Wall clock time and date at job start Mon Mar 30 2020 02:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47139 * 2 1 4 4 H 1.09006 * 109.47394 * 55.60585 * 3 2 1 5 5 C 1.50698 * 109.47453 * 175.60892 * 3 2 1 6 6 H 1.07996 * 120.00584 * 119.99705 * 5 3 2 7 7 C 1.37880 * 119.99558 * 299.99912 * 5 3 2 8 8 N 1.31512 * 120.00343 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99757 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47057 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47155 * 120.00323 * 9 7 5 12 12 H 1.48501 * 109.47169 * 240.00400 * 9 7 5 13 13 N 1.46898 * 109.47453 * 295.60780 * 3 2 1 14 14 C 1.46898 * 111.00556 * 149.98536 * 13 3 2 15 15 C 1.52998 * 109.46908 * 54.48220 * 14 13 3 16 16 C 1.53005 * 109.47316 * 294.48467 * 14 13 3 17 17 C 1.53001 * 109.46665 * 297.48871 * 16 14 13 18 18 C 1.52998 * 109.47465 * 174.48228 * 14 13 3 19 19 C 1.53003 * 117.50108 * 243.62386 * 18 14 13 20 20 C 1.53000 * 59.99967 * 252.51292 * 19 18 14 21 21 H 1.09001 * 109.47230 * 305.88882 * 1 2 3 22 22 H 1.09003 * 109.47374 * 65.89316 * 1 2 3 23 23 H 1.09001 * 109.47174 * 185.89572 * 1 2 3 24 24 H 1.08999 * 109.47093 * 240.00359 * 2 1 3 25 25 H 1.08998 * 109.47432 * 120.00042 * 2 1 3 26 26 H 0.97000 * 119.99947 * 179.97438 * 8 7 5 27 27 H 1.00906 * 110.99860 * 26.02932 * 13 3 2 28 28 H 1.09003 * 109.47309 * 59.66995 * 15 14 13 29 29 H 1.09001 * 109.47560 * 179.66990 * 15 14 13 30 30 H 1.08999 * 109.47246 * 299.66982 * 15 14 13 31 31 H 1.09007 * 109.46639 * 57.48407 * 16 14 13 32 32 H 1.08994 * 109.46917 * 177.48665 * 16 14 13 33 33 H 1.09001 * 109.46278 * 185.10818 * 17 16 14 34 34 H 1.08993 * 109.47320 * 305.10667 * 17 16 14 35 35 H 1.08996 * 109.47448 * 65.11220 * 17 16 14 36 36 H 1.09006 * 115.55036 * 29.33369 * 18 14 13 37 37 H 1.08997 * 117.49604 * 0.02562 * 19 18 14 38 38 H 1.08998 * 117.49681 * 145.01644 * 19 18 14 39 39 H 1.09009 * 117.49545 * 252.51101 * 20 19 18 40 40 H 1.08992 * 117.50373 * 107.48831 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6138 1.9786 0.8480 5 6 3.5430 1.4439 0.1088 6 1 4.1406 1.8912 -0.6717 7 6 4.1554 0.8741 1.2049 8 7 3.4278 0.3290 2.1552 9 14 6.0186 0.8753 1.3394 10 1 6.6004 1.5447 0.1485 11 1 6.4258 1.6066 2.5661 12 1 6.5106 -0.5240 1.4110 13 7 1.6389 2.1037 -1.2489 14 6 1.4464 3.5454 -1.0431 15 6 2.7112 4.1458 -0.4262 16 6 0.2623 3.7726 -0.1011 17 6 -1.0139 3.2277 -0.7457 18 6 1.1652 4.2195 -2.3875 19 6 2.1825 5.2462 -2.8895 20 6 0.8194 5.7099 -2.3718 21 1 -0.3634 0.6024 0.8326 22 1 -0.3634 0.4197 -0.9380 23 1 -0.3633 -1.0222 0.1056 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.8587 -0.0722 2.9261 27 1 0.8077 1.6790 -1.6321 28 1 3.5560 3.9789 -1.0946 29 1 2.5706 5.2167 -0.2789 30 1 2.9083 3.6697 0.5343 31 1 0.4430 3.2549 0.8410 32 1 0.1472 4.8400 0.0870 33 1 -1.8705 3.4699 -0.1167 34 1 -1.1458 3.6795 -1.7288 35 1 -0.9346 2.1457 -0.8507 36 1 0.6700 3.5957 -3.1317 37 1 3.0523 5.4411 -2.2622 38 1 2.3569 5.2979 -3.9642 39 1 0.0970 6.0666 -3.1061 40 1 0.7922 6.2100 -1.4038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691614062.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:19 Heat of formation + Delta-G solvation = 0.230342 kcal Electronic energy + Delta-G solvation = -17101.998780 eV Core-core repulsion = 14723.584134 eV Total energy + Delta-G solvation = -2378.414645 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.52404 -37.36243 -34.76205 -33.38505 -31.90843 -29.50540 -28.46188 -25.07318 -24.72753 -23.51481 -22.81390 -21.14069 -19.08422 -18.23046 -17.37121 -16.65007 -16.09259 -15.60414 -15.47356 -14.70303 -14.58236 -14.35311 -13.75922 -13.58317 -13.18062 -12.95123 -12.85435 -12.72898 -12.59940 -12.39150 -12.23594 -11.91221 -11.81917 -11.77659 -11.53089 -11.42589 -11.15307 -10.94420 -10.90029 -10.54013 -10.35084 -8.77642 -7.98844 -6.05958 1.39071 1.42474 1.52944 2.47339 3.04791 3.26040 3.67245 3.98533 4.12145 4.23954 4.30287 4.41924 4.51205 4.53323 4.58364 4.62754 4.74589 4.84887 4.90471 4.92649 5.04175 5.05467 5.14419 5.18220 5.24852 5.28462 5.39784 5.41195 5.42172 5.47997 5.58647 5.71603 5.76166 5.88588 5.98653 6.47337 6.72211 7.07356 7.15229 7.60147 9.03911 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025823 B = 0.010347 C = 0.008147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.032327 B = 2705.327264 C = 3435.919951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.227 3.773 4 H -0.013 1.013 5 C -0.485 4.485 6 H 0.048 0.952 7 C 0.006 3.994 8 N -0.922 5.922 9 Si 0.943 3.057 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.151 3.849 15 C -0.123 4.123 16 C -0.145 4.145 17 C -0.150 4.150 18 C -0.137 4.137 19 C -0.187 4.187 20 C -0.163 4.163 21 H 0.037 0.963 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.256 0.744 27 H 0.326 0.674 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.289 7.588 -7.092 12.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.118 3.882 4 H 0.004 0.996 5 C -0.524 4.524 6 H 0.066 0.934 7 C -0.191 4.191 8 N -0.564 5.564 9 Si 0.771 3.229 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.310 5.310 14 C 0.060 3.940 15 C -0.181 4.181 16 C -0.184 4.184 17 C -0.207 4.207 18 C -0.156 4.156 19 C -0.224 4.224 20 C -0.200 4.200 21 H 0.056 0.944 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.065 0.935 27 H 0.145 0.855 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.605 7.559 -7.161 12.330 hybrid contribution 0.471 -0.385 1.074 1.234 sum -6.134 7.174 -6.087 11.232 Atomic orbital electron populations 1.21827 0.96428 1.00806 1.00448 1.21664 0.94125 0.99828 1.00899 1.18922 0.93562 0.89833 0.85839 0.99577 1.21511 0.92887 1.34239 1.03739 0.93360 1.25577 1.01345 0.96097 0.96067 1.70002 1.35694 1.40453 1.10239 0.85723 0.82210 0.77389 0.77603 1.19639 1.21160 1.21079 1.60752 1.38375 1.01871 1.30028 1.20274 0.92967 0.88480 0.92287 1.21877 0.97341 0.98284 1.00577 1.22139 0.96452 1.01019 0.98794 1.21844 0.96398 1.01109 1.01354 1.22105 1.04291 0.91572 0.97632 1.23123 0.93850 1.04112 1.01283 1.22983 0.98488 0.95731 1.02819 0.94394 0.92183 0.92856 0.95001 0.91620 0.93497 0.85450 0.93619 0.92789 0.94036 0.94611 0.91420 0.92351 0.91132 0.93054 0.87973 0.89325 0.88314 0.87272 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.15 8.83 71.98 0.64 -4.51 16 2 C -0.13 -5.96 5.33 30.59 0.16 -5.80 16 3 C 0.23 11.06 1.37 44.17 0.06 11.12 16 4 H -0.01 -0.71 5.37 -2.38 -0.01 -0.72 16 5 C -0.48 -26.54 6.49 25.60 0.17 -26.37 16 6 H 0.05 2.73 7.13 -2.91 -0.02 2.71 16 7 C 0.01 0.34 5.29 84.66 0.45 0.79 16 8 N -0.92 -53.31 11.29 21.45 0.24 -53.07 16 9 Si 0.94 44.87 29.54 68.60 2.03 46.89 16 10 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 N -0.68 -27.83 5.93 -452.10 -2.68 -30.51 16 14 C 0.15 5.36 0.56 3.53 0.00 5.37 16 15 C -0.12 -4.86 5.89 71.98 0.42 -4.44 16 16 C -0.14 -4.78 4.61 30.60 0.14 -4.64 16 17 C -0.15 -4.11 9.32 71.98 0.67 -3.44 16 18 C -0.14 -3.96 4.05 -10.79 -0.04 -4.00 16 19 C -0.19 -4.93 9.50 30.60 0.29 -4.64 16 20 C -0.16 -3.76 9.42 30.59 0.29 -3.47 16 21 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.96 5.14 -2.39 -0.01 1.95 16 23 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 3.55 5.96 -2.39 -0.01 3.54 16 26 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 27 H 0.33 12.19 5.09 -89.69 -0.46 11.74 16 28 H 0.04 1.89 6.75 -2.39 -0.02 1.88 16 29 H 0.05 1.81 7.15 -2.39 -0.02 1.79 16 30 H 0.04 1.94 5.87 -2.39 -0.01 1.93 16 31 H 0.04 1.42 6.16 -2.38 -0.01 1.41 16 32 H 0.07 2.01 7.09 -2.39 -0.02 1.99 16 33 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.70 6.91 -2.39 -0.02 1.68 16 35 H 0.05 1.49 4.43 -2.39 -0.01 1.48 16 36 H 0.10 2.85 8.09 -2.38 -0.02 2.83 16 37 H 0.09 2.55 5.82 -2.39 -0.01 2.54 16 38 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.11 2.03 8.14 -2.38 -0.02 2.02 16 40 H 0.09 2.11 7.10 -2.39 -0.02 2.09 16 Total: -1.00 -58.82 289.97 3.40 -55.43 By element: Atomic # 1 Polarization: 24.74 SS G_CDS: 0.56 Total: 25.30 kcal Atomic # 6 Polarization: -47.30 SS G_CDS: 3.25 Total: -44.05 kcal Atomic # 7 Polarization: -81.14 SS G_CDS: -2.44 Total: -83.58 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -58.82 3.40 -55.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691614062.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.656 kcal (2) G-P(sol) polarization free energy of solvation -58.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds