.22 -51.93 -0.32 0.38 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.07 1.02 7.93 -51.93 -0.41 0.61 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.06 1.00 6.55 -51.93 -0.34 0.66 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.97 8.14 -51.92 -0.42 0.55 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.01 0.40 8.14 -51.92 -0.42 -0.02 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 320.37 15.07 4.83 4.83 Total: -1.00 -30.42 320.37 -9.43 -39.85 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: -7.57 Total: -4.67 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -1.24 Total: -21.71 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: -0.42 Total: -35.35 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.42 -9.43 -39.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395428362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.143 kcal (2) G-P(sol) polarization free energy of solvation -30.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds