Wall clock time and date at job start Mon Mar 30 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 112.74447 * 2 1 4 4 C 1.53512 * 113.47387 * 130.84945 * 2 1 3 5 5 C 1.53514 * 83.57391 * 88.74355 * 4 2 1 6 6 C 1.52999 * 113.47533 * 271.25383 * 5 4 2 7 7 C 1.53000 * 113.47657 * 140.79411 * 5 4 2 8 8 N 1.47481 * 113.47580 * 229.23143 * 2 1 3 9 9 C 1.46900 * 110.99920 * 23.93690 * 8 2 1 10 10 C 1.52996 * 109.47124 * 71.17064 * 9 8 2 11 11 C 1.52998 * 109.46981 * 179.97438 * 10 9 8 12 12 C 1.53004 * 109.47192 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47344 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99877 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99930 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99841 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00111 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.46860 * 89.99989 * 17 15 13 19 19 H 1.48501 * 109.46947 * 210.00160 * 17 15 13 20 20 H 1.48499 * 109.47185 * 330.00022 * 17 15 13 21 21 H 1.08999 * 109.47255 * 215.02937 * 1 2 3 22 22 H 1.09000 * 109.47039 * 335.03327 * 1 2 3 23 23 H 1.09001 * 109.46831 * 95.03421 * 1 2 3 24 24 H 1.09002 * 114.16867 * 202.38583 * 4 2 1 25 25 H 1.08995 * 114.17378 * 335.09526 * 4 2 1 26 26 H 1.08997 * 109.47230 * 182.09606 * 6 5 4 27 27 H 1.09003 * 109.47408 * 302.09888 * 6 5 4 28 28 H 1.09009 * 109.47004 * 62.09972 * 6 5 4 29 29 H 1.09006 * 109.46701 * 321.60989 * 7 5 4 30 30 H 1.08989 * 109.47822 * 81.61566 * 7 5 4 31 31 H 1.09007 * 109.46745 * 201.61948 * 7 5 4 32 32 H 1.08998 * 109.46733 * 191.17107 * 9 8 2 33 33 H 1.09001 * 109.47136 * 311.16774 * 9 8 2 34 34 H 1.09001 * 109.46876 * 299.99845 * 10 9 8 35 35 H 1.09001 * 109.47351 * 59.99841 * 10 9 8 36 36 H 1.09001 * 109.47288 * 299.99714 * 11 10 9 37 37 H 1.08998 * 109.47594 * 59.99976 * 11 10 9 38 38 H 1.09001 * 109.46664 * 299.99965 * 12 11 10 39 39 H 1.08998 * 109.46977 * 59.99467 * 12 11 10 40 40 H 0.96998 * 119.99726 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9515 1.0052 0.0000 4 6 2.1415 -0.9210 1.0651 5 6 2.0424 -1.9803 -0.0416 6 6 0.7044 -2.7221 -0.0571 7 6 3.2445 -2.9255 -0.0899 8 7 2.1176 -0.8833 -1.0245 9 6 1.1775 -1.1033 -2.1317 10 6 1.0463 0.1814 -2.9521 11 6 0.0677 -0.0479 -4.1057 12 6 -0.0631 1.2367 -4.9265 13 6 -1.0275 1.0110 -6.0624 14 1 -1.4995 0.0476 -6.1867 15 6 -1.3071 2.0345 -6.9429 16 7 -2.1483 1.8374 -7.9345 17 14 -0.4912 3.7010 -6.7275 18 1 0.7845 3.7294 -7.4871 19 1 -1.3946 4.7639 -7.2369 20 1 -0.2150 3.9345 -5.2872 21 1 -0.3634 -0.8415 0.5899 22 1 -0.3633 0.9316 0.4338 23 1 -0.3633 -0.0902 -1.0237 24 1 3.1627 -0.6627 1.3454 25 1 1.4921 -1.1070 1.9204 26 1 0.7184 -3.4804 -0.8400 27 1 0.5427 -3.2002 0.9090 28 1 -0.1013 -2.0141 -0.2515 29 1 4.1563 -2.3646 0.1156 30 1 3.1223 -3.7075 0.6593 31 1 3.3115 -3.3777 -1.0795 32 1 1.5488 -1.9054 -2.7696 33 1 0.2023 -1.3797 -1.7309 34 1 0.6750 0.9835 -2.3142 35 1 2.0215 0.4579 -3.3529 36 1 0.4394 -0.8499 -4.7435 37 1 -0.9076 -0.3246 -3.7053 38 1 -0.4346 2.0389 -4.2889 39 1 0.9123 1.5129 -5.3269 40 1 -2.3453 2.5575 -8.5537 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687776894.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:38 Heat of formation + Delta-G solvation = 11.791135 kcal Electronic energy + Delta-G solvation = -16123.539559 eV Core-core repulsion = 13745.626227 eV Total energy + Delta-G solvation = -2377.913332 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.37577 -36.79255 -34.70150 -32.82955 -31.89806 -30.19742 -28.97716 -27.51907 -25.48536 -22.80699 -22.07893 -21.45136 -18.87245 -18.76112 -17.47144 -16.70817 -16.41561 -16.31998 -15.78448 -14.96627 -14.79992 -14.05247 -13.79027 -13.61369 -13.51874 -13.38831 -13.10333 -13.00144 -12.71384 -12.52449 -12.40601 -12.21291 -12.01004 -11.83604 -11.77440 -11.58457 -11.39157 -11.32410 -11.00837 -10.77832 -10.69337 -9.65398 -8.31090 -6.35120 1.34407 1.35801 1.48488 2.35032 3.01975 3.04219 3.47945 3.82577 3.89296 4.08170 4.16354 4.22234 4.28720 4.37384 4.50146 4.53299 4.58154 4.72912 4.80568 4.84061 4.87041 4.91300 4.97776 5.01979 5.04067 5.06205 5.15651 5.17864 5.25302 5.31733 5.33473 5.46600 5.56785 5.60430 5.65701 5.69770 6.25182 6.28267 6.72767 7.29789 8.85944 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.048061 B = 0.005146 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.459086 B = 5439.387442 C = 5586.353679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.019 3.981 3 H 0.083 0.917 4 C -0.123 4.123 5 C 0.045 3.955 6 C -0.178 4.178 7 C -0.124 4.124 8 N -0.479 5.479 9 C 0.015 3.985 10 C -0.104 4.104 11 C -0.093 4.093 12 C -0.012 4.012 13 C -0.534 4.534 14 H 0.031 0.969 15 C 0.003 3.997 16 N -0.952 5.952 17 Si 0.952 3.048 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.248 1.248 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.018 0.982 39 H 0.014 0.986 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.020 -6.267 21.336 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.091 4.091 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.045 4.045 6 C -0.236 4.236 7 C -0.182 4.182 8 N -0.202 5.202 9 C -0.113 4.113 10 C -0.142 4.142 11 C -0.131 4.131 12 C -0.049 4.049 13 C -0.572 4.572 14 H 0.049 0.951 15 C -0.193 4.193 16 N -0.593 5.593 17 Si 0.775 3.225 18 H -0.192 1.192 19 H -0.207 1.207 20 H -0.172 1.172 21 H 0.103 0.897 22 H 0.087 0.913 23 H 0.085 0.915 24 H 0.112 0.888 25 H 0.109 0.891 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.579 -6.029 20.829 23.705 hybrid contribution -0.821 0.434 -0.597 1.104 sum 8.758 -5.596 20.231 22.745 Atomic orbital electron populations 1.22631 0.94814 1.03592 1.03337 1.23148 0.94403 0.98622 0.92887 0.89881 1.23394 1.02202 0.94606 0.95882 1.22742 0.96318 0.92837 0.92637 1.22566 0.96625 1.01070 1.03290 1.21599 0.96476 0.98525 1.01578 1.69242 1.39860 1.07442 1.03630 1.22711 0.96890 0.97683 0.94046 1.21495 0.98951 0.97492 0.96234 1.21283 0.98257 0.97628 0.95939 1.19532 0.95212 0.95755 0.94397 1.21545 1.25699 0.98341 1.11658 0.95090 1.26041 0.95442 1.03458 0.94385 1.70074 1.37144 1.34760 1.17335 0.85631 0.78549 0.78356 0.79956 1.19204 1.20673 1.17165 0.89665 0.91341 0.91528 0.88787 0.89056 0.92612 0.90031 0.90033 0.92241 0.90748 0.93665 0.91846 0.91381 0.92030 0.92678 0.93673 0.93245 0.96351 0.96781 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.73 7.68 71.98 0.55 -3.18 16 2 C 0.02 0.40 4.14 42.19 0.17 0.57 16 3 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.12 -2.05 7.15 30.94 0.22 -1.83 16 5 C 0.04 0.86 1.36 0.80 0.00 0.86 16 6 C -0.18 -3.10 7.13 71.98 0.51 -2.59 16 7 C -0.12 -2.20 9.46 71.98 0.68 -1.52 16 8 N -0.48 -11.85 6.22 -851.74 -5.30 -17.15 16 9 C 0.01 0.41 4.01 86.30 0.35 0.76 16 10 C -0.10 -3.41 4.79 30.59 0.15 -3.26 16 11 C -0.09 -3.76 5.15 30.59 0.16 -3.60 16 12 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 13 C -0.53 -32.02 9.66 25.60 0.25 -31.77 16 14 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 15 C 0.00 0.20 5.47 84.65 0.46 0.66 16 16 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 17 Si 0.95 45.61 27.47 68.60 1.88 47.49 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 H -0.25 -11.10 6.54 99.48 0.65 -10.45 16 21 H 0.08 1.43 5.35 -2.39 -0.01 1.41 16 22 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.61 4.31 -2.39 -0.01 1.60 16 24 H 0.09 1.49 8.00 -2.39 -0.02 1.47 16 25 H 0.09 1.20 7.97 -2.39 -0.02 1.18 16 26 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.08 1.50 3.10 -2.38 -0.01 1.50 16 29 H 0.06 1.06 7.97 -2.38 -0.02 1.04 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.76 3.72 -2.39 -0.01 1.75 16 34 H 0.06 1.97 6.55 -2.39 -0.02 1.95 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 37 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 39 H 0.01 0.67 7.57 -2.39 -0.02 0.65 16 40 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -66.63 297.90 1.44 -65.20 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.93 Total: 10.70 kcal Atomic # 6 Polarization: -48.98 SS G_CDS: 3.62 Total: -45.35 kcal Atomic # 7 Polarization: -73.03 SS G_CDS: -5.00 Total: -78.03 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.49 kcal Total: -66.63 1.44 -65.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687776894.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.987 kcal (2) G-P(sol) polarization free energy of solvation -66.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds