Wall clock time and date at job start Mon Mar 30 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47252 * 2 1 4 4 H 1.09005 * 109.47046 * 182.51368 * 3 2 1 5 5 C 1.50703 * 109.47468 * 62.51168 * 3 2 1 6 6 H 1.08006 * 119.99682 * 240.00302 * 5 3 2 7 7 C 1.37871 * 119.99941 * 60.27590 * 5 3 2 8 8 N 1.31517 * 119.99865 * 359.72171 * 7 5 3 9 9 Si 1.86801 * 119.99901 * 179.72731 * 7 5 3 10 10 H 1.48501 * 109.47228 * 89.99747 * 9 7 5 11 11 H 1.48500 * 109.46910 * 209.99944 * 9 7 5 12 12 H 1.48498 * 109.47020 * 329.99695 * 9 7 5 13 13 N 1.46905 * 109.46913 * 302.50917 * 3 2 1 14 14 C 1.46904 * 110.99769 * 175.60201 * 13 3 2 15 15 C 1.46896 * 111.00213 * 299.55749 * 13 3 2 16 16 H 1.09004 * 110.01650 * 53.86034 * 15 13 3 17 17 C 1.54273 * 110.03371 * 292.47148 * 15 13 3 18 18 C 1.54964 * 104.15994 * 217.13777 * 17 15 13 19 19 C 1.54888 * 102.77730 * 37.88219 * 18 17 15 20 20 C 1.53873 * 110.03604 * 175.25376 * 15 13 3 21 21 H 1.09007 * 110.02817 * 359.94743 * 20 15 13 22 22 C 1.53004 * 110.03125 * 238.57071 * 20 15 13 23 23 H 1.09004 * 109.46992 * 303.91808 * 1 2 3 24 24 H 1.09002 * 109.46981 * 63.90966 * 1 2 3 25 25 H 1.08999 * 109.47647 * 183.91266 * 1 2 3 26 26 H 1.08997 * 109.46837 * 239.99277 * 2 1 3 27 27 H 1.08996 * 109.46731 * 119.99813 * 2 1 3 28 28 H 0.97004 * 119.99161 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46962 * 52.72643 * 14 13 3 30 30 H 1.09000 * 109.46902 * 172.71769 * 14 13 3 31 31 H 1.09002 * 109.47342 * 292.72222 * 14 13 3 32 32 H 1.09003 * 110.48325 * 335.78309 * 17 15 13 33 33 H 1.09003 * 110.48714 * 98.42010 * 17 15 13 34 34 H 1.08997 * 110.71599 * 279.56973 * 18 17 15 35 35 H 1.09002 * 110.92371 * 156.29511 * 18 17 15 36 36 H 1.09004 * 110.48597 * 203.40414 * 19 18 17 37 37 H 1.09004 * 110.59490 * 80.82531 * 19 18 17 38 38 H 1.09001 * 109.46760 * 59.99722 * 22 20 15 39 39 H 1.08999 * 109.46608 * 179.97438 * 22 20 15 40 40 H 1.08999 * 109.47166 * 299.99466 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1291 1.4427 -0.0451 5 6 1.5892 2.1348 1.2604 6 1 0.9650 3.0141 1.1998 7 6 1.9783 1.6489 2.4906 8 7 2.7383 0.5781 2.5643 9 14 1.4258 2.5115 4.0527 10 1 0.1368 1.9320 4.5088 11 1 2.4528 2.3276 5.1094 12 1 1.2485 3.9608 3.7817 13 7 1.5014 2.1522 -1.1680 14 6 1.8855 3.5700 -1.1457 15 6 1.9300 1.5103 -2.4179 16 1 1.6717 0.4514 -2.4011 17 6 3.4520 1.6800 -2.6043 18 6 3.6257 1.8930 -4.1294 19 6 2.3971 2.7619 -4.4960 20 6 1.2595 2.1975 -3.6203 21 1 0.6153 3.0068 -3.2764 22 6 0.4411 1.1791 -4.4166 23 1 -0.3633 0.5735 0.8528 24 1 -0.3633 0.4520 -0.9230 25 1 -0.3634 -1.0252 0.0701 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.0117 0.2362 3.4300 29 1 2.9660 3.6518 -1.0271 30 1 1.5860 4.0423 -2.0813 31 1 1.3897 4.0677 -0.3123 32 1 3.8088 2.5510 -2.0546 33 1 3.9784 0.7819 -2.2812 34 1 3.5963 0.9400 -4.6576 35 1 4.5528 2.4241 -4.3452 36 1 2.1546 2.6531 -5.5532 37 1 2.5817 3.8086 -4.2538 38 1 -0.3280 0.7495 -3.7747 39 1 -0.0298 1.6754 -5.2652 40 1 1.0977 0.3872 -4.7769 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690941100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:12 Heat of formation + Delta-G solvation = -12.052948 kcal Electronic energy + Delta-G solvation = -17081.557140 eV Core-core repulsion = 14702.609851 eV Total energy + Delta-G solvation = -2378.947289 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.14721 -35.59838 -32.50216 -30.86791 -30.64172 -27.68557 -26.30439 -25.02600 -24.04773 -22.34728 -20.36492 -19.29522 -18.06400 -15.97477 -15.67398 -15.10660 -14.56342 -13.99574 -13.54846 -13.31521 -13.05768 -12.52954 -12.29042 -12.04285 -11.80009 -11.60972 -11.30107 -10.99435 -10.90970 -10.81995 -10.63562 -10.41886 -10.29903 -10.25627 -10.09176 -9.97829 -9.77344 -9.52274 -9.30502 -8.71071 -8.34435 -6.97038 -5.95759 -3.98912 3.32771 3.39390 3.42304 4.44416 4.91460 4.98426 5.10239 5.33552 5.40232 5.65973 5.73788 5.80670 5.90653 5.96750 6.01471 6.15565 6.19667 6.26298 6.33394 6.36788 6.45406 6.50274 6.57560 6.61101 6.65135 6.75913 6.82383 6.89666 6.98854 7.19897 7.42106 7.51047 7.73535 7.83993 7.89697 8.28153 8.42984 8.71560 9.07411 9.64993 11.10581 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038184 B = 0.008226 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.107694 B = 3403.018820 C = 3549.084645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.526 5.526 14 C 0.037 3.963 15 C 0.083 3.917 16 H 0.082 0.918 17 C -0.158 4.158 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.093 4.093 21 H 0.079 0.921 22 C -0.138 4.138 23 H 0.057 0.943 24 H 0.041 0.959 25 H 0.014 0.986 26 H 0.012 0.988 27 H 0.090 0.910 28 H 0.259 0.741 29 H 0.016 0.984 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 1.865 -11.189 11.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.149 4.149 3 C 0.111 3.889 4 H 0.017 0.983 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.533 5.533 9 Si 0.720 3.280 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.249 5.249 14 C -0.112 4.112 15 C -0.026 4.026 16 H 0.100 0.900 17 C -0.197 4.197 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.112 4.112 21 H 0.097 0.903 22 C -0.195 4.195 23 H 0.076 0.924 24 H 0.060 0.940 25 H 0.033 0.967 26 H 0.030 0.970 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.344 1.724 -10.998 11.213 hybrid contribution 0.725 0.393 0.931 1.244 sum -0.618 2.117 -10.067 10.306 Atomic orbital electron populations 1.21462 0.97415 0.97425 1.01473 1.21551 0.95027 0.98412 0.99900 1.19251 0.92527 0.90656 0.86504 0.98290 1.21124 1.30574 1.11881 0.89837 0.92076 1.24902 0.95274 0.95139 0.98895 1.69887 1.36278 1.22631 1.24461 0.86598 0.78270 0.79956 0.83170 1.20752 1.21458 1.20042 1.62345 1.59198 1.01640 1.01763 1.22211 0.97852 0.90908 1.00184 1.22427 0.90931 0.99001 0.90256 0.90033 1.23074 0.99307 1.01989 0.95357 1.22420 0.97396 0.99287 0.96719 1.22428 0.95485 0.99023 0.98799 1.21820 0.96416 0.98225 0.94702 0.90292 1.21807 0.99662 0.98762 0.99279 0.92372 0.94024 0.96727 0.96965 0.89147 0.93130 0.96602 0.93790 0.91434 0.91104 0.92245 0.92099 0.92541 0.92331 0.92167 0.92455 0.93518 0.93253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 9.52 37.16 0.35 -2.33 16 2 C -0.11 -2.66 5.10 -26.73 -0.14 -2.80 16 3 C 0.22 5.35 1.55 -68.86 -0.11 5.24 16 4 H 0.00 -0.01 7.35 -51.93 -0.38 -0.39 16 5 C -0.50 -13.30 6.78 -34.44 -0.23 -13.53 16 6 H 0.06 1.65 6.39 -52.48 -0.34 1.32 16 7 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 8 N -0.89 -25.34 11.31 55.43 0.63 -24.72 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 N -0.53 -11.06 3.78 -226.94 -0.86 -11.92 16 14 C 0.04 0.73 8.25 60.07 0.50 1.22 16 15 C 0.08 1.50 2.40 -66.59 -0.16 1.34 16 16 H 0.08 1.56 5.63 -51.93 -0.29 1.27 16 17 C -0.16 -2.72 5.21 -25.03 -0.13 -2.85 16 18 C -0.12 -1.66 6.91 -24.70 -0.17 -1.83 16 19 C -0.12 -1.58 6.33 -25.08 -0.16 -1.74 16 20 C -0.09 -1.39 2.50 -89.51 -0.22 -1.62 16 21 H 0.08 1.26 6.53 -51.92 -0.34 0.93 16 22 C -0.14 -1.83 8.83 37.16 0.33 -1.50 16 23 H 0.06 1.40 7.17 -51.93 -0.37 1.03 16 24 H 0.04 0.88 7.67 -51.93 -0.40 0.48 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 26 H 0.01 0.27 6.42 -51.93 -0.33 -0.07 16 27 H 0.09 2.44 6.02 -51.93 -0.31 2.12 16 28 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.02 0.32 6.30 -51.93 -0.33 -0.01 16 30 H 0.04 0.75 6.10 -51.93 -0.32 0.43 16 31 H 0.07 1.41 6.50 -51.93 -0.34 1.07 16 32 H 0.07 1.31 5.67 -51.93 -0.29 1.02 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.68 7.84 -51.93 -0.41 0.27 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 293.68 15.07 4.43 4.43 Total: -1.00 -27.24 293.68 -8.03 -35.26 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.97 Total: -0.51 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -0.24 Total: -18.88 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: -0.23 Total: -36.63 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.24 -8.03 -35.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690941100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.212 kcal (2) G-P(sol) polarization free energy of solvation -27.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds