Wall clock time and date at job start Mon Mar 30 2020 03:44:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 H 1.08999 * 112.74447 * 2 1
4 4 C 1.53512 * 113.47387 * 130.84945 * 2 1 3
5 5 C 1.53514 * 83.57391 * 88.74355 * 4 2 1
6 6 C 1.52999 * 113.47533 * 271.25383 * 5 4 2
7 7 C 1.53000 * 113.47657 * 140.79411 * 5 4 2
8 8 N 1.47481 * 113.47580 * 229.23143 * 2 1 3
9 9 C 1.46900 * 110.99920 * 23.93690 * 8 2 1
10 10 C 1.52996 * 109.47124 * 71.17064 * 9 8 2
11 11 C 1.52998 * 109.46981 * 179.97438 * 10 9 8
12 12 C 1.53004 * 109.47192 * 180.02562 * 11 10 9
13 13 C 1.50702 * 109.47344 * 180.02562 * 12 11 10
14 14 H 1.07996 * 119.99877 * 359.97438 * 13 12 11
15 15 C 1.37876 * 119.99930 * 179.97438 * 13 12 11
16 16 N 1.31517 * 119.99841 * 179.97438 * 15 13 12
17 17 Si 1.86800 * 120.00111 * 359.97438 * 15 13 12
18 18 H 1.48500 * 109.46860 * 89.99989 * 17 15 13
19 19 H 1.48501 * 109.46947 * 210.00160 * 17 15 13
20 20 H 1.48499 * 109.47185 * 330.00022 * 17 15 13
21 21 H 1.08999 * 109.47255 * 215.02937 * 1 2 3
22 22 H 1.09000 * 109.47039 * 335.03327 * 1 2 3
23 23 H 1.09001 * 109.46831 * 95.03421 * 1 2 3
24 24 H 1.09002 * 114.16867 * 202.38583 * 4 2 1
25 25 H 1.08995 * 114.17378 * 335.09526 * 4 2 1
26 26 H 1.08997 * 109.47230 * 182.09606 * 6 5 4
27 27 H 1.09003 * 109.47408 * 302.09888 * 6 5 4
28 28 H 1.09009 * 109.47004 * 62.09972 * 6 5 4
29 29 H 1.09006 * 109.46701 * 321.60989 * 7 5 4
30 30 H 1.08989 * 109.47822 * 81.61566 * 7 5 4
31 31 H 1.09007 * 109.46745 * 201.61948 * 7 5 4
32 32 H 1.08998 * 109.46733 * 191.17107 * 9 8 2
33 33 H 1.09001 * 109.47136 * 311.16774 * 9 8 2
34 34 H 1.09001 * 109.46876 * 299.99845 * 10 9 8
35 35 H 1.09001 * 109.47351 * 59.99841 * 10 9 8
36 36 H 1.09001 * 109.47288 * 299.99714 * 11 10 9
37 37 H 1.08998 * 109.47594 * 59.99976 * 11 10 9
38 38 H 1.09001 * 109.46664 * 299.99965 * 12 11 10
39 39 H 1.08998 * 109.46977 * 59.99467 * 12 11 10
40 40 H 0.96998 * 119.99726 * 179.97438 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.9515 1.0052 0.0000
4 6 2.1415 -0.9210 1.0651
5 6 2.0424 -1.9803 -0.0416
6 6 0.7044 -2.7221 -0.0571
7 6 3.2445 -2.9255 -0.0899
8 7 2.1176 -0.8833 -1.0245
9 6 1.1775 -1.1033 -2.1317
10 6 1.0463 0.1814 -2.9521
11 6 0.0677 -0.0479 -4.1057
12 6 -0.0631 1.2367 -4.9265
13 6 -1.0275 1.0110 -6.0624
14 1 -1.4995 0.0476 -6.1867
15 6 -1.3071 2.0345 -6.9429
16 7 -2.1483 1.8374 -7.9345
17 14 -0.4912 3.7010 -6.7275
18 1 0.7845 3.7294 -7.4871
19 1 -1.3946 4.7639 -7.2369
20 1 -0.2150 3.9345 -5.2872
21 1 -0.3634 -0.8415 0.5899
22 1 -0.3633 0.9316 0.4338
23 1 -0.3633 -0.0902 -1.0237
24 1 3.1627 -0.6627 1.3454
25 1 1.4921 -1.1070 1.9204
26 1 0.7184 -3.4804 -0.8400
27 1 0.5427 -3.2002 0.9090
28 1 -0.1013 -2.0141 -0.2515
29 1 4.1563 -2.3646 0.1156
30 1 3.1223 -3.7075 0.6593
31 1 3.3115 -3.3777 -1.0795
32 1 1.5488 -1.9054 -2.7696
33 1 0.2023 -1.3797 -1.7309
34 1 0.6750 0.9835 -2.3142
35 1 2.0215 0.4579 -3.3529
36 1 0.4394 -0.8499 -4.7435
37 1 -0.9076 -0.3246 -3.7053
38 1 -0.4346 2.0389 -4.2889
39 1 0.9123 1.5129 -5.3269
40 1 -2.3453 2.5575 -8.5537
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000687776894.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:44:38
Heat of formation + Delta-G solvation = 31.890220 kcal
Electronic energy + Delta-G solvation = -16122.667997 eV
Core-core repulsion = 13745.626227 eV
Total energy + Delta-G solvation = -2377.041770 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-41.47802 -35.17233 -32.76069 -31.69985 -30.51101 -29.30790 -27.57316 -26.58788
-23.88716 -21.57914 -20.74464 -19.95622 -17.87374 -16.64544 -16.46433 -15.69880
-15.44534 -14.77592 -14.14703 -13.55864 -13.17675 -12.82001 -12.68605 -12.49632
-12.36131 -12.05043 -11.87913 -11.84640 -11.62195 -11.25071 -11.10949 -10.99653
-10.83777 -10.52997 -10.44801 -9.86856 -9.84714 -9.63822 -9.40412 -9.11313
-8.69903 -8.49847 -6.00769 -3.98160 3.33861 3.40710 3.45522 3.92751
4.30219 4.49028 4.65974 4.87360 4.96676 5.06487 5.18078 5.29927
5.33155 5.37319 5.42395 5.56941 5.61835 5.68294 5.73935 5.76580
5.78821 5.85133 5.96967 6.02833 6.07634 6.15237 6.24261 6.28497
6.37577 6.62146 6.71686 6.82475 6.97536 7.23341 7.37834 7.50660
7.84708 8.58734 9.04571 9.62491 11.12915
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.048061 B = 0.005146 C = 0.005011
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 582.459086 B = 5439.387442 C = 5586.353679
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.190 4.190
2 C 0.025 3.975
3 H 0.090 0.910
4 C -0.136 4.136
5 C 0.048 3.952
6 C -0.179 4.179
7 C -0.125 4.125
8 N -0.460 5.460
9 C 0.006 3.994
10 C -0.117 4.117
11 C -0.101 4.101
12 C -0.014 4.014
13 C -0.519 4.519
14 H 0.070 0.930
15 C 0.065 3.935
16 N -0.906 5.906
17 Si 0.880 3.120
18 H -0.277 1.277
19 H -0.288 1.288
20 H -0.266 1.266
21 H 0.070 0.930
22 H 0.061 0.939
23 H 0.086 0.914
24 H 0.089 0.911
25 H 0.072 0.928
26 H 0.061 0.939
27 H 0.061 0.939
28 H 0.086 0.914
29 H 0.060 0.940
30 H 0.055 0.945
31 H 0.056 0.944
32 H 0.072 0.928
33 H 0.059 0.941
34 H 0.057 0.943
35 H 0.062 0.938
36 H 0.052 0.948
37 H 0.050 0.950
38 H 0.014 0.986
39 H 0.010 0.990
40 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.923 -6.856 19.074 21.762
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.247 4.247
2 C -0.084 4.084
3 H 0.108 0.892
4 C -0.174 4.174
5 C -0.042 4.042
6 C -0.237 4.237
7 C -0.183 4.183
8 N -0.182 5.182
9 C -0.122 4.122
10 C -0.155 4.155
11 C -0.139 4.139
12 C -0.051 4.051
13 C -0.557 4.557
14 H 0.089 0.911
15 C -0.136 4.136
16 N -0.545 5.545
17 Si 0.708 3.292
18 H -0.203 1.203
19 H -0.214 1.214
20 H -0.190 1.190
21 H 0.088 0.912
22 H 0.080 0.920
23 H 0.104 0.896
24 H 0.107 0.893
25 H 0.091 0.909
26 H 0.080 0.920
27 H 0.080 0.920
28 H 0.104 0.896
29 H 0.079 0.921
30 H 0.074 0.926
31 H 0.075 0.925
32 H 0.090 0.910
33 H 0.077 0.923
34 H 0.075 0.925
35 H 0.081 0.919
36 H 0.071 0.929
37 H 0.069 0.931
38 H 0.032 0.968
39 H 0.029 0.971
40 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 8.475 -6.603 18.550 21.436
hybrid contribution -0.440 0.701 0.128 0.837
sum 8.035 -5.902 18.678 21.172
Atomic orbital electron populations
1.22669 0.95232 1.02521 1.04276 1.23058 0.94024 0.98789 0.92543
0.89208 1.23428 1.01688 0.96259 0.96016 1.22610 0.95565 0.92888
0.93161 1.22577 0.97375 1.01357 1.02352 1.21592 0.96840 0.98245
1.01611 1.69248 1.40064 1.05660 1.03220 1.22890 0.95913 0.99617
0.93764 1.21687 1.00665 0.95848 0.97298 1.21420 0.97178 1.00000
0.95294 1.19567 0.96585 0.93528 0.95440 1.21192 1.24930 0.99746
1.09841 0.91144 1.25043 0.94838 0.98786 0.94922 1.69924 1.35406
1.33075 1.16139 0.86766 0.79439 0.84072 0.78945 1.20304 1.21445
1.19034 0.91189 0.91973 0.89584 0.89268 0.90941 0.92000 0.91990
0.89560 0.92121 0.92596 0.92531 0.90996 0.92280 0.92467 0.91934
0.92907 0.93141 0.96815 0.97130 0.92817
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -2.10 7.68 37.16 0.29 -1.81 16
2 C 0.03 0.29 4.14 -71.43 -0.30 0.00 16
3 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16
4 C -0.14 -1.34 7.15 -26.20 -0.19 -1.52 16
5 C 0.05 0.52 1.36 -135.32 -0.18 0.33 16
6 C -0.18 -1.77 7.13 37.16 0.26 -1.51 16
7 C -0.13 -1.24 9.46 37.16 0.35 -0.89 16
8 N -0.46 -6.04 6.22 -220.57 -1.37 -7.42 16
9 C 0.01 0.09 4.01 -3.83 -0.02 0.07 16
10 C -0.12 -1.97 4.79 -26.73 -0.13 -2.10 16
11 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16
12 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16
13 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16
14 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16
15 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16
16 N -0.91 -28.54 13.96 55.43 0.77 -27.76 16
17 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16
18 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16
19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16
20 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16
21 H 0.07 0.68 5.35 -51.93 -0.28 0.40 16
22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
23 H 0.09 1.10 4.31 -51.93 -0.22 0.88 16
24 H 0.09 0.84 8.00 -51.93 -0.42 0.42 16
25 H 0.07 0.62 7.97 -51.93 -0.41 0.20 16
26 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16
27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.09 0.89 3.10 -51.92 -0.16 0.73 16
29 H 0.06 0.60 7.97 -51.93 -0.41 0.18 16
30 H 0.06 0.46 8.14 -51.94 -0.42 0.04 16
31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16
32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16
33 H 0.06 0.80 3.72 -51.93 -0.19 0.60 16
34 H 0.06 0.95 6.55 -51.93 -0.34 0.61 16
35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
36 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16
37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16
38 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16
39 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16
40 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16
LS Contribution 297.90 15.07 4.49 4.49
Total: -1.00 -30.90 297.90 -8.39 -39.29
By element:
Atomic # 1 Polarization: 4.55 SS G_CDS: -7.02 Total: -2.47 kcal
Atomic # 6 Polarization: -23.19 SS G_CDS: -0.59 Total: -23.78 kcal
Atomic # 7 Polarization: -34.58 SS G_CDS: -0.60 Total: -35.18 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal
Total LS contribution 4.49 Total: 4.49 kcal
Total: -30.90 -8.39 -39.29 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000687776894.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.178 kcal
(2) G-P(sol) polarization free energy of solvation -30.899 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.279 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.890 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds