Wall clock time and date at job start Mon Mar 30 2020 02:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46688 * 2 1 4 4 H 1.08999 * 109.47269 * 55.43981 * 3 2 1 5 5 C 1.50708 * 109.46711 * 175.43792 * 3 2 1 6 6 H 1.07998 * 119.99416 * 120.00571 * 5 3 2 7 7 C 1.37876 * 120.00202 * 299.99781 * 5 3 2 8 8 N 1.31517 * 119.99646 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00171 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47181 * 89.99850 * 9 7 5 11 11 H 1.48496 * 109.47127 * 210.00504 * 9 7 5 12 12 H 1.48502 * 109.46703 * 329.99922 * 9 7 5 13 13 N 1.46896 * 109.47058 * 295.43677 * 3 2 1 14 14 C 1.46901 * 110.99730 * 168.84979 * 13 3 2 15 15 C 1.46898 * 111.00154 * 292.79780 * 13 3 2 16 16 C 1.53005 * 109.46990 * 163.83081 * 15 13 3 17 17 C 1.53002 * 109.47107 * 180.02562 * 16 15 13 18 18 C 1.53782 * 113.61498 * 274.13722 * 17 16 15 19 19 C 1.53954 * 87.01976 * 220.04746 * 18 17 16 20 20 C 1.53773 * 113.61469 * 176.52938 * 17 16 15 21 21 H 1.09001 * 109.47207 * 55.52418 * 1 2 3 22 22 H 1.08999 * 109.46399 * 175.51516 * 1 2 3 23 23 H 1.08992 * 109.47394 * 295.51347 * 1 2 3 24 24 H 1.08998 * 109.47378 * 240.00477 * 2 1 3 25 25 H 1.08996 * 109.47604 * 119.99939 * 2 1 3 26 26 H 0.97002 * 119.99360 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.47318 * 60.00074 * 14 13 3 28 28 H 1.09004 * 109.47339 * 180.02562 * 14 13 3 29 29 H 1.08997 * 109.47347 * 299.99780 * 14 13 3 30 30 H 1.08998 * 109.47870 * 283.83190 * 15 13 3 31 31 H 1.09001 * 109.46985 * 43.83776 * 15 13 3 32 32 H 1.08994 * 109.47256 * 300.00393 * 16 15 13 33 33 H 1.09001 * 109.46689 * 60.00514 * 16 15 13 34 34 H 1.09006 * 112.84851 * 45.33286 * 17 16 15 35 35 H 1.09000 * 113.61385 * 334.56873 * 18 17 16 36 36 H 1.09007 * 113.61107 * 105.46979 * 18 17 16 37 37 H 1.09000 * 113.53491 * 270.81000 * 19 18 17 38 38 H 1.08992 * 113.66494 * 139.93124 * 19 18 17 39 39 H 1.09000 * 113.61631 * 254.53121 * 20 17 16 40 40 H 1.09005 * 113.61641 * 25.34721 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6114 1.9794 0.8463 5 6 3.5427 1.4441 0.1130 6 1 4.1423 1.8907 -0.6663 7 6 4.1521 0.8754 1.2113 8 7 3.4218 0.3312 2.1601 9 14 6.0148 0.8779 1.3518 10 1 6.4565 2.1091 2.0548 11 1 6.4550 -0.3151 2.1186 12 1 6.6135 0.8417 -0.0067 13 7 1.6422 2.1025 -1.2507 14 6 1.8783 3.5506 -1.1799 15 6 2.3375 1.5115 -2.4019 16 6 1.6264 1.9223 -3.6929 17 6 2.3501 1.3062 -4.8920 18 6 3.5287 2.1525 -5.4015 19 6 3.0709 1.7873 -6.8253 20 6 1.6634 1.5899 -6.2383 21 1 -0.3634 0.5817 -0.8472 22 1 -0.3632 -1.0246 -0.0804 23 1 -0.3634 0.4426 0.9274 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8505 -0.0685 2.9330 27 1 2.9382 3.7380 -1.0076 28 1 1.5749 4.0146 -2.1185 29 1 1.2967 3.9741 -0.3611 30 1 3.3677 1.8665 -2.4258 31 1 2.3295 0.4252 -2.3127 32 1 0.5962 1.5673 -3.6692 33 1 1.6344 3.0086 -3.7822 34 1 2.5996 0.2558 -4.7418 35 1 3.4356 3.2140 -5.1717 36 1 4.5049 1.7453 -5.1378 37 1 3.5188 0.8687 -7.2043 38 1 3.1372 2.6146 -7.5319 39 1 1.1357 0.7292 -6.6492 40 1 1.0581 2.4964 -6.2373 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000688648653.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:41:59 Heat of formation + Delta-G solvation = -10.293236 kcal Electronic energy + Delta-G solvation = -16402.813461 eV Core-core repulsion = 14023.942480 eV Total energy + Delta-G solvation = -2378.870982 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.98912 -38.72742 -34.94217 -33.21311 -31.67570 -28.67552 -26.94919 -26.39805 -25.44798 -23.68700 -22.25584 -20.74474 -20.15166 -18.29228 -17.03115 -16.46061 -16.17097 -15.97053 -15.25720 -14.92053 -14.74711 -14.30981 -13.67590 -13.42006 -13.25640 -13.24616 -13.11823 -12.88715 -12.76459 -12.48130 -12.45646 -12.03704 -11.96892 -11.78972 -11.54116 -11.34262 -11.14152 -11.06748 -10.88491 -10.73489 -10.41746 -8.90776 -8.03025 -6.25925 1.34883 1.36835 1.45603 2.38917 3.14569 3.45312 3.82339 3.85580 3.97633 4.07730 4.33265 4.48376 4.68446 4.71177 4.74800 4.77018 4.85086 4.90449 4.93272 4.94017 4.96265 5.04628 5.11945 5.13569 5.16059 5.22292 5.30937 5.42633 5.46694 5.53449 5.56513 5.63470 5.71692 5.80584 6.08655 6.21831 6.41126 6.71677 6.96234 7.44839 8.91618 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.024598 B = 0.007873 C = 0.006712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.041916 B = 3555.782152 C = 4170.443444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.002 0.998 5 C -0.550 4.550 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.278 1.278 11 H -0.281 1.281 12 H -0.273 1.273 13 N -0.538 5.538 14 C 0.037 3.963 15 C 0.074 3.926 16 C -0.091 4.091 17 C -0.115 4.115 18 C -0.144 4.144 19 C -0.134 4.134 20 C -0.128 4.128 21 H 0.058 0.942 22 H 0.046 0.954 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.061 0.939 26 H 0.261 0.739 27 H 0.006 0.994 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.010 0.990 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.677 2.447 -13.891 14.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.109 3.891 4 H 0.020 0.980 5 C -0.590 4.590 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.207 1.207 12 H -0.198 1.198 13 N -0.261 5.261 14 C -0.111 4.111 15 C -0.054 4.054 16 C -0.129 4.129 17 C -0.134 4.134 18 C -0.181 4.181 19 C -0.171 4.171 20 C -0.166 4.166 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.025 0.975 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.176 2.282 -13.773 14.318 hybrid contribution 2.096 0.029 0.922 2.290 sum -1.080 2.311 -12.852 13.102 Atomic orbital electron populations 1.21577 0.96255 0.99983 1.00596 1.21432 0.94566 0.98193 1.00141 1.19080 0.91709 0.91669 0.86631 0.98010 1.21993 0.94134 1.37454 1.05370 0.93426 1.25613 1.01789 0.94981 0.95541 1.70005 1.36255 1.38909 1.09872 0.85767 0.81538 0.77617 0.78000 1.20369 1.20664 1.19799 1.62429 1.56527 1.03144 1.04003 1.22190 0.98169 0.89547 1.01238 1.21852 0.94520 0.98627 0.90413 1.21484 0.99164 1.00032 0.92204 1.22545 0.97126 0.99408 0.94312 1.23035 0.97797 0.99976 0.97316 1.22811 0.96549 1.02003 0.95772 1.22896 0.96562 1.02199 0.94919 0.92277 0.93504 0.94912 0.95101 0.92066 0.92931 0.97508 0.90585 0.93025 0.97158 0.92961 0.91742 0.92032 0.90264 0.90371 0.92770 0.89897 0.90551 0.90970 0.89670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 9.85 71.98 0.71 -4.46 16 2 C -0.10 -5.11 5.19 30.60 0.16 -4.95 16 3 C 0.22 11.03 1.70 44.17 0.08 11.10 16 4 H 0.00 0.11 8.04 -2.39 -0.02 0.09 16 5 C -0.55 -30.31 7.20 25.60 0.18 -30.13 16 6 H 0.05 2.65 5.99 -2.91 -0.02 2.63 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -52.66 11.29 21.45 0.24 -52.41 16 9 Si 0.94 44.14 29.54 68.60 2.03 46.16 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 13 N -0.54 -22.98 4.02 -901.44 -3.62 -26.60 16 14 C 0.04 1.45 9.21 127.69 1.18 2.63 16 15 C 0.07 2.90 4.04 86.31 0.35 3.25 16 16 C -0.09 -2.73 5.09 30.60 0.16 -2.57 16 17 C -0.11 -2.95 3.64 -10.27 -0.04 -2.99 16 18 C -0.14 -3.46 7.65 31.18 0.24 -3.22 16 19 C -0.13 -2.56 8.09 31.18 0.25 -2.30 16 20 C -0.13 -2.58 7.64 31.12 0.24 -2.34 16 21 H 0.06 2.29 7.62 -2.39 -0.02 2.27 16 22 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 23 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.03 1.47 6.17 -2.39 -0.01 1.46 16 25 H 0.06 3.36 5.96 -2.39 -0.01 3.35 16 26 H 0.26 14.40 8.31 -92.71 -0.77 13.62 16 27 H 0.01 0.27 7.22 -2.38 -0.02 0.25 16 28 H 0.08 2.45 6.58 -2.39 -0.02 2.43 16 29 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 30 H 0.01 0.44 6.70 -2.39 -0.02 0.42 16 31 H 0.05 2.21 5.94 -2.39 -0.01 2.20 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.76 6.44 -2.39 -0.02 1.74 16 34 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.08 1.87 7.92 -2.39 -0.02 1.85 16 36 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.61 8.10 -2.38 -0.02 1.59 16 Total: -1.00 -58.57 305.00 3.57 -55.00 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.97 Total: 12.24 kcal Atomic # 6 Polarization: -38.34 SS G_CDS: 3.95 Total: -34.40 kcal Atomic # 7 Polarization: -75.63 SS G_CDS: -3.38 Total: -79.01 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -58.57 3.57 -55.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000688648653.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.709 kcal (2) G-P(sol) polarization free energy of solvation -58.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds