Wall clock time and date at job start Mon Mar 30 2020 03:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 115.55273 * 2 1 4 4 C 1.53003 * 117.52084 * 145.70551 * 2 1 3 5 5 C 1.52996 * 60.00285 * 107.47511 * 4 2 1 6 6 H 1.08993 * 117.52350 * 252.52104 * 5 4 2 7 7 C 1.53006 * 117.49518 * 107.48754 * 5 4 2 8 8 N 1.46898 * 109.46682 * 116.38043 * 7 5 4 9 9 C 1.46902 * 111.00283 * 66.04945 * 8 7 5 10 10 C 1.46906 * 110.99888 * 189.99906 * 8 7 5 11 11 C 1.53000 * 109.47072 * 170.00122 * 10 8 7 12 12 C 1.52996 * 109.47188 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47642 * 179.97438 * 12 11 10 14 14 C 1.50696 * 109.47582 * 179.97438 * 13 12 11 15 15 H 1.07995 * 119.99841 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00084 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00305 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00096 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47519 * 89.99330 * 18 16 14 20 20 H 1.48500 * 109.47207 * 209.99692 * 18 16 14 21 21 H 1.48502 * 109.46822 * 329.99437 * 18 16 14 22 22 H 1.09003 * 109.47085 * 205.67136 * 1 2 3 23 23 H 1.08998 * 109.46746 * 325.66909 * 1 2 3 24 24 H 1.08994 * 109.46943 * 85.66939 * 1 2 3 25 25 H 1.09007 * 117.49532 * 359.97438 * 4 2 1 26 26 H 1.09001 * 117.49984 * 214.96908 * 4 2 1 27 27 H 1.08999 * 109.47085 * 356.38499 * 7 5 4 28 28 H 1.08996 * 109.47357 * 236.37701 * 7 5 4 29 29 H 1.09004 * 109.47457 * 183.95363 * 9 8 7 30 30 H 1.09001 * 109.46615 * 303.95014 * 9 8 7 31 31 H 1.08990 * 109.47358 * 63.94680 * 9 8 7 32 32 H 1.08993 * 109.47164 * 289.99976 * 10 8 7 33 33 H 1.08996 * 109.46920 * 50.00010 * 10 8 7 34 34 H 1.09002 * 109.46936 * 299.99708 * 11 10 8 35 35 H 1.08996 * 109.47340 * 60.00144 * 11 10 8 36 36 H 1.08999 * 109.47452 * 300.00348 * 12 11 10 37 37 H 1.09012 * 109.47215 * 59.99738 * 12 11 10 38 38 H 1.08999 * 109.47360 * 300.00869 * 13 12 11 39 39 H 1.09012 * 109.46651 * 59.99857 * 13 12 11 40 40 H 0.97000 * 120.00212 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2370 -1.1210 0.7645 5 6 2.2364 -1.1208 -0.7654 6 1 1.6112 -1.8580 -1.2690 7 6 3.5487 -0.7753 -1.4723 8 7 4.0094 -1.9369 -2.2445 9 6 3.0863 -2.2355 -3.3476 10 6 5.3756 -1.7295 -2.7429 11 6 5.9119 -3.0404 -3.3216 12 6 7.3350 -2.8246 -3.8401 13 6 7.8716 -4.1355 -4.4183 14 6 9.2731 -3.9228 -4.9295 15 1 9.7352 -2.9500 -4.8497 16 6 9.9655 -4.9701 -5.4993 17 7 9.4031 -6.1550 -5.5961 18 14 11.7031 -4.7066 -6.1323 19 1 12.6741 -4.9828 -5.0432 20 1 11.9603 -5.6260 -7.2698 21 1 11.8563 -3.3013 -6.5874 22 1 -0.3633 -0.9263 0.4452 23 1 -0.3633 0.8486 0.5796 24 1 -0.3633 0.0776 -1.0247 25 1 1.6120 -1.8586 1.2681 26 1 3.1722 -0.8751 1.2676 27 1 4.3021 -0.5103 -0.7305 28 1 3.3884 0.0674 -2.1446 29 1 3.4127 -3.1407 -3.8597 30 1 2.0822 -2.3846 -2.9508 31 1 3.0791 -1.4027 -4.0508 32 1 5.3667 -0.9659 -3.5205 33 1 6.0162 -1.4055 -1.9227 34 1 5.9208 -3.8041 -2.5440 35 1 5.2713 -3.3644 -4.1418 36 1 7.3266 -2.0607 -4.6176 37 1 7.9755 -2.5007 -3.0196 38 1 7.8801 -4.8992 -3.6406 39 1 7.2312 -4.4598 -5.2388 40 1 9.8904 -6.8919 -5.9966 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395428362.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:20 Heat of formation + Delta-G solvation = -18.583743 kcal Electronic energy + Delta-G solvation = -15074.212981 eV Core-core repulsion = 12694.982496 eV Total energy + Delta-G solvation = -2379.230485 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.67465 -37.89324 -36.04014 -34.12584 -30.82323 -29.67278 -28.02414 -27.06714 -24.81735 -22.46788 -21.66832 -21.49828 -21.01456 -18.42834 -16.83680 -16.66720 -16.53424 -16.18794 -15.60787 -14.88398 -14.76750 -14.35877 -14.04289 -13.86404 -13.62592 -13.23082 -13.12027 -12.96733 -12.79324 -12.67704 -12.36380 -12.26934 -12.17670 -11.98893 -11.89638 -11.34162 -11.27596 -11.05264 -10.81260 -10.57965 -10.55512 -9.24897 -8.19875 -6.31569 1.39393 1.41362 1.52451 2.40862 2.72529 3.09177 3.12733 3.77329 3.94968 4.03192 4.09218 4.18900 4.38475 4.41071 4.48241 4.54309 4.56632 4.63929 4.73174 4.77630 4.85299 4.90131 4.95990 4.97446 4.99800 5.07947 5.20849 5.23010 5.27579 5.33612 5.37478 5.47835 5.55363 5.77628 5.86835 6.11258 6.17859 6.26260 6.86063 7.37794 8.92164 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.079865 B = 0.003451 C = 0.003413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 350.509530 B = 8112.759476 C = 8202.155155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.149 4.149 3 H 0.106 0.894 4 C -0.173 4.173 5 C -0.152 4.152 6 H 0.103 0.897 7 C 0.087 3.913 8 N -0.552 5.552 9 C 0.021 3.979 10 C 0.066 3.934 11 C -0.103 4.103 12 C -0.097 4.097 13 C 0.024 3.976 14 C -0.545 4.545 15 H 0.060 0.940 16 C -0.004 4.004 17 N -0.935 5.935 18 Si 0.967 3.033 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.263 1.263 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.027 0.973 32 H 0.034 0.966 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.051 0.949 38 H -0.011 1.011 39 H -0.011 1.011 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.150 12.946 9.997 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.168 4.168 3 H 0.124 0.876 4 C -0.210 4.210 5 C -0.170 4.170 6 H 0.121 0.879 7 C -0.040 4.040 8 N -0.276 5.276 9 C -0.127 4.127 10 C -0.062 4.062 11 C -0.141 4.141 12 C -0.135 4.135 13 C -0.014 4.014 14 C -0.583 4.583 15 H 0.078 0.922 16 C -0.201 4.201 17 N -0.576 5.576 18 Si 0.791 3.209 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.075 0.925 23 H 0.088 0.912 24 H 0.079 0.921 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.099 0.901 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.123 12.381 10.252 22.767 hybrid contribution 0.955 0.211 -1.024 1.416 sum -15.167 12.592 9.228 21.766 Atomic orbital electron populations 1.21368 0.91952 1.02407 1.02106 1.22494 0.95926 0.94413 1.03947 0.87603 1.23218 1.02644 1.01426 0.93697 1.22348 0.98001 1.02297 0.94387 0.87888 1.21684 0.95462 0.90552 0.96334 1.61934 1.02210 1.38963 1.24515 1.22470 0.97156 1.00504 0.92556 1.22044 0.89260 0.96278 0.98581 1.21486 0.95545 0.97428 0.99622 1.21404 0.95107 0.97793 0.99163 1.19013 0.94681 0.93451 0.94216 1.21746 1.00919 0.96476 1.39142 0.92157 1.26035 1.03014 0.94842 0.96205 1.70107 1.39444 1.02049 1.45954 0.85419 0.78989 0.78445 0.78026 1.19673 1.20655 1.18670 0.92465 0.91209 0.92132 0.88549 0.88868 0.90731 0.94439 0.91991 0.90136 0.95487 0.94730 0.90531 0.92801 0.92914 0.93186 0.92978 0.99298 0.99299 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 10.19 71.98 0.73 -0.77 16 2 C -0.15 -2.26 6.13 -10.79 -0.07 -2.32 16 3 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.17 -2.91 9.82 30.59 0.30 -2.61 16 5 C -0.15 -2.83 5.40 -10.79 -0.06 -2.89 16 6 H 0.10 2.02 6.36 -2.39 -0.02 2.00 16 7 C 0.09 1.86 5.24 86.31 0.45 2.31 16 8 N -0.55 -14.37 4.76 -922.46 -4.39 -18.77 16 9 C 0.02 0.50 9.15 127.69 1.17 1.67 16 10 C 0.07 1.90 4.96 86.30 0.43 2.33 16 11 C -0.10 -3.67 5.14 30.59 0.16 -3.51 16 12 C -0.10 -4.10 5.15 30.59 0.16 -3.95 16 13 C 0.02 1.29 4.97 29.85 0.15 1.44 16 14 C -0.54 -32.04 9.11 25.60 0.23 -31.81 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 17 N -0.94 -58.48 13.29 21.45 0.28 -58.20 16 18 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 19 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H 0.06 0.70 7.90 -2.39 -0.02 0.68 16 23 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.72 16 25 H 0.10 1.52 8.05 -2.38 -0.02 1.50 16 26 H 0.09 1.56 8.03 -2.39 -0.02 1.54 16 27 H 0.07 1.56 7.66 -2.39 -0.02 1.54 16 28 H 0.04 0.77 8.12 -2.39 -0.02 0.75 16 29 H 0.06 1.62 6.47 -2.38 -0.02 1.61 16 30 H 0.08 1.64 6.22 -2.39 -0.01 1.62 16 31 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16 33 H 0.08 2.11 7.93 -2.39 -0.02 2.09 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.05 1.90 6.55 -2.39 -0.02 1.89 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 Total: -1.00 -64.75 320.37 2.99 -61.76 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: 0.96 Total: 7.93 kcal Atomic # 6 Polarization: -43.98 SS G_CDS: 4.12 Total: -39.86 kcal Atomic # 7 Polarization: -72.85 SS G_CDS: -4.11 Total: -76.96 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -64.75 2.99 -61.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395428362.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.175 kcal (2) G-P(sol) polarization free energy of solvation -64.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds