Wall clock time and date at job start Mon Mar 30 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47625 * 2 1 4 4 H 1.09005 * 109.46782 * 305.83747 * 3 2 1 5 5 C 1.50697 * 109.47533 * 185.83706 * 3 2 1 6 6 H 1.08003 * 119.99705 * 274.99704 * 5 3 2 7 7 C 1.37877 * 120.00266 * 95.00227 * 5 3 2 8 8 N 1.31510 * 120.00088 * 184.83264 * 7 5 3 9 9 Si 1.86798 * 119.99690 * 4.83092 * 7 5 3 10 10 H 1.48504 * 109.47231 * 84.86534 * 9 7 5 11 11 H 1.48504 * 109.46820 * 204.86250 * 9 7 5 12 12 H 1.48493 * 109.47386 * 324.86146 * 9 7 5 13 13 N 1.46900 * 109.46855 * 65.83291 * 3 2 1 14 14 C 1.46906 * 111.00297 * 275.00136 * 13 3 2 15 15 H 1.08999 * 115.55724 * 9.30122 * 14 13 3 16 16 C 1.52994 * 117.50089 * 223.60930 * 14 13 3 17 17 C 1.52998 * 60.03190 * 252.52540 * 16 14 13 18 18 C 1.52992 * 117.50003 * 107.48247 * 17 16 14 19 19 C 1.52998 * 117.49508 * 252.47600 * 17 16 14 20 20 C 1.52999 * 109.47190 * 248.60795 * 19 17 16 21 21 C 1.53006 * 109.47364 * 8.61060 * 19 17 16 22 22 H 1.09001 * 109.46962 * 59.99770 * 1 2 3 23 23 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47052 * 299.99756 * 1 2 3 25 25 H 1.09007 * 109.47040 * 239.99490 * 2 1 3 26 26 H 1.09001 * 109.46962 * 120.00230 * 2 1 3 27 27 H 0.96997 * 120.00420 * 180.02562 * 8 7 5 28 28 H 1.00905 * 111.00070 * 151.04968 * 13 3 2 29 29 H 1.09003 * 117.50020 * 145.01658 * 16 14 13 30 30 H 1.09005 * 117.50041 * 0.02782 * 16 14 13 31 31 H 1.08999 * 109.47584 * 111.39215 * 18 17 16 32 32 H 1.09002 * 109.47216 * 231.38633 * 18 17 16 33 33 H 1.08998 * 109.47659 * 351.38697 * 18 17 16 34 34 H 1.09000 * 109.46976 * 128.60869 * 19 17 16 35 35 H 1.09002 * 109.47245 * 180.02562 * 20 19 17 36 36 H 1.08998 * 109.47075 * 299.99944 * 20 19 17 37 37 H 1.09000 * 109.47101 * 60.00150 * 20 19 17 38 38 H 1.08993 * 109.47228 * 60.00000 * 21 19 17 39 39 H 1.09002 * 109.47047 * 179.97438 * 21 19 17 40 40 H 1.09000 * 109.46917 * 299.99844 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5939 1.9855 -0.8332 5 6 3.5401 1.4448 -0.1445 6 1 4.1668 1.3327 0.7280 7 6 4.1125 1.5903 -1.3904 8 7 5.4169 1.4974 -1.5296 9 14 3.0351 1.9193 -2.8804 10 1 2.7685 3.3764 -2.9866 11 1 3.7306 1.4528 -4.1068 12 1 1.7499 1.1904 -2.7327 13 7 1.6688 2.0930 1.2636 14 6 0.3075 2.6410 1.1936 15 1 -0.2689 2.3572 0.3130 16 6 0.0793 4.0412 1.7663 17 6 -0.4528 2.8150 2.5106 18 6 0.2631 2.4050 3.7991 19 6 -1.9642 2.5778 2.4914 20 6 -2.5332 2.8001 3.8941 21 6 -2.6213 3.5542 1.5138 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.8197 1.6001 -2.4060 28 1 2.3347 2.8097 1.5107 29 1 -0.6473 4.6788 1.2625 30 1 0.9393 4.5561 2.1947 31 1 -0.3925 2.5827 4.6515 32 1 0.5185 1.3464 3.7518 33 1 1.1735 2.9936 3.9120 34 1 -2.1673 1.5548 2.1748 35 1 -3.6099 2.6306 3.8805 36 1 -2.0651 2.1044 4.5905 37 1 -2.3300 3.8231 4.2107 38 1 -2.2160 3.3958 0.5145 39 1 -3.6980 3.3849 1.4998 40 1 -2.4181 4.5772 1.8304 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397274189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:19 Heat of formation + Delta-G solvation = 4.972044 kcal Electronic energy + Delta-G solvation = -16578.307909 eV Core-core repulsion = 14200.098879 eV Total energy + Delta-G solvation = -2378.209030 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.12440 -35.79934 -33.03685 -31.97571 -29.91237 -28.97069 -26.85645 -25.83840 -22.86944 -22.62156 -20.58659 -19.53740 -17.87948 -16.88859 -15.88311 -14.90096 -14.57695 -14.22929 -13.85328 -13.07944 -12.86998 -12.79680 -12.52766 -12.31175 -12.24532 -12.06228 -11.88458 -11.50623 -11.36566 -11.20234 -10.90906 -10.87612 -10.57367 -10.42645 -10.16271 -10.06451 -9.79883 -9.54555 -9.19500 -8.91650 -8.56633 -7.21220 -6.12860 -4.13427 3.24288 3.33293 3.35837 4.20024 4.37068 4.75393 4.99488 5.13260 5.18332 5.29153 5.32929 5.46315 5.66156 5.70071 5.76747 5.89118 5.97346 6.01990 6.03501 6.08361 6.14797 6.19728 6.23995 6.28511 6.37031 6.38667 6.49778 6.53671 6.66231 6.76130 6.80563 7.03121 7.08146 7.41808 7.65325 8.02274 8.41144 8.65857 8.96948 9.51666 11.00124 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036162 B = 0.007517 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.105048 B = 3723.988468 C = 3816.619018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.103 4.103 3 C 0.188 3.812 4 H 0.006 0.994 5 C -0.519 4.519 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.264 1.264 13 N -0.648 5.648 14 C 0.044 3.956 15 H 0.102 0.898 16 C -0.215 4.215 17 C -0.121 4.121 18 C -0.103 4.103 19 C -0.058 4.058 20 C -0.144 4.144 21 C -0.148 4.148 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.264 0.736 28 H 0.342 0.658 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.047 0.953 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.528 3.044 6.537 16.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.142 4.142 3 C 0.080 3.920 4 H 0.023 0.977 5 C -0.558 4.558 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.701 3.299 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.189 1.189 13 N -0.278 5.278 14 C -0.068 4.068 15 H 0.119 0.881 16 C -0.253 4.253 17 C -0.123 4.123 18 C -0.161 4.161 19 C -0.076 4.076 20 C -0.201 4.201 21 C -0.206 4.206 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.523 2.444 6.683 16.172 hybrid contribution -0.293 1.003 -1.546 1.866 sum -14.816 3.447 5.137 16.055 Atomic orbital electron populations 1.22073 0.98829 0.99752 1.00848 1.21643 0.92471 0.99274 1.00800 1.19587 0.95698 0.90886 0.85837 0.97679 1.21081 0.89284 1.50354 0.95062 0.90277 1.25015 0.94770 0.94408 0.98615 1.69898 1.09825 1.49580 1.24014 0.86911 0.81302 0.78977 0.82714 1.20350 1.21440 1.18855 1.60356 0.99720 1.32674 1.35056 1.22805 0.93869 0.94862 0.95237 0.88082 1.23819 1.03361 0.92146 1.06011 1.21769 0.93342 1.02073 0.95098 1.21206 0.98753 1.01962 0.94133 1.20535 0.92442 0.99324 0.95316 1.21878 0.99688 1.01696 0.96814 1.21957 0.99633 0.99594 0.99379 0.94567 0.94633 0.91809 0.93247 0.92335 0.92570 0.83797 0.89177 0.89317 0.93080 0.91924 0.92913 0.91228 0.93378 0.92182 0.92827 0.92693 0.93200 0.92425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 8.60 37.16 0.32 -2.55 16 2 C -0.10 -2.24 5.59 -26.74 -0.15 -2.39 16 3 C 0.19 4.37 1.84 -68.87 -0.13 4.25 16 4 H 0.01 0.13 4.89 -51.93 -0.25 -0.12 16 5 C -0.52 -14.32 8.84 -34.44 -0.30 -14.62 16 6 H 0.08 2.39 8.06 -52.48 -0.42 1.97 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 9 Si 0.87 21.46 26.99 -169.99 -4.59 16.88 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 12 H -0.26 -6.26 6.82 56.52 0.39 -5.88 16 13 N -0.65 -13.12 5.92 -100.92 -0.60 -13.72 16 14 C 0.04 0.75 3.46 -67.68 -0.23 0.52 16 15 H 0.10 1.80 5.56 -51.93 -0.29 1.51 16 16 C -0.21 -3.20 8.91 -26.74 -0.24 -3.44 16 17 C -0.12 -1.74 2.46 -154.48 -0.38 -2.12 16 18 C -0.10 -1.46 8.95 37.15 0.33 -1.13 16 19 C -0.06 -0.71 3.15 -90.62 -0.29 -1.00 16 20 C -0.14 -1.52 8.20 37.16 0.30 -1.21 16 21 C -0.15 -1.69 7.79 37.16 0.29 -1.40 16 22 H 0.04 0.65 7.96 -51.93 -0.41 0.23 16 23 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 1.11 5.75 -51.93 -0.30 0.82 16 25 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.34 7.12 8.14 -39.29 -0.32 6.80 16 29 H 0.09 1.23 5.85 -51.93 -0.30 0.93 16 30 H 0.09 1.34 7.99 -51.93 -0.42 0.93 16 31 H 0.05 0.62 5.58 -51.93 -0.29 0.33 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.77 7.90 -51.93 -0.41 0.36 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.63 6.45 -51.93 -0.33 0.29 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.67 7.08 -51.93 -0.37 0.30 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.64 6.98 -51.93 -0.36 0.27 16 LS Contribution 302.76 15.07 4.56 4.56 Total: -1.00 -28.30 302.76 -7.43 -35.73 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.01 Total: 5.88 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -0.57 Total: -23.07 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.18 Total: -39.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.59 Total: 16.88 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.30 -7.43 -35.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397274189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.700 kcal (2) G-P(sol) polarization free energy of solvation -28.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds