Wall clock time and date at job start Mon Mar 30 2020 02:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47322 * 2 1 4 4 H 1.08998 * 109.47120 * 306.00147 * 3 2 1 5 5 C 1.50697 * 109.46795 * 185.99758 * 3 2 1 6 6 H 1.07995 * 120.00808 * 275.00124 * 5 3 2 7 7 C 1.37879 * 119.99611 * 95.00871 * 5 3 2 8 8 N 1.31522 * 119.99957 * 184.83434 * 7 5 3 9 9 Si 1.86797 * 120.00246 * 4.83384 * 7 5 3 10 10 H 1.48501 * 109.47024 * 84.86318 * 9 7 5 11 11 H 1.48495 * 109.47646 * 204.86627 * 9 7 5 12 12 H 1.48507 * 109.47221 * 324.86922 * 9 7 5 13 13 N 1.46897 * 109.46705 * 66.00312 * 3 2 1 14 14 C 1.46905 * 110.99984 * 274.99565 * 13 3 2 15 15 H 1.08998 * 115.54895 * 350.59221 * 14 13 3 16 16 C 1.53003 * 117.51571 * 136.28182 * 14 13 3 17 17 C 1.52997 * 117.49999 * 204.91386 * 14 13 3 18 18 C 1.53001 * 117.49867 * 0.02562 * 17 14 13 19 19 C 1.52992 * 117.49921 * 145.00163 * 17 14 13 20 20 C 1.52998 * 109.47340 * 180.02562 * 19 17 14 21 21 C 1.53008 * 109.46934 * 299.99865 * 19 17 14 22 22 H 1.08999 * 109.47540 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46871 * 300.00097 * 1 2 3 24 24 H 1.09001 * 109.47201 * 59.99590 * 1 2 3 25 25 H 1.09007 * 109.46565 * 240.00144 * 2 1 3 26 26 H 1.08992 * 109.47183 * 120.00696 * 2 1 3 27 27 H 0.96998 * 119.99709 * 180.02562 * 8 7 5 28 28 H 1.00898 * 111.00054 * 151.04672 * 13 3 2 29 29 H 1.08996 * 117.50026 * 214.96917 * 16 14 13 30 30 H 1.09000 * 117.50086 * 359.97438 * 16 14 13 31 31 H 1.08995 * 109.47171 * 59.99943 * 18 17 14 32 32 H 1.09004 * 109.47028 * 180.02562 * 18 17 14 33 33 H 1.08999 * 109.47288 * 299.99872 * 18 17 14 34 34 H 1.08997 * 109.47847 * 59.99840 * 19 17 14 35 35 H 1.08997 * 109.47414 * 59.99384 * 20 19 17 36 36 H 1.08997 * 109.47470 * 179.97438 * 20 19 17 37 37 H 1.09001 * 109.47139 * 299.99264 * 20 19 17 38 38 H 1.08997 * 109.46880 * 300.00041 * 21 19 17 39 39 H 1.08996 * 109.47061 * 59.99936 * 21 19 17 40 40 H 1.08997 * 109.46920 * 180.02562 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5917 1.9864 -0.8314 5 6 3.5397 1.4449 -0.1485 6 1 4.1688 1.3319 0.7220 7 6 4.1087 1.5917 -1.3958 8 7 5.4128 1.4988 -1.5387 9 14 3.0274 1.9224 -2.8826 10 1 2.7607 3.3796 -2.9864 11 1 3.7193 1.4571 -4.1113 12 1 1.7422 1.1936 -2.7320 13 7 1.6722 2.0918 1.2653 14 6 0.3108 2.6399 1.1995 15 1 -0.1510 2.6342 0.2122 16 6 -0.6011 2.4144 2.4072 17 6 -0.0272 3.8056 2.1309 18 6 1.0786 4.3117 3.0592 19 6 -0.9877 4.8742 1.6053 20 6 -1.1953 5.9454 2.6778 21 6 -0.3962 5.5183 0.3497 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 5.8131 1.6024 -2.4162 28 1 2.3388 2.8082 1.5112 29 1 -1.6628 2.2606 2.2144 30 1 -0.1911 1.8589 3.2507 31 1 1.9243 4.6551 2.4635 32 1 0.6984 5.1374 3.6608 33 1 1.4008 3.5031 3.7152 34 1 -1.9450 4.4139 1.3608 35 1 -0.2379 6.4056 2.9218 36 1 -1.8792 6.7069 2.3032 37 1 -1.6166 5.4869 3.5725 38 1 0.5611 5.9787 0.5942 39 1 -0.2478 4.7555 -0.4145 40 1 -1.0802 6.2800 -0.0245 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397274187.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:14 Heat of formation + Delta-G solvation = -16.415152 kcal Electronic energy + Delta-G solvation = -16588.394750 eV Core-core repulsion = 14209.258302 eV Total energy + Delta-G solvation = -2379.136448 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.27323 -37.38464 -34.64291 -33.80123 -31.60997 -29.60852 -28.51374 -27.69388 -24.51587 -23.29190 -22.10615 -21.26908 -19.48666 -18.72285 -17.19004 -16.40205 -16.08628 -15.78714 -15.14056 -14.76392 -14.30525 -14.21201 -13.85750 -13.68772 -13.65042 -13.46273 -13.33934 -13.04960 -12.75378 -12.51544 -12.29037 -12.07901 -11.99069 -11.88727 -11.73196 -11.67356 -11.36705 -11.09303 -10.89610 -10.72225 -10.32459 -8.86407 -8.33862 -6.38492 1.27909 1.30499 1.41104 2.28877 2.94094 3.00574 3.41346 3.88504 3.93136 4.10061 4.28689 4.38285 4.48700 4.51678 4.56017 4.61005 4.64309 4.83472 4.84754 4.87963 4.99209 5.00852 5.05136 5.08306 5.15104 5.21594 5.22533 5.25637 5.33001 5.43389 5.46746 5.47201 5.52541 5.65580 5.77342 6.08810 6.55792 6.71245 6.86447 7.31135 8.82889 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027190 B = 0.008536 C = 0.007915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.528438 B = 3279.555981 C = 3536.830174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C 0.195 3.805 4 H 0.001 0.999 5 C -0.522 4.522 6 H 0.036 0.964 7 C 0.019 3.981 8 N -0.943 5.943 9 Si 0.936 3.064 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.249 1.249 13 N -0.652 5.652 14 C 0.017 3.983 15 H 0.082 0.918 16 C -0.155 4.155 17 C -0.129 4.129 18 C -0.115 4.115 19 C -0.055 4.055 20 C -0.140 4.140 21 C -0.146 4.146 22 H 0.056 0.944 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.267 0.733 28 H 0.335 0.665 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.046 0.954 39 H 0.035 0.965 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.864 6.997 5.633 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C 0.086 3.914 4 H 0.019 0.981 5 C -0.560 4.560 6 H 0.054 0.946 7 C -0.179 4.179 8 N -0.583 5.583 9 Si 0.760 3.240 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.173 1.173 13 N -0.283 5.283 14 C -0.094 4.094 15 H 0.099 0.901 16 C -0.193 4.193 17 C -0.130 4.130 18 C -0.172 4.172 19 C -0.074 4.074 20 C -0.197 4.197 21 C -0.203 4.203 22 H 0.075 0.925 23 H 0.093 0.907 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.155 0.845 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.888 6.405 5.800 18.085 hybrid contribution 0.640 0.557 -1.471 1.698 sum -15.247 6.961 4.330 17.312 Atomic orbital electron populations 1.21931 0.95456 1.01357 1.01738 1.21546 0.95471 0.97628 0.99536 1.19444 0.92630 0.92291 0.87016 0.98116 1.21325 0.91577 1.49467 0.93679 0.94569 1.25831 0.95971 0.94360 1.01770 1.70048 1.11923 1.51518 1.24796 0.85898 0.79972 0.79336 0.78749 1.19395 1.21072 1.17258 1.60368 1.01592 1.32995 1.33361 1.22593 0.91765 1.00939 0.94119 0.90074 1.23395 0.98536 0.97654 0.99695 1.22004 0.99960 0.89713 1.01326 1.21331 0.96346 1.01484 0.98086 1.20656 0.96808 0.94670 0.95244 1.21846 1.01862 0.97829 0.98196 1.21826 1.00989 1.00265 0.97267 0.92536 0.90742 0.94278 0.94769 0.93408 0.92444 0.84520 0.87796 0.89274 0.93875 0.89808 0.92912 0.90749 0.92313 0.91810 0.92004 0.93438 0.94603 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.10 8.88 71.98 0.64 -4.46 16 2 C -0.10 -4.48 5.59 30.60 0.17 -4.30 16 3 C 0.20 9.19 1.86 44.17 0.08 9.27 16 4 H 0.00 0.06 4.73 -2.39 -0.01 0.05 16 5 C -0.52 -29.90 8.84 25.60 0.23 -29.67 16 6 H 0.04 2.32 8.06 -2.91 -0.02 2.30 16 7 C 0.02 1.11 5.47 84.65 0.46 1.57 16 8 N -0.94 -58.87 13.96 21.45 0.30 -58.58 16 9 Si 0.94 44.59 26.99 68.60 1.85 46.45 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.25 -11.16 6.82 99.48 0.68 -10.48 16 13 N -0.65 -26.69 6.33 -473.31 -2.99 -29.69 16 14 C 0.02 0.55 3.24 44.91 0.15 0.70 16 15 H 0.08 2.81 6.57 -2.39 -0.02 2.79 16 16 C -0.15 -4.14 8.69 30.60 0.27 -3.87 16 17 C -0.13 -3.41 1.91 -52.18 -0.10 -3.51 16 18 C -0.12 -3.03 8.43 71.98 0.61 -2.42 16 19 C -0.06 -1.22 2.99 -10.79 -0.03 -1.25 16 20 C -0.14 -2.48 8.20 71.98 0.59 -1.89 16 21 C -0.15 -3.52 9.03 71.98 0.65 -2.87 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.07 2.43 5.01 -2.39 -0.01 2.42 16 24 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.33 14.36 6.82 -89.70 -0.61 13.75 16 29 H 0.10 2.36 8.05 -2.39 -0.02 2.34 16 30 H 0.09 2.51 8.05 -2.39 -0.02 2.49 16 31 H 0.04 1.25 7.59 -2.39 -0.02 1.23 16 32 H 0.08 1.79 5.58 -2.39 -0.01 1.77 16 33 H 0.05 1.46 7.90 -2.39 -0.02 1.44 16 34 H 0.07 1.54 7.90 -2.39 -0.02 1.52 16 35 H 0.06 1.06 6.45 -2.39 -0.02 1.04 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.03 0.99 7.29 -2.39 -0.02 0.97 16 40 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -62.50 304.86 3.22 -59.29 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.35 Total: 25.26 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 3.71 Total: -42.73 kcal Atomic # 7 Polarization: -85.57 SS G_CDS: -2.69 Total: -88.26 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.85 Total: 46.45 kcal Total: -62.50 3.22 -59.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397274187.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.871 kcal (2) G-P(sol) polarization free energy of solvation -62.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds