Wall clock time and date at job start Mon Mar 30 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47252 * 2 1 4 4 H 1.09005 * 109.47046 * 182.51368 * 3 2 1 5 5 C 1.50703 * 109.47468 * 62.51168 * 3 2 1 6 6 H 1.08006 * 119.99682 * 240.00302 * 5 3 2 7 7 C 1.37871 * 119.99941 * 60.27590 * 5 3 2 8 8 N 1.31517 * 119.99865 * 359.72171 * 7 5 3 9 9 Si 1.86801 * 119.99901 * 179.72731 * 7 5 3 10 10 H 1.48501 * 109.47228 * 89.99747 * 9 7 5 11 11 H 1.48500 * 109.46910 * 209.99944 * 9 7 5 12 12 H 1.48498 * 109.47020 * 329.99695 * 9 7 5 13 13 N 1.46905 * 109.46913 * 302.50917 * 3 2 1 14 14 C 1.46904 * 110.99769 * 175.60201 * 13 3 2 15 15 C 1.46896 * 111.00213 * 299.55749 * 13 3 2 16 16 H 1.09004 * 110.01650 * 53.86034 * 15 13 3 17 17 C 1.54273 * 110.03371 * 292.47148 * 15 13 3 18 18 C 1.54964 * 104.15994 * 217.13777 * 17 15 13 19 19 C 1.54888 * 102.77730 * 37.88219 * 18 17 15 20 20 C 1.53873 * 110.03604 * 175.25376 * 15 13 3 21 21 H 1.09007 * 110.02817 * 359.94743 * 20 15 13 22 22 C 1.53004 * 110.03125 * 238.57071 * 20 15 13 23 23 H 1.09004 * 109.46992 * 303.91808 * 1 2 3 24 24 H 1.09002 * 109.46981 * 63.90966 * 1 2 3 25 25 H 1.08999 * 109.47647 * 183.91266 * 1 2 3 26 26 H 1.08997 * 109.46837 * 239.99277 * 2 1 3 27 27 H 1.08996 * 109.46731 * 119.99813 * 2 1 3 28 28 H 0.97004 * 119.99161 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.46962 * 52.72643 * 14 13 3 30 30 H 1.09000 * 109.46902 * 172.71769 * 14 13 3 31 31 H 1.09002 * 109.47342 * 292.72222 * 14 13 3 32 32 H 1.09003 * 110.48325 * 335.78309 * 17 15 13 33 33 H 1.09003 * 110.48714 * 98.42010 * 17 15 13 34 34 H 1.08997 * 110.71599 * 279.56973 * 18 17 15 35 35 H 1.09002 * 110.92371 * 156.29511 * 18 17 15 36 36 H 1.09004 * 110.48597 * 203.40414 * 19 18 17 37 37 H 1.09004 * 110.59490 * 80.82531 * 19 18 17 38 38 H 1.09001 * 109.46760 * 59.99722 * 22 20 15 39 39 H 1.08999 * 109.46608 * 179.97438 * 22 20 15 40 40 H 1.08999 * 109.47166 * 299.99466 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1291 1.4427 -0.0451 5 6 1.5892 2.1348 1.2604 6 1 0.9650 3.0141 1.1998 7 6 1.9783 1.6489 2.4906 8 7 2.7383 0.5781 2.5643 9 14 1.4258 2.5115 4.0527 10 1 0.1368 1.9320 4.5088 11 1 2.4528 2.3276 5.1094 12 1 1.2485 3.9608 3.7817 13 7 1.5014 2.1522 -1.1680 14 6 1.8855 3.5700 -1.1457 15 6 1.9300 1.5103 -2.4179 16 1 1.6717 0.4514 -2.4011 17 6 3.4520 1.6800 -2.6043 18 6 3.6257 1.8930 -4.1294 19 6 2.3971 2.7619 -4.4960 20 6 1.2595 2.1975 -3.6203 21 1 0.6153 3.0068 -3.2764 22 6 0.4411 1.1791 -4.4166 23 1 -0.3633 0.5735 0.8528 24 1 -0.3633 0.4520 -0.9230 25 1 -0.3634 -1.0252 0.0701 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 3.0117 0.2362 3.4300 29 1 2.9660 3.6518 -1.0271 30 1 1.5860 4.0423 -2.0813 31 1 1.3897 4.0677 -0.3123 32 1 3.8088 2.5510 -2.0546 33 1 3.9784 0.7819 -2.2812 34 1 3.5963 0.9400 -4.6576 35 1 4.5528 2.4241 -4.3452 36 1 2.1546 2.6531 -5.5532 37 1 2.5817 3.8086 -4.2538 38 1 -0.3280 0.7495 -3.7747 39 1 -0.0298 1.6754 -5.2652 40 1 1.0977 0.3872 -4.7769 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690941100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:12 Heat of formation + Delta-G solvation = -26.665342 kcal Electronic energy + Delta-G solvation = -17082.190781 eV Core-core repulsion = 14702.609851 eV Total energy + Delta-G solvation = -2379.580930 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.59896 -37.25937 -34.38044 -32.76976 -31.82508 -29.20265 -28.12705 -26.47673 -25.67132 -24.06209 -21.87250 -20.78676 -19.57454 -18.00788 -17.25244 -16.66654 -16.16146 -15.61358 -15.26285 -14.89986 -14.47948 -14.03622 -13.86350 -13.52962 -13.23295 -13.11052 -12.98719 -12.79031 -12.66698 -12.40000 -12.19644 -11.99385 -11.85188 -11.68909 -11.58233 -11.38285 -11.31690 -11.24884 -11.02896 -10.69776 -10.42132 -8.71356 -8.06206 -6.15793 1.41130 1.42326 1.51493 2.43883 3.21790 3.45058 3.75296 3.89806 4.07417 4.48502 4.51938 4.58830 4.59570 4.65811 4.71637 4.75265 4.76217 4.82981 4.87796 4.95603 5.02630 5.07457 5.17728 5.20777 5.27762 5.30212 5.34959 5.42841 5.50375 5.53694 5.57460 5.61533 5.77405 5.82439 5.94202 6.35442 6.50979 6.89243 6.99855 7.52157 8.99144 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.038184 B = 0.008226 C = 0.007887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.107694 B = 3403.018820 C = 3549.084645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.106 4.106 3 C 0.226 3.774 4 H -0.041 1.041 5 C -0.504 4.504 6 H 0.056 0.944 7 C 0.012 3.988 8 N -0.920 5.920 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.270 1.270 13 N -0.530 5.530 14 C 0.043 3.957 15 C 0.079 3.921 16 H 0.068 0.932 17 C -0.159 4.159 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.089 4.089 21 H 0.071 0.929 22 C -0.134 4.134 23 H 0.035 0.965 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.023 0.977 27 H 0.059 0.941 28 H 0.258 0.742 29 H 0.004 0.996 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.039 0.961 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 2.533 -12.983 13.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.144 4.144 3 C 0.119 3.881 4 H -0.023 1.023 5 C -0.543 4.543 6 H 0.074 0.926 7 C -0.186 4.186 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.253 5.253 14 C -0.105 4.105 15 C -0.030 4.030 16 H 0.086 0.914 17 C -0.198 4.198 18 C -0.149 4.149 19 C -0.150 4.150 20 C -0.107 4.107 21 H 0.090 0.910 22 C -0.191 4.191 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.041 0.959 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.023 0.977 30 H 0.093 0.907 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.206 2.401 -12.809 13.218 hybrid contribution 1.021 0.170 1.459 1.789 sum -1.185 2.571 -11.351 11.698 Atomic orbital electron populations 1.21308 0.95754 0.98397 1.00951 1.21415 0.96357 0.97783 0.98862 1.18984 0.90140 0.91398 0.87622 1.02306 1.21357 1.30194 1.11727 0.90986 0.92612 1.25625 0.95440 0.95778 1.01793 1.70026 1.37272 1.23809 1.24963 0.85661 0.77838 0.79140 0.79629 1.20288 1.21284 1.19426 1.62281 1.59018 1.02125 1.01859 1.22161 0.96958 0.90270 1.01127 1.22542 0.91888 0.98434 0.90107 0.91357 1.23013 0.98413 1.00236 0.98158 1.22393 0.98574 1.00384 0.93570 1.22408 0.93933 0.98774 0.99879 1.21781 0.96964 0.98236 0.93756 0.91039 1.21774 0.99264 0.98554 0.99529 0.94607 0.92878 0.94735 0.95872 0.92245 0.93248 0.97710 0.90701 0.93053 0.92968 0.94170 0.90858 0.91170 0.89641 0.91886 0.93620 0.91173 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.72 9.52 71.98 0.69 -4.03 16 2 C -0.11 -5.19 5.10 30.59 0.16 -5.03 16 3 C 0.23 11.46 1.55 44.17 0.07 11.53 16 4 H -0.04 -2.34 7.35 -2.38 -0.02 -2.36 16 5 C -0.50 -27.65 6.78 25.60 0.17 -27.47 16 6 H 0.06 3.06 6.39 -2.91 -0.02 3.04 16 7 C 0.01 0.65 5.30 84.65 0.45 1.10 16 8 N -0.92 -53.66 11.31 21.45 0.24 -53.41 16 9 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 13 N -0.53 -22.36 3.78 -871.91 -3.29 -25.66 16 14 C 0.04 1.69 8.25 127.69 1.05 2.75 16 15 C 0.08 2.80 2.40 45.64 0.11 2.91 16 16 H 0.07 2.59 5.63 -2.38 -0.01 2.57 16 17 C -0.16 -5.44 5.21 31.70 0.17 -5.28 16 18 C -0.11 -2.79 6.91 31.91 0.22 -2.57 16 19 C -0.11 -2.57 6.33 31.67 0.20 -2.37 16 20 C -0.09 -2.44 2.50 -10.07 -0.03 -2.46 16 21 H 0.07 2.10 6.53 -2.38 -0.02 2.08 16 22 C -0.13 -3.14 8.83 71.98 0.64 -2.50 16 23 H 0.03 1.71 7.17 -2.38 -0.02 1.70 16 24 H 0.05 2.19 7.67 -2.39 -0.02 2.17 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.02 1.05 6.42 -2.39 -0.02 1.03 16 27 H 0.06 3.30 6.02 -2.39 -0.01 3.29 16 28 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 29 H 0.00 0.19 6.30 -2.39 -0.02 0.17 16 30 H 0.07 2.44 6.10 -2.39 -0.01 2.43 16 31 H 0.05 2.16 6.50 -2.39 -0.02 2.14 16 32 H 0.05 1.97 5.67 -2.39 -0.01 1.96 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.56 7.84 -2.39 -0.02 1.54 16 37 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 38 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -59.44 293.68 3.86 -55.58 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.99 Total: 10.58 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 3.89 Total: -33.43 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -3.05 Total: -79.07 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -59.44 3.86 -55.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690941100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.917 kcal (2) G-P(sol) polarization free energy of solvation -59.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds