Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47139 * 2 1 4 4 H 1.09006 * 109.47394 * 55.60585 * 3 2 1 5 5 C 1.50698 * 109.47453 * 175.60892 * 3 2 1 6 6 H 1.07996 * 120.00584 * 119.99705 * 5 3 2 7 7 C 1.37880 * 119.99558 * 299.99912 * 5 3 2 8 8 N 1.31512 * 120.00343 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99757 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47057 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47155 * 120.00323 * 9 7 5 12 12 H 1.48501 * 109.47169 * 240.00400 * 9 7 5 13 13 N 1.46898 * 109.47453 * 295.60780 * 3 2 1 14 14 C 1.46898 * 111.00556 * 149.98536 * 13 3 2 15 15 C 1.52998 * 109.46908 * 54.48220 * 14 13 3 16 16 C 1.53005 * 109.47316 * 294.48467 * 14 13 3 17 17 C 1.53001 * 109.46665 * 297.48871 * 16 14 13 18 18 C 1.52998 * 109.47465 * 174.48228 * 14 13 3 19 19 C 1.53003 * 117.50108 * 243.62386 * 18 14 13 20 20 C 1.53000 * 59.99967 * 252.51292 * 19 18 14 21 21 H 1.09001 * 109.47230 * 305.88882 * 1 2 3 22 22 H 1.09003 * 109.47374 * 65.89316 * 1 2 3 23 23 H 1.09001 * 109.47174 * 185.89572 * 1 2 3 24 24 H 1.08999 * 109.47093 * 240.00359 * 2 1 3 25 25 H 1.08998 * 109.47432 * 120.00042 * 2 1 3 26 26 H 0.97000 * 119.99947 * 179.97438 * 8 7 5 27 27 H 1.00906 * 110.99860 * 26.02932 * 13 3 2 28 28 H 1.09003 * 109.47309 * 59.66995 * 15 14 13 29 29 H 1.09001 * 109.47560 * 179.66990 * 15 14 13 30 30 H 1.08999 * 109.47246 * 299.66982 * 15 14 13 31 31 H 1.09007 * 109.46639 * 57.48407 * 16 14 13 32 32 H 1.08994 * 109.46917 * 177.48665 * 16 14 13 33 33 H 1.09001 * 109.46278 * 185.10818 * 17 16 14 34 34 H 1.08993 * 109.47320 * 305.10667 * 17 16 14 35 35 H 1.08996 * 109.47448 * 65.11220 * 17 16 14 36 36 H 1.09006 * 115.55036 * 29.33369 * 18 14 13 37 37 H 1.08997 * 117.49604 * 0.02562 * 19 18 14 38 38 H 1.08998 * 117.49681 * 145.01644 * 19 18 14 39 39 H 1.09009 * 117.49545 * 252.51101 * 20 19 18 40 40 H 1.08992 * 117.50373 * 107.48831 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6138 1.9786 0.8480 5 6 3.5430 1.4439 0.1088 6 1 4.1406 1.8912 -0.6717 7 6 4.1554 0.8741 1.2049 8 7 3.4278 0.3290 2.1552 9 14 6.0186 0.8753 1.3394 10 1 6.6004 1.5447 0.1485 11 1 6.4258 1.6066 2.5661 12 1 6.5106 -0.5240 1.4110 13 7 1.6389 2.1037 -1.2489 14 6 1.4464 3.5454 -1.0431 15 6 2.7112 4.1458 -0.4262 16 6 0.2623 3.7726 -0.1011 17 6 -1.0139 3.2277 -0.7457 18 6 1.1652 4.2195 -2.3875 19 6 2.1825 5.2462 -2.8895 20 6 0.8194 5.7099 -2.3718 21 1 -0.3634 0.6024 0.8326 22 1 -0.3634 0.4197 -0.9380 23 1 -0.3633 -1.0222 0.1056 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8587 -0.0722 2.9261 27 1 0.8077 1.6790 -1.6321 28 1 3.5560 3.9789 -1.0946 29 1 2.5706 5.2167 -0.2789 30 1 2.9083 3.6697 0.5343 31 1 0.4430 3.2549 0.8410 32 1 0.1472 4.8400 0.0870 33 1 -1.8705 3.4699 -0.1167 34 1 -1.1458 3.6795 -1.7288 35 1 -0.9346 2.1457 -0.8507 36 1 0.6700 3.5957 -3.1317 37 1 3.0523 5.4411 -2.2622 38 1 2.3569 5.2979 -3.9642 39 1 0.0970 6.0666 -3.1061 40 1 0.7922 6.2100 -1.4038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691614062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = 15.174652 kcal Electronic energy + Delta-G solvation = -17101.350746 eV Core-core repulsion = 14723.584134 eV Total energy + Delta-G solvation = -2377.766611 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.09333 -35.80962 -33.10350 -31.53271 -30.44029 -27.90809 -26.55526 -23.48594 -23.15850 -22.11718 -21.65059 -19.34113 -17.62938 -16.18435 -16.00068 -14.83123 -14.51034 -14.16029 -13.97723 -13.23109 -12.93122 -12.65558 -12.30066 -12.02239 -11.66567 -11.41603 -11.14638 -11.11590 -10.87447 -10.84645 -10.56261 -10.40165 -10.34667 -10.13638 -10.05907 -9.70687 -9.59277 -9.49054 -9.28121 -8.86986 -8.28439 -7.05616 -5.90583 -3.91603 3.33942 3.42449 3.47545 4.21431 4.49738 5.00960 5.27312 5.35182 5.38578 5.51011 5.60152 5.72091 5.80703 5.89010 5.92729 6.14477 6.18154 6.21026 6.24736 6.31864 6.40726 6.42213 6.47223 6.52504 6.61188 6.73193 6.78572 6.91481 6.96958 7.18620 7.22600 7.41968 7.63425 7.84081 8.00888 8.43399 8.51614 8.86613 9.15810 9.71129 11.14657 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.010347 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.032327 B = 2705.327264 C = 3435.919951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.216 3.784 4 H 0.013 0.987 5 C -0.480 4.480 6 H 0.063 0.937 7 C 0.051 3.949 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.675 5.675 14 C 0.153 3.847 15 C -0.133 4.133 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.122 4.122 19 C -0.182 4.182 20 C -0.187 4.187 21 H 0.043 0.957 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.039 0.961 25 H 0.099 0.901 26 H 0.257 0.743 27 H 0.317 0.683 28 H 0.060 0.940 29 H 0.030 0.970 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 6.441 -5.614 10.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C 0.109 3.891 4 H 0.030 0.970 5 C -0.519 4.519 6 H 0.081 0.919 7 C -0.148 4.148 8 N -0.539 5.539 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.306 5.306 14 C 0.061 3.939 15 C -0.190 4.190 16 C -0.190 4.190 17 C -0.213 4.213 18 C -0.141 4.141 19 C -0.219 4.219 20 C -0.225 4.225 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.117 0.883 26 H 0.067 0.933 27 H 0.135 0.865 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.471 6.404 -5.671 10.154 hybrid contribution 0.105 -0.078 0.628 0.641 sum -5.366 6.326 -5.044 9.708 Atomic orbital electron populations 1.21981 0.99774 0.99567 0.99507 1.21819 0.91096 1.00848 1.02984 1.19222 0.95184 0.89436 0.85283 0.96988 1.21315 0.91256 1.34969 1.04320 0.91908 1.24949 0.97759 0.96000 0.96100 1.69878 1.34463 1.39659 1.09886 0.86578 0.86408 0.77503 0.77751 1.19821 1.21405 1.21325 1.60857 1.37592 1.00340 1.31812 1.20225 0.93343 0.89992 0.90300 1.22004 0.96842 0.97073 1.03069 1.22238 0.95766 1.00426 1.00525 1.21894 0.97292 1.01741 1.00378 1.22246 1.02422 0.90293 0.99129 1.23072 0.93715 1.04619 1.00470 1.22909 0.99032 0.98266 1.02258 0.93814 0.94405 0.94569 0.94253 0.88326 0.93327 0.86463 0.92087 0.95115 0.90071 0.91212 0.92882 0.93774 0.92890 0.92170 0.88593 0.88119 0.89852 0.89794 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.83 37.16 0.33 -2.56 16 2 C -0.13 -2.99 5.33 -26.73 -0.14 -3.13 16 3 C 0.22 5.14 1.37 -68.87 -0.09 5.05 16 4 H 0.01 0.33 5.37 -51.93 -0.28 0.05 16 5 C -0.48 -12.76 6.49 -34.44 -0.22 -12.98 16 6 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 7 C 0.05 1.40 5.29 -17.82 -0.09 1.31 16 8 N -0.90 -25.20 11.29 55.43 0.63 -24.58 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 13 N -0.67 -13.91 5.93 -94.25 -0.56 -14.47 16 14 C 0.15 2.78 0.56 -131.60 -0.07 2.71 16 15 C -0.13 -2.59 5.89 37.16 0.22 -2.37 16 16 C -0.15 -2.57 4.61 -26.73 -0.12 -2.69 16 17 C -0.16 -2.34 9.32 37.16 0.35 -1.99 16 18 C -0.12 -1.92 4.05 -90.62 -0.37 -2.28 16 19 C -0.18 -2.64 9.50 -26.73 -0.25 -2.89 16 20 C -0.19 -2.51 9.42 -26.73 -0.25 -2.77 16 21 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 22 H 0.04 0.65 5.14 -51.93 -0.27 0.38 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.10 2.59 5.96 -51.93 -0.31 2.28 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.32 6.11 5.09 -39.29 -0.20 5.91 16 28 H 0.06 1.25 6.75 -51.93 -0.35 0.89 16 29 H 0.03 0.52 7.15 -51.93 -0.37 0.15 16 30 H 0.08 1.84 5.87 -51.93 -0.30 1.54 16 31 H 0.07 1.37 6.16 -51.92 -0.32 1.05 16 32 H 0.05 0.84 7.09 -51.93 -0.37 0.47 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.73 6.91 -51.93 -0.36 0.38 16 35 H 0.06 0.94 4.43 -51.93 -0.23 0.71 16 36 H 0.10 1.49 8.09 -51.93 -0.42 1.07 16 37 H 0.10 1.53 5.82 -51.93 -0.30 1.22 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.09 1.21 7.10 -51.93 -0.37 0.84 16 LS Contribution 289.97 15.07 4.37 4.37 Total: -1.00 -26.81 289.97 -7.81 -34.62 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.50 Total: 8.26 kcal Atomic # 6 Polarization: -23.87 SS G_CDS: -0.73 Total: -24.60 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.07 Total: -39.04 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.81 -7.81 -34.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.799 kcal (2) G-P(sol) polarization free energy of solvation -26.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds