Wall clock time and date at job start Mon Mar 30 2020 02:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47625 * 2 1 4 4 H 1.09005 * 109.46782 * 305.83747 * 3 2 1 5 5 C 1.50697 * 109.47533 * 185.83706 * 3 2 1 6 6 H 1.08003 * 119.99705 * 274.99704 * 5 3 2 7 7 C 1.37877 * 120.00266 * 95.00227 * 5 3 2 8 8 N 1.31510 * 120.00088 * 184.83264 * 7 5 3 9 9 Si 1.86798 * 119.99690 * 4.83092 * 7 5 3 10 10 H 1.48504 * 109.47231 * 84.86534 * 9 7 5 11 11 H 1.48504 * 109.46820 * 204.86250 * 9 7 5 12 12 H 1.48493 * 109.47386 * 324.86146 * 9 7 5 13 13 N 1.46900 * 109.46855 * 65.83291 * 3 2 1 14 14 C 1.46906 * 111.00297 * 275.00136 * 13 3 2 15 15 H 1.08999 * 115.55724 * 9.30122 * 14 13 3 16 16 C 1.52994 * 117.50089 * 223.60930 * 14 13 3 17 17 C 1.52998 * 60.03190 * 252.52540 * 16 14 13 18 18 C 1.52992 * 117.50003 * 107.48247 * 17 16 14 19 19 C 1.52998 * 117.49508 * 252.47600 * 17 16 14 20 20 C 1.52999 * 109.47190 * 248.60795 * 19 17 16 21 21 C 1.53006 * 109.47364 * 8.61060 * 19 17 16 22 22 H 1.09001 * 109.46962 * 59.99770 * 1 2 3 23 23 H 1.09001 * 109.47171 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47052 * 299.99756 * 1 2 3 25 25 H 1.09007 * 109.47040 * 239.99490 * 2 1 3 26 26 H 1.09001 * 109.46962 * 120.00230 * 2 1 3 27 27 H 0.96997 * 120.00420 * 180.02562 * 8 7 5 28 28 H 1.00905 * 111.00070 * 151.04968 * 13 3 2 29 29 H 1.09003 * 117.50020 * 145.01658 * 16 14 13 30 30 H 1.09005 * 117.50041 * 0.02782 * 16 14 13 31 31 H 1.08999 * 109.47584 * 111.39215 * 18 17 16 32 32 H 1.09002 * 109.47216 * 231.38633 * 18 17 16 33 33 H 1.08998 * 109.47659 * 351.38697 * 18 17 16 34 34 H 1.09000 * 109.46976 * 128.60869 * 19 17 16 35 35 H 1.09002 * 109.47245 * 180.02562 * 20 19 17 36 36 H 1.08998 * 109.47075 * 299.99944 * 20 19 17 37 37 H 1.09000 * 109.47101 * 60.00150 * 20 19 17 38 38 H 1.08993 * 109.47228 * 60.00000 * 21 19 17 39 39 H 1.09002 * 109.47047 * 179.97438 * 21 19 17 40 40 H 1.09000 * 109.46917 * 299.99844 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5939 1.9855 -0.8332 5 6 3.5401 1.4448 -0.1445 6 1 4.1668 1.3327 0.7280 7 6 4.1125 1.5903 -1.3904 8 7 5.4169 1.4974 -1.5296 9 14 3.0351 1.9193 -2.8804 10 1 2.7685 3.3764 -2.9866 11 1 3.7306 1.4528 -4.1068 12 1 1.7499 1.1904 -2.7327 13 7 1.6688 2.0930 1.2636 14 6 0.3075 2.6410 1.1936 15 1 -0.2689 2.3572 0.3130 16 6 0.0793 4.0412 1.7663 17 6 -0.4528 2.8150 2.5106 18 6 0.2631 2.4050 3.7991 19 6 -1.9642 2.5778 2.4914 20 6 -2.5332 2.8001 3.8941 21 6 -2.6213 3.5542 1.5138 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 5.8197 1.6001 -2.4060 28 1 2.3347 2.8097 1.5107 29 1 -0.6473 4.6788 1.2625 30 1 0.9393 4.5561 2.1947 31 1 -0.3925 2.5827 4.6515 32 1 0.5185 1.3464 3.7518 33 1 1.1735 2.9936 3.9120 34 1 -2.1673 1.5548 2.1748 35 1 -3.6099 2.6306 3.8805 36 1 -2.0651 2.1044 4.5905 37 1 -2.3300 3.8231 4.2107 38 1 -2.2160 3.3958 0.5145 39 1 -3.6980 3.3849 1.4998 40 1 -2.4181 4.5772 1.8304 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397274189.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:19 Heat of formation + Delta-G solvation = -11.997223 kcal Electronic energy + Delta-G solvation = -16579.043752 eV Core-core repulsion = 14200.098879 eV Total energy + Delta-G solvation = -2378.944872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36610 -37.42412 -34.56100 -33.76656 -31.42548 -30.06857 -28.65505 -26.87632 -24.55132 -23.81585 -21.92665 -21.31928 -19.27991 -18.67746 -17.34598 -16.46420 -15.97156 -15.60054 -15.29363 -14.75986 -14.37252 -13.96787 -13.94818 -13.75571 -13.63015 -13.45149 -13.20789 -12.88442 -12.72441 -12.48067 -12.31661 -12.19900 -11.87362 -11.81102 -11.75741 -11.52414 -11.41007 -11.13872 -10.91201 -10.75297 -10.27941 -8.77162 -8.33206 -6.38015 1.29214 1.31558 1.42275 2.29746 2.90561 3.05483 3.46729 3.96458 4.03353 4.14469 4.14982 4.33706 4.46703 4.49672 4.56914 4.60680 4.75810 4.84276 4.86452 4.86987 5.00390 5.07167 5.08262 5.13785 5.15453 5.20234 5.27057 5.31457 5.34241 5.41280 5.50967 5.53249 5.57391 5.69289 5.77738 6.08777 6.56254 6.71576 6.86159 7.31647 8.83559 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036162 B = 0.007517 C = 0.007335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.105048 B = 3723.988468 C = 3816.619018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 C 0.195 3.805 4 H 0.002 0.998 5 C -0.522 4.522 6 H 0.036 0.964 7 C 0.018 3.982 8 N -0.944 5.944 9 Si 0.938 3.062 10 H -0.269 1.269 11 H -0.285 1.285 12 H -0.248 1.248 13 N -0.649 5.649 14 C 0.016 3.984 15 H 0.100 0.900 16 C -0.205 4.205 17 C -0.103 4.103 18 C -0.103 4.103 19 C -0.058 4.058 20 C -0.141 4.141 21 C -0.147 4.147 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.047 0.953 27 H 0.266 0.734 28 H 0.333 0.667 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.041 0.959 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.739 3.624 6.592 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C 0.086 3.914 4 H 0.020 0.980 5 C -0.560 4.560 6 H 0.054 0.946 7 C -0.180 4.180 8 N -0.584 5.584 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.171 1.171 13 N -0.278 5.278 14 C -0.094 4.094 15 H 0.118 0.882 16 C -0.244 4.244 17 C -0.104 4.104 18 C -0.160 4.160 19 C -0.077 4.077 20 C -0.198 4.198 21 C -0.204 4.204 22 H 0.060 0.940 23 H 0.075 0.925 24 H 0.089 0.911 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.152 0.848 29 H 0.126 0.874 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.764 3.023 6.759 19.245 hybrid contribution 0.746 0.824 -1.445 1.823 sum -17.018 3.847 5.314 18.239 Atomic orbital electron populations 1.21943 0.95525 1.01412 1.01454 1.21544 0.95387 0.97642 0.99580 1.19422 0.92635 0.92251 0.87107 0.98003 1.21319 0.91563 1.49463 0.93659 0.94603 1.25846 0.95968 0.94349 1.01861 1.70044 1.11879 1.51539 1.24914 0.85871 0.79958 0.79296 0.78648 1.19462 1.21145 1.17126 1.60305 1.01287 1.33000 1.33234 1.22821 0.92281 0.97213 0.97130 0.88250 1.23855 1.03538 0.91574 1.05405 1.21870 0.94593 1.00567 0.93409 1.21216 0.98914 1.00747 0.95158 1.20588 0.90675 0.99506 0.96923 1.21848 1.00637 1.01902 0.95373 1.21940 1.00567 0.99466 0.98424 0.94028 0.92468 0.91100 0.94675 0.93449 0.92449 0.84790 0.87443 0.89768 0.90641 0.93392 0.93981 0.91549 0.91782 0.92165 0.92496 0.93671 0.91531 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 8.60 71.98 0.62 -4.35 16 2 C -0.10 -4.41 5.59 30.59 0.17 -4.24 16 3 C 0.19 9.08 1.84 44.17 0.08 9.16 16 4 H 0.00 0.11 4.89 -2.38 -0.01 0.10 16 5 C -0.52 -29.73 8.84 25.60 0.23 -29.51 16 6 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 7 C 0.02 1.04 5.47 84.66 0.46 1.51 16 8 N -0.94 -58.86 13.96 21.45 0.30 -58.56 16 9 Si 0.94 44.37 26.99 68.60 1.85 46.23 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 12 H -0.25 -10.96 6.82 99.48 0.68 -10.28 16 13 N -0.65 -26.36 5.92 -473.20 -2.80 -29.16 16 14 C 0.02 0.54 3.46 44.94 0.16 0.70 16 15 H 0.10 3.33 5.56 -2.39 -0.01 3.32 16 16 C -0.21 -5.71 8.91 30.59 0.27 -5.44 16 17 C -0.10 -2.73 2.46 -52.16 -0.13 -2.86 16 18 C -0.10 -2.76 8.95 71.98 0.64 -2.12 16 19 C -0.06 -1.25 3.15 -10.79 -0.03 -1.28 16 20 C -0.14 -2.45 8.20 71.98 0.59 -1.86 16 21 C -0.15 -2.83 7.79 71.98 0.56 -2.27 16 22 H 0.04 1.36 7.96 -2.39 -0.02 1.34 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.07 2.31 5.75 -2.39 -0.01 2.30 16 25 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 28 H 0.33 14.24 8.14 -89.69 -0.73 13.51 16 29 H 0.11 2.63 5.85 -2.39 -0.01 2.62 16 30 H 0.08 2.43 7.99 -2.38 -0.02 2.42 16 31 H 0.07 1.64 5.58 -2.39 -0.01 1.63 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.20 7.90 -2.39 -0.02 1.18 16 34 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.06 1.05 6.45 -2.39 -0.02 1.03 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.04 0.96 7.08 -2.39 -0.02 0.94 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.06 1.14 6.98 -2.39 -0.02 1.12 16 Total: -1.00 -62.11 302.76 3.21 -58.90 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.24 Total: 25.18 kcal Atomic # 6 Polarization: -46.19 SS G_CDS: 3.62 Total: -42.57 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -2.50 Total: -87.73 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.85 Total: 46.23 kcal Total: -62.11 3.21 -58.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397274189.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.898 kcal (2) G-P(sol) polarization free energy of solvation -62.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds