Wall clock time and date at job start Mon Mar 30 2020 02:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 H 1.08993 * 109.47472 * 304.17575 * 3 2 1 5 5 C 1.50706 * 109.47072 * 184.17292 * 3 2 1 6 6 H 1.07999 * 119.99632 * 240.00252 * 5 3 2 7 7 C 1.37871 * 120.00082 * 59.99988 * 5 3 2 8 8 N 1.31516 * 120.00220 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 120.00177 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47186 * 90.00003 * 9 7 5 11 11 H 1.48502 * 109.47080 * 210.00308 * 9 7 5 12 12 H 1.48500 * 109.46858 * 330.00027 * 9 7 5 13 13 N 1.46895 * 109.46891 * 64.17712 * 3 2 1 14 14 C 1.46903 * 110.99623 * 224.54621 * 13 3 2 15 15 C 1.53001 * 109.47456 * 65.46947 * 14 13 3 16 16 C 1.53003 * 109.46942 * 185.46907 * 14 13 3 17 17 C 1.53003 * 109.47436 * 300.49817 * 16 14 13 18 18 C 1.52995 * 109.47028 * 305.46676 * 14 13 3 19 19 C 1.53001 * 117.50412 * 247.06429 * 18 14 13 20 20 C 1.53002 * 60.00294 * 252.51143 * 19 18 14 21 21 H 1.09007 * 109.47035 * 184.10103 * 1 2 3 22 22 H 1.09003 * 109.46931 * 304.09650 * 1 2 3 23 23 H 1.08998 * 109.47627 * 64.09665 * 1 2 3 24 24 H 1.09003 * 109.47009 * 240.00133 * 2 1 3 25 25 H 1.08998 * 109.47561 * 120.00465 * 2 1 3 26 26 H 0.96999 * 120.00410 * 179.97438 * 8 7 5 27 27 H 1.00905 * 111.00380 * 348.49587 * 13 3 2 28 28 H 1.08994 * 109.47310 * 172.94328 * 15 14 13 29 29 H 1.09004 * 109.46980 * 52.94585 * 15 14 13 30 30 H 1.08993 * 109.46941 * 292.94528 * 15 14 13 31 31 H 1.09001 * 109.47342 * 60.49754 * 16 14 13 32 32 H 1.09005 * 109.47012 * 180.49867 * 16 14 13 33 33 H 1.09000 * 109.46654 * 64.16508 * 17 16 14 34 34 H 1.08992 * 109.47344 * 184.16974 * 17 16 14 35 35 H 1.09002 * 109.46292 * 304.16725 * 17 16 14 36 36 H 1.09001 * 115.55198 * 32.77820 * 18 14 13 37 37 H 1.09005 * 117.49270 * 359.97438 * 19 18 14 38 38 H 1.09000 * 117.50256 * 145.01970 * 19 18 14 39 39 H 1.08995 * 117.49492 * 252.50809 * 20 19 18 40 40 H 1.09005 * 117.49756 * 107.48367 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6169 1.9775 -0.8501 5 6 3.5435 1.4437 -0.1034 6 1 4.1381 1.8920 0.6788 7 6 4.1598 0.8725 -1.1964 8 7 3.4356 0.3270 -2.1492 9 14 6.0234 0.8734 -1.3243 10 1 6.5637 -0.3556 -0.6897 11 1 6.4215 0.9080 -2.7546 12 1 6.5666 2.0687 -0.6303 13 7 1.6344 2.1052 1.2467 14 6 1.1136 3.4528 0.9811 15 6 -0.1807 3.3492 0.1717 16 6 0.8302 4.1606 2.3076 17 6 -0.1958 3.3546 3.1068 18 6 2.1488 4.2524 0.1874 19 6 2.8070 5.4445 0.8849 20 6 1.7772 5.6791 -0.2220 21 1 -0.3633 -1.0251 0.0735 22 1 -0.3633 0.5761 0.8510 23 1 -0.3634 0.4489 -0.9244 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 3.8692 -0.0745 -2.9184 27 1 0.9586 1.5488 1.7487 28 1 -0.6331 4.3367 0.0818 29 1 -0.8732 2.6770 0.6784 30 1 0.0423 2.9599 -0.8217 31 1 1.7539 4.2424 2.8804 32 1 0.4354 5.1574 2.1105 33 1 0.2276 2.3846 3.3675 34 1 -0.4531 3.8954 4.0175 35 1 -1.0927 3.2096 2.5046 36 1 2.7602 3.6734 -0.5047 37 1 2.5022 5.6593 1.9092 38 1 3.8519 5.6498 0.6520 39 1 2.1445 6.0387 -1.1831 40 1 0.7951 6.0480 0.0742 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691614058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:17 Heat of formation + Delta-G solvation = 13.903314 kcal Electronic energy + Delta-G solvation = -17097.086989 eV Core-core repulsion = 14719.265248 eV Total energy + Delta-G solvation = -2377.821741 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.03074 -35.47230 -33.56710 -31.68802 -30.08485 -28.19015 -26.08859 -24.35765 -22.69218 -21.96574 -21.52621 -19.65839 -17.37132 -16.16684 -15.58631 -15.15127 -14.58754 -14.05869 -13.47972 -13.26640 -12.95310 -12.80573 -12.43051 -12.17128 -11.65047 -11.57909 -11.48694 -11.15499 -10.89029 -10.84285 -10.63813 -10.57378 -10.31031 -10.09060 -9.78755 -9.63042 -9.53837 -9.39216 -9.24902 -8.97755 -8.26893 -7.05994 -5.90387 -3.92507 3.35601 3.42330 3.46683 4.44035 4.51227 5.17830 5.29525 5.36728 5.38567 5.53853 5.62893 5.68616 5.86747 5.97719 6.04681 6.12166 6.12955 6.18384 6.21209 6.23569 6.33823 6.39951 6.42771 6.54368 6.60070 6.65671 6.72404 6.85440 6.89154 7.11862 7.20161 7.35490 7.58829 7.83509 8.01323 8.42677 8.58004 8.83232 9.16865 9.71539 11.14458 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.010939 C = 0.008674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.258025 B = 2559.089568 C = 3227.247283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.216 3.784 4 H 0.020 0.980 5 C -0.482 4.482 6 H 0.062 0.938 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.674 5.674 14 C 0.151 3.849 15 C -0.175 4.175 16 C -0.111 4.111 17 C -0.154 4.154 18 C -0.119 4.119 19 C -0.185 4.185 20 C -0.195 4.195 21 H 0.034 0.966 22 H 0.035 0.965 23 H 0.042 0.958 24 H 0.099 0.901 25 H 0.037 0.963 26 H 0.258 0.742 27 H 0.320 0.680 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.215 6.110 5.289 10.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C 0.108 3.892 4 H 0.038 0.962 5 C -0.521 4.521 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.305 5.305 14 C 0.059 3.941 15 C -0.234 4.234 16 C -0.148 4.148 17 C -0.211 4.211 18 C -0.137 4.137 19 C -0.221 4.221 20 C -0.233 4.233 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.117 0.883 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.139 0.861 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.152 0.848 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.543 6.230 5.265 9.862 hybrid contribution 0.137 -0.281 -0.604 0.681 sum -5.406 5.949 4.661 9.292 Atomic orbital electron populations 1.21935 0.99705 0.99268 0.99829 1.21947 0.91174 1.01290 1.02980 1.19204 0.95029 0.89142 0.85779 0.96207 1.21297 0.91353 1.34956 1.04490 0.91971 1.24962 0.97789 0.95936 0.96037 1.69869 1.34595 1.39516 1.09863 0.86624 0.86371 0.78350 0.76798 1.20949 1.21615 1.20005 1.60871 1.42877 1.01514 1.25259 1.20244 0.90685 0.91142 0.92055 1.22609 0.98392 1.00634 1.01732 1.21677 0.99018 0.97737 0.96415 1.21843 0.99137 1.00869 0.99288 1.22590 1.00434 0.88703 1.01971 1.22967 0.97398 1.04780 0.96996 1.22908 0.99389 1.01846 0.99131 0.94689 0.94607 0.93855 0.88289 0.94421 0.93257 0.86098 0.93579 0.93158 0.92000 0.91217 0.92853 0.92137 0.93631 0.93089 0.84756 0.89050 0.89777 0.89729 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 9.58 37.16 0.36 -2.52 16 2 C -0.14 -3.13 5.20 -26.73 -0.14 -3.27 16 3 C 0.22 5.14 1.13 -68.87 -0.08 5.06 16 4 H 0.02 0.53 5.35 -51.93 -0.28 0.25 16 5 C -0.48 -12.91 7.25 -34.44 -0.25 -13.16 16 6 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 7 C 0.05 1.43 5.29 -17.82 -0.09 1.34 16 8 N -0.90 -25.22 11.30 55.43 0.63 -24.59 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 N -0.67 -13.79 5.83 -94.25 -0.55 -14.34 16 14 C 0.15 2.69 0.55 -131.60 -0.07 2.62 16 15 C -0.17 -2.95 7.18 37.16 0.27 -2.68 16 16 C -0.11 -1.69 3.76 -26.73 -0.10 -1.79 16 17 C -0.15 -2.09 9.22 37.16 0.34 -1.75 16 18 C -0.12 -2.27 4.72 -90.62 -0.43 -2.69 16 19 C -0.18 -3.06 9.54 -26.73 -0.26 -3.31 16 20 C -0.20 -3.12 9.45 -26.73 -0.25 -3.37 16 21 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 22 H 0.03 0.62 5.67 -51.93 -0.29 0.33 16 23 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.10 2.60 5.97 -51.93 -0.31 2.29 16 25 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.32 6.16 4.85 -39.29 -0.19 5.97 16 28 H 0.05 0.70 7.45 -51.93 -0.39 0.31 16 29 H 0.05 0.80 5.88 -51.93 -0.31 0.49 16 30 H 0.06 1.18 6.61 -51.93 -0.34 0.84 16 31 H 0.07 1.12 7.02 -51.93 -0.36 0.76 16 32 H 0.05 0.75 7.14 -51.93 -0.37 0.38 16 33 H 0.06 0.86 6.92 -51.93 -0.36 0.50 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.67 6.39 -51.93 -0.33 0.34 16 36 H 0.13 3.13 5.50 -51.93 -0.29 2.84 16 37 H 0.09 1.39 5.83 -51.93 -0.30 1.09 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.21 7.16 -51.93 -0.37 0.84 16 LS Contribution 293.58 15.07 4.42 4.42 Total: -1.00 -26.82 293.58 -7.80 -34.62 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -6.58 Total: 8.95 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: -0.70 Total: -25.53 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: 0.08 Total: -38.93 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.82 -7.80 -34.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.524 kcal (2) G-P(sol) polarization free energy of solvation -26.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds