Wall clock time and date at job start Mon Mar 30 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 112.74447 * 2 1 4 4 C 1.53512 * 113.47387 * 130.84945 * 2 1 3 5 5 C 1.53514 * 83.57391 * 88.74355 * 4 2 1 6 6 C 1.52999 * 113.47533 * 271.25383 * 5 4 2 7 7 C 1.53000 * 113.47657 * 140.79411 * 5 4 2 8 8 N 1.47481 * 113.47580 * 229.23143 * 2 1 3 9 9 C 1.46900 * 110.99920 * 23.93690 * 8 2 1 10 10 C 1.52996 * 109.47124 * 71.17064 * 9 8 2 11 11 C 1.52998 * 109.46981 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47192 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47344 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99930 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99841 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00111 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46860 * 89.99989 * 17 15 13 19 19 H 1.48501 * 109.46947 * 210.00160 * 17 15 13 20 20 H 1.48499 * 109.47185 * 330.00022 * 17 15 13 21 21 H 1.08999 * 109.47255 * 215.02937 * 1 2 3 22 22 H 1.09000 * 109.47039 * 335.03327 * 1 2 3 23 23 H 1.09001 * 109.46831 * 95.03421 * 1 2 3 24 24 H 1.09002 * 114.16867 * 202.38583 * 4 2 1 25 25 H 1.08995 * 114.17378 * 335.09526 * 4 2 1 26 26 H 1.08997 * 109.47230 * 182.09606 * 6 5 4 27 27 H 1.09003 * 109.47408 * 302.09888 * 6 5 4 28 28 H 1.09009 * 109.47004 * 62.09972 * 6 5 4 29 29 H 1.09006 * 109.46701 * 321.60989 * 7 5 4 30 30 H 1.08989 * 109.47822 * 81.61566 * 7 5 4 31 31 H 1.09007 * 109.46745 * 201.61948 * 7 5 4 32 32 H 1.08998 * 109.46733 * 191.17107 * 9 8 2 33 33 H 1.09001 * 109.47136 * 311.16774 * 9 8 2 34 34 H 1.09001 * 109.46876 * 299.99845 * 10 9 8 35 35 H 1.09001 * 109.47351 * 59.99841 * 10 9 8 36 36 H 1.09001 * 109.47288 * 299.99714 * 11 10 9 37 37 H 1.08998 * 109.47594 * 59.99976 * 11 10 9 38 38 H 1.09001 * 109.46664 * 299.99965 * 12 11 10 39 39 H 1.08998 * 109.46977 * 59.99467 * 12 11 10 40 40 H 0.96998 * 119.99726 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9515 1.0052 0.0000 4 6 2.1415 -0.9210 1.0651 5 6 2.0424 -1.9803 -0.0416 6 6 0.7044 -2.7221 -0.0571 7 6 3.2445 -2.9255 -0.0899 8 7 2.1176 -0.8833 -1.0245 9 6 1.1775 -1.1033 -2.1317 10 6 1.0463 0.1814 -2.9521 11 6 0.0677 -0.0479 -4.1057 12 6 -0.0631 1.2367 -4.9265 13 6 -1.0275 1.0110 -6.0624 14 1 -1.4995 0.0476 -6.1867 15 6 -1.3071 2.0345 -6.9429 16 7 -2.1483 1.8374 -7.9345 17 14 -0.4912 3.7010 -6.7275 18 1 0.7845 3.7294 -7.4871 19 1 -1.3946 4.7639 -7.2369 20 1 -0.2150 3.9345 -5.2872 21 1 -0.3634 -0.8415 0.5899 22 1 -0.3633 0.9316 0.4338 23 1 -0.3633 -0.0902 -1.0237 24 1 3.1627 -0.6627 1.3454 25 1 1.4921 -1.1070 1.9204 26 1 0.7184 -3.4804 -0.8400 27 1 0.5427 -3.2002 0.9090 28 1 -0.1013 -2.0141 -0.2515 29 1 4.1563 -2.3646 0.1156 30 1 3.1223 -3.7075 0.6593 31 1 3.3115 -3.3777 -1.0795 32 1 1.5488 -1.9054 -2.7696 33 1 0.2023 -1.3797 -1.7309 34 1 0.6750 0.9835 -2.3142 35 1 2.0215 0.4579 -3.3529 36 1 0.4394 -0.8499 -4.7435 37 1 -0.9076 -0.3246 -3.7053 38 1 -0.4346 2.0389 -4.2889 39 1 0.9123 1.5129 -5.3269 40 1 -2.3453 2.5575 -8.5537 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687776894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:38 Heat of formation + Delta-G solvation = 31.890220 kcal Electronic energy + Delta-G solvation = -16122.667997 eV Core-core repulsion = 13745.626227 eV Total energy + Delta-G solvation = -2377.041770 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.47802 -35.17233 -32.76069 -31.69985 -30.51101 -29.30790 -27.57316 -26.58788 -23.88716 -21.57914 -20.74464 -19.95622 -17.87374 -16.64544 -16.46433 -15.69880 -15.44534 -14.77592 -14.14703 -13.55864 -13.17675 -12.82001 -12.68605 -12.49632 -12.36131 -12.05043 -11.87913 -11.84640 -11.62195 -11.25071 -11.10949 -10.99653 -10.83777 -10.52997 -10.44801 -9.86856 -9.84714 -9.63822 -9.40412 -9.11313 -8.69903 -8.49847 -6.00769 -3.98160 3.33861 3.40710 3.45522 3.92751 4.30219 4.49028 4.65974 4.87360 4.96676 5.06487 5.18078 5.29927 5.33155 5.37319 5.42395 5.56941 5.61835 5.68294 5.73935 5.76580 5.78821 5.85133 5.96967 6.02833 6.07634 6.15237 6.24261 6.28497 6.37577 6.62146 6.71686 6.82475 6.97536 7.23341 7.37834 7.50660 7.84708 8.58734 9.04571 9.62491 11.12915 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048061 B = 0.005146 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.459086 B = 5439.387442 C = 5586.353679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.025 3.975 3 H 0.090 0.910 4 C -0.136 4.136 5 C 0.048 3.952 6 C -0.179 4.179 7 C -0.125 4.125 8 N -0.460 5.460 9 C 0.006 3.994 10 C -0.117 4.117 11 C -0.101 4.101 12 C -0.014 4.014 13 C -0.519 4.519 14 H 0.070 0.930 15 C 0.065 3.935 16 N -0.906 5.906 17 Si 0.880 3.120 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.266 1.266 21 H 0.070 0.930 22 H 0.061 0.939 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.014 0.986 39 H 0.010 0.990 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.923 -6.856 19.074 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.084 4.084 3 H 0.108 0.892 4 C -0.174 4.174 5 C -0.042 4.042 6 C -0.237 4.237 7 C -0.183 4.183 8 N -0.182 5.182 9 C -0.122 4.122 10 C -0.155 4.155 11 C -0.139 4.139 12 C -0.051 4.051 13 C -0.557 4.557 14 H 0.089 0.911 15 C -0.136 4.136 16 N -0.545 5.545 17 Si 0.708 3.292 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 H 0.088 0.912 22 H 0.080 0.920 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.475 -6.603 18.550 21.436 hybrid contribution -0.440 0.701 0.128 0.837 sum 8.035 -5.902 18.678 21.172 Atomic orbital electron populations 1.22669 0.95232 1.02521 1.04276 1.23058 0.94024 0.98789 0.92543 0.89208 1.23428 1.01688 0.96259 0.96016 1.22610 0.95565 0.92888 0.93161 1.22577 0.97375 1.01357 1.02352 1.21592 0.96840 0.98245 1.01611 1.69248 1.40064 1.05660 1.03220 1.22890 0.95913 0.99617 0.93764 1.21687 1.00665 0.95848 0.97298 1.21420 0.97178 1.00000 0.95294 1.19567 0.96585 0.93528 0.95440 1.21192 1.24930 0.99746 1.09841 0.91144 1.25043 0.94838 0.98786 0.94922 1.69924 1.35406 1.33075 1.16139 0.86766 0.79439 0.84072 0.78945 1.20304 1.21445 1.19034 0.91189 0.91973 0.89584 0.89268 0.90941 0.92000 0.91990 0.89560 0.92121 0.92596 0.92531 0.90996 0.92280 0.92467 0.91934 0.92907 0.93141 0.96815 0.97130 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 7.68 37.16 0.29 -1.81 16 2 C 0.03 0.29 4.14 -71.43 -0.30 0.00 16 3 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 4 C -0.14 -1.34 7.15 -26.20 -0.19 -1.52 16 5 C 0.05 0.52 1.36 -135.32 -0.18 0.33 16 6 C -0.18 -1.77 7.13 37.16 0.26 -1.51 16 7 C -0.13 -1.24 9.46 37.16 0.35 -0.89 16 8 N -0.46 -6.04 6.22 -220.57 -1.37 -7.42 16 9 C 0.01 0.09 4.01 -3.83 -0.02 0.07 16 10 C -0.12 -1.97 4.79 -26.73 -0.13 -2.10 16 11 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 13 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 14 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 15 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 16 N -0.91 -28.54 13.96 55.43 0.77 -27.76 16 17 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 21 H 0.07 0.68 5.35 -51.93 -0.28 0.40 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.09 1.10 4.31 -51.93 -0.22 0.88 16 24 H 0.09 0.84 8.00 -51.93 -0.42 0.42 16 25 H 0.07 0.62 7.97 -51.93 -0.41 0.20 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.89 3.10 -51.92 -0.16 0.73 16 29 H 0.06 0.60 7.97 -51.93 -0.41 0.18 16 30 H 0.06 0.46 8.14 -51.94 -0.42 0.04 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.80 3.72 -51.93 -0.19 0.60 16 34 H 0.06 0.95 6.55 -51.93 -0.34 0.61 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 39 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -30.90 297.90 -8.39 -39.29 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: -7.02 Total: -2.47 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: -0.59 Total: -23.78 kcal Atomic # 7 Polarization: -34.58 SS G_CDS: -0.60 Total: -35.18 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -30.90 -8.39 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.178 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds