Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47322 * 2 1 4 4 H 1.08998 * 109.47120 * 306.00147 * 3 2 1 5 5 C 1.50697 * 109.46795 * 185.99758 * 3 2 1 6 6 H 1.07995 * 120.00808 * 275.00124 * 5 3 2 7 7 C 1.37879 * 119.99611 * 95.00871 * 5 3 2 8 8 N 1.31522 * 119.99957 * 184.83434 * 7 5 3 9 9 Si 1.86797 * 120.00246 * 4.83384 * 7 5 3 10 10 H 1.48501 * 109.47024 * 84.86318 * 9 7 5 11 11 H 1.48495 * 109.47646 * 204.86627 * 9 7 5 12 12 H 1.48507 * 109.47221 * 324.86922 * 9 7 5 13 13 N 1.46897 * 109.46705 * 66.00312 * 3 2 1 14 14 C 1.46905 * 110.99984 * 274.99565 * 13 3 2 15 15 H 1.08998 * 115.54895 * 350.59221 * 14 13 3 16 16 C 1.53003 * 117.51571 * 136.28182 * 14 13 3 17 17 C 1.52997 * 117.49999 * 204.91386 * 14 13 3 18 18 C 1.53001 * 117.49867 * 0.02562 * 17 14 13 19 19 C 1.52992 * 117.49921 * 145.00163 * 17 14 13 20 20 C 1.52998 * 109.47340 * 180.02562 * 19 17 14 21 21 C 1.53008 * 109.46934 * 299.99865 * 19 17 14 22 22 H 1.08999 * 109.47540 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46871 * 300.00097 * 1 2 3 24 24 H 1.09001 * 109.47201 * 59.99590 * 1 2 3 25 25 H 1.09007 * 109.46565 * 240.00144 * 2 1 3 26 26 H 1.08992 * 109.47183 * 120.00696 * 2 1 3 27 27 H 0.96998 * 119.99709 * 180.02562 * 8 7 5 28 28 H 1.00898 * 111.00054 * 151.04672 * 13 3 2 29 29 H 1.08996 * 117.50026 * 214.96917 * 16 14 13 30 30 H 1.09000 * 117.50086 * 359.97438 * 16 14 13 31 31 H 1.08995 * 109.47171 * 59.99943 * 18 17 14 32 32 H 1.09004 * 109.47028 * 180.02562 * 18 17 14 33 33 H 1.08999 * 109.47288 * 299.99872 * 18 17 14 34 34 H 1.08997 * 109.47847 * 59.99840 * 19 17 14 35 35 H 1.08997 * 109.47414 * 59.99384 * 20 19 17 36 36 H 1.08997 * 109.47470 * 179.97438 * 20 19 17 37 37 H 1.09001 * 109.47139 * 299.99264 * 20 19 17 38 38 H 1.08997 * 109.46880 * 300.00041 * 21 19 17 39 39 H 1.08996 * 109.47061 * 59.99936 * 21 19 17 40 40 H 1.08997 * 109.46920 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5917 1.9864 -0.8314 5 6 3.5397 1.4449 -0.1485 6 1 4.1688 1.3319 0.7220 7 6 4.1087 1.5917 -1.3958 8 7 5.4128 1.4988 -1.5387 9 14 3.0274 1.9224 -2.8826 10 1 2.7607 3.3796 -2.9864 11 1 3.7193 1.4571 -4.1113 12 1 1.7422 1.1936 -2.7320 13 7 1.6722 2.0918 1.2653 14 6 0.3108 2.6399 1.1995 15 1 -0.1510 2.6342 0.2122 16 6 -0.6011 2.4144 2.4072 17 6 -0.0272 3.8056 2.1309 18 6 1.0786 4.3117 3.0592 19 6 -0.9877 4.8742 1.6053 20 6 -1.1953 5.9454 2.6778 21 6 -0.3962 5.5183 0.3497 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 5.8131 1.6024 -2.4162 28 1 2.3388 2.8082 1.5112 29 1 -1.6628 2.2606 2.2144 30 1 -0.1911 1.8589 3.2507 31 1 1.9243 4.6551 2.4635 32 1 0.6984 5.1374 3.6608 33 1 1.4008 3.5031 3.7152 34 1 -1.9450 4.4139 1.3608 35 1 -0.2379 6.4056 2.9218 36 1 -1.8792 6.7069 2.3032 37 1 -1.6166 5.4869 3.5725 38 1 0.5611 5.9787 0.5942 39 1 -0.2478 4.7555 -0.4145 40 1 -1.0802 6.2800 -0.0245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397274187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = 0.715155 kcal Electronic energy + Delta-G solvation = -16587.651924 eV Core-core repulsion = 14209.258302 eV Total energy + Delta-G solvation = -2378.393622 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.01528 -35.75923 -33.15508 -31.95669 -30.03845 -28.43002 -26.77271 -26.61886 -22.70839 -22.20552 -20.74050 -19.49800 -18.09281 -16.84881 -15.65794 -14.99932 -14.71826 -14.00683 -13.87239 -13.08388 -12.86621 -12.78978 -12.72139 -12.33729 -12.16768 -12.04719 -11.97959 -11.57830 -11.26951 -11.04315 -10.96119 -10.88467 -10.70289 -10.38772 -10.13514 -10.06796 -9.79548 -9.54456 -9.13472 -8.93098 -8.58589 -7.28053 -6.12699 -4.13170 3.24038 3.33218 3.35910 4.17913 4.37156 4.71132 4.97200 5.04943 5.23668 5.25689 5.37046 5.54522 5.62670 5.73025 5.82759 5.94737 5.96759 6.04556 6.08551 6.10719 6.12472 6.16777 6.22072 6.24779 6.33386 6.40722 6.47640 6.52315 6.67237 6.72393 6.78827 7.04547 7.09987 7.42482 7.66198 8.03171 8.41995 8.66496 8.97118 9.51907 11.00282 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.008536 C = 0.007915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.528438 B = 3279.555981 C = 3536.830174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.103 4.103 3 C 0.188 3.812 4 H 0.005 0.995 5 C -0.520 4.520 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.873 3.127 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.651 5.651 14 C 0.045 3.955 15 H 0.088 0.912 16 C -0.171 4.171 17 C -0.143 4.143 18 C -0.116 4.116 19 C -0.056 4.056 20 C -0.144 4.144 21 C -0.146 4.146 22 H 0.034 0.966 23 H 0.065 0.935 24 H 0.034 0.966 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.264 0.736 28 H 0.343 0.657 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 6.113 5.511 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C 0.080 3.920 4 H 0.023 0.977 5 C -0.558 4.558 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.700 3.300 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.283 5.283 14 C -0.066 4.066 15 H 0.105 0.895 16 C -0.210 4.210 17 C -0.145 4.145 18 C -0.173 4.173 19 C -0.075 4.075 20 C -0.201 4.201 21 C -0.203 4.203 22 H 0.053 0.947 23 H 0.084 0.916 24 H 0.053 0.947 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.761 5.523 5.659 15.012 hybrid contribution -0.369 0.822 -1.539 1.783 sum -13.130 6.345 4.120 15.154 Atomic orbital electron populations 1.22048 0.98728 0.99680 1.01105 1.21638 0.92564 0.99233 1.00738 1.19612 0.95669 0.90958 0.85746 0.97700 1.21089 0.89328 1.50327 0.95056 0.90288 1.25014 0.94770 0.94422 0.98586 1.69905 1.09908 1.49602 1.23900 0.86925 0.81365 0.78997 0.82716 1.20314 1.21431 1.18840 1.60438 0.99918 1.32652 1.35264 1.22627 0.93312 0.97501 0.93207 0.89479 1.23373 0.98035 0.97787 1.01800 1.21887 0.99999 0.89438 1.03129 1.21315 0.96793 1.00942 0.98204 1.20612 0.97194 0.94709 0.94996 1.21878 1.01445 0.98152 0.98615 1.21824 1.00805 1.00313 0.97385 0.94724 0.91649 0.94658 0.93289 0.92382 0.92582 0.83553 0.90006 0.88809 0.92438 0.92202 0.92079 0.91692 0.92172 0.93313 0.92785 0.92513 0.92677 0.93245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.88 37.16 0.33 -2.60 16 2 C -0.10 -2.26 5.59 -26.73 -0.15 -2.41 16 3 C 0.19 4.41 1.86 -68.87 -0.13 4.28 16 4 H 0.01 0.13 4.73 -51.93 -0.25 -0.12 16 5 C -0.52 -14.36 8.84 -34.44 -0.30 -14.67 16 6 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 7 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 9 Si 0.87 21.48 26.99 -169.99 -4.59 16.89 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.26 -6.29 6.82 56.52 0.39 -5.90 16 13 N -0.65 -13.27 6.33 -100.95 -0.64 -13.91 16 14 C 0.05 0.77 3.24 -67.71 -0.22 0.55 16 15 H 0.09 1.58 6.57 -51.93 -0.34 1.24 16 16 C -0.17 -2.53 8.69 -26.73 -0.23 -2.76 16 17 C -0.14 -2.05 1.91 -154.51 -0.29 -2.35 16 18 C -0.12 -1.59 8.43 37.16 0.31 -1.28 16 19 C -0.06 -0.71 2.99 -90.62 -0.27 -0.98 16 20 C -0.14 -1.53 8.20 37.16 0.30 -1.23 16 21 C -0.15 -1.92 9.03 37.16 0.34 -1.58 16 22 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 1.15 5.01 -51.93 -0.26 0.89 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.34 7.16 6.82 -39.29 -0.27 6.89 16 29 H 0.08 1.09 8.05 -51.93 -0.42 0.68 16 30 H 0.09 1.43 8.05 -51.93 -0.42 1.01 16 31 H 0.06 0.84 7.59 -51.93 -0.39 0.45 16 32 H 0.06 0.71 5.58 -51.93 -0.29 0.42 16 33 H 0.06 0.87 7.90 -51.93 -0.41 0.46 16 34 H 0.06 0.80 7.90 -51.93 -0.41 0.39 16 35 H 0.06 0.64 6.45 -51.93 -0.33 0.30 16 36 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.80 7.29 -51.93 -0.38 0.43 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 304.86 15.07 4.59 4.59 Total: -1.00 -28.40 304.86 -7.40 -35.80 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -7.12 Total: 5.88 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: -0.41 Total: -22.99 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.13 Total: -40.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.59 Total: 16.89 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.40 -7.40 -35.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397274187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.515 kcal (2) G-P(sol) polarization free energy of solvation -28.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds