Wall clock time and date at job start Mon Mar 30 2020 02:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 H 1.09000 * 109.47152 * 185.18498 * 3 2 1 5 5 C 1.50703 * 109.47151 * 305.18468 * 3 2 1 6 6 H 1.07992 * 120.00315 * 119.99681 * 5 3 2 7 7 C 1.37877 * 119.99758 * 299.99804 * 5 3 2 8 8 N 1.31516 * 120.00034 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 120.00172 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47270 * 89.99880 * 9 7 5 11 11 H 1.48504 * 109.47185 * 210.00251 * 9 7 5 12 12 H 1.48500 * 109.46779 * 329.99798 * 9 7 5 13 13 N 1.46903 * 109.46946 * 65.18180 * 3 2 1 14 14 C 1.46899 * 110.99518 * 86.69461 * 13 3 2 15 15 C 1.53000 * 109.46630 * 174.05997 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 C 1.52998 * 109.47274 * 64.99986 * 15 14 13 18 18 C 1.53003 * 109.47429 * 185.00333 * 15 14 13 19 19 C 1.53775 * 113.61762 * 159.13673 * 18 15 14 20 20 C 1.53954 * 87.01893 * 220.04800 * 19 18 15 21 21 C 1.53776 * 87.11027 * 25.36436 * 20 19 18 22 22 H 1.09005 * 109.46955 * 174.88918 * 1 2 3 23 23 H 1.08994 * 109.47524 * 54.89277 * 1 2 3 24 24 H 1.08994 * 109.46910 * 294.89141 * 1 2 3 25 25 H 1.09000 * 109.47079 * 120.00471 * 2 1 3 26 26 H 1.09001 * 109.46964 * 240.00066 * 2 1 3 27 27 H 0.96999 * 120.00310 * 179.97438 * 8 7 5 28 28 H 1.00901 * 111.00040 * 322.74102 * 13 3 2 29 29 H 1.08995 * 109.47219 * 294.05698 * 14 13 3 30 30 H 1.08999 * 109.47280 * 54.06374 * 14 13 3 31 31 H 1.09000 * 109.47425 * 299.99738 * 17 15 14 32 32 H 1.09000 * 109.46983 * 59.99906 * 17 15 14 33 33 H 1.09002 * 109.47556 * 179.97438 * 17 15 14 34 34 H 1.09003 * 112.84661 * 290.33329 * 18 15 14 35 35 H 1.09000 * 113.61251 * 334.56525 * 19 18 15 36 36 H 1.08999 * 113.61254 * 105.47062 * 19 18 15 37 37 H 1.08997 * 113.53724 * 270.81238 * 20 19 18 38 38 H 1.08998 * 113.74409 * 139.94578 * 20 19 18 39 39 H 1.09008 * 113.61341 * 220.08913 * 21 20 19 40 40 H 1.09001 * 113.61955 * 89.19268 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0929 5 6 1.4356 2.1890 -1.1612 6 1 0.8265 3.0629 -0.9833 7 6 1.6603 1.7563 -2.4509 8 7 1.1324 2.4075 -3.4644 9 14 2.7132 0.2443 -2.7588 10 1 1.8519 -0.9653 -2.7676 11 1 3.3960 0.3754 -4.0711 12 1 3.7289 0.1210 -1.6826 13 7 1.6552 2.0979 1.2571 14 6 2.6536 1.8519 2.3061 15 6 2.2971 2.6673 3.5507 16 1 2.2004 3.7189 3.2806 17 6 0.9720 2.1649 4.1273 18 6 3.4015 2.5092 4.5977 19 6 3.4237 3.6352 5.6447 20 6 4.9593 3.5870 5.5466 21 6 4.7732 3.0221 4.1285 22 1 -0.3633 -1.0236 -0.0916 23 1 -0.3634 0.5910 -0.8406 24 1 -0.3633 0.4325 0.9322 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.2907 2.1033 -4.3717 28 1 0.7379 1.8003 1.5540 29 1 2.6632 0.7913 2.5571 30 1 3.6389 2.1492 1.9469 31 1 0.1852 2.2777 3.3815 32 1 1.0687 1.1133 4.3973 33 1 0.7182 2.7455 5.0142 34 1 3.4340 1.5095 5.0309 35 1 2.9926 4.5709 5.2887 36 1 3.0378 3.3336 6.6185 37 1 5.4179 2.8826 6.2405 38 1 5.4315 4.5692 5.5668 39 1 5.4753 2.2262 3.8799 40 1 4.7119 3.7898 3.3571 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692906709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:59 Heat of formation + Delta-G solvation = 2.823706 kcal Electronic energy + Delta-G solvation = -16250.386124 eV Core-core repulsion = 13872.083936 eV Total energy + Delta-G solvation = -2378.302189 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.21673 -36.84595 -33.89028 -31.81460 -30.16390 -26.95586 -26.17190 -25.25234 -23.72256 -23.11933 -20.19571 -19.43720 -19.29825 -16.45066 -15.48412 -15.36499 -15.03104 -14.66807 -13.70178 -13.35397 -13.20003 -13.04827 -12.53997 -12.47288 -12.37882 -12.17033 -11.77166 -11.67545 -11.16533 -10.89537 -10.80146 -10.63183 -10.54066 -10.40308 -10.30142 -9.91124 -9.89546 -9.72473 -9.29973 -9.05220 -8.49441 -7.31021 -6.00406 -3.95532 3.28586 3.38269 3.40373 4.44453 4.61270 4.69758 4.76457 4.89484 5.22115 5.30214 5.35159 5.52493 5.58004 5.67490 5.75642 5.83690 5.88189 5.91148 5.97223 6.01478 6.04709 6.09190 6.13221 6.21744 6.34498 6.36606 6.45367 6.57502 6.58683 6.73458 6.83442 6.89482 7.05766 7.30666 7.78968 8.00684 8.43760 8.76563 9.11588 9.63259 11.13153 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036798 B = 0.006474 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.723712 B = 4323.958166 C = 4562.851970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.158 4.158 3 C 0.185 3.815 4 H 0.031 0.969 5 C -0.488 4.488 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.902 5.902 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.673 5.673 14 C 0.064 3.936 15 C -0.079 4.079 16 H 0.078 0.922 17 C -0.145 4.145 18 C -0.103 4.103 19 C -0.135 4.135 20 C -0.145 4.145 21 C -0.137 4.137 22 H 0.029 0.971 23 H 0.081 0.919 24 H 0.040 0.960 25 H 0.031 0.969 26 H 0.047 0.953 27 H 0.262 0.738 28 H 0.330 0.670 29 H 0.014 0.986 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.972 -1.613 16.148 16.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.197 4.197 3 C 0.076 3.924 4 H 0.049 0.951 5 C -0.526 4.526 6 H 0.099 0.901 7 C -0.133 4.133 8 N -0.542 5.542 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.304 5.304 14 C -0.066 4.066 15 C -0.098 4.098 16 H 0.097 0.903 17 C -0.203 4.203 18 C -0.122 4.122 19 C -0.172 4.172 20 C -0.182 4.182 21 C -0.175 4.175 22 H 0.048 0.952 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.050 0.950 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.150 0.850 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.219 -0.989 15.765 16.350 hybrid contribution 0.431 -1.977 -0.117 2.027 sum 4.650 -2.966 15.648 16.591 Atomic orbital electron populations 1.21646 0.95829 0.99526 1.02453 1.22491 0.97234 1.01177 0.98791 1.19700 0.95831 0.88138 0.88771 0.95124 1.20928 1.30946 1.12620 0.88120 0.90080 1.24897 0.95578 0.96592 0.96200 1.69883 1.45172 1.40327 0.98776 0.86973 0.81186 0.83962 0.76772 1.20702 1.22495 1.19593 1.60638 1.04091 1.62607 1.03046 1.21949 0.97056 0.95951 0.91693 1.21150 0.93760 1.01057 0.93789 0.90314 1.21795 0.97697 1.00238 1.00521 1.22557 0.95081 0.98306 0.96290 1.22960 0.96068 0.99285 0.98911 1.22845 0.96646 1.00962 0.97748 1.22932 0.97110 1.00762 0.96657 0.95167 0.90022 0.94111 0.94990 0.93434 0.92797 0.85046 0.96823 0.91645 0.92159 0.93486 0.93183 0.89890 0.90088 0.92065 0.90724 0.91801 0.91878 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.41 37.16 0.35 -2.44 16 2 C -0.16 -3.44 5.22 -26.73 -0.14 -3.58 16 3 C 0.18 4.37 1.93 -68.86 -0.13 4.24 16 4 H 0.03 0.77 6.74 -51.93 -0.35 0.42 16 5 C -0.49 -13.61 7.84 -34.44 -0.27 -13.88 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 7 C 0.07 1.96 5.42 -17.82 -0.10 1.86 16 8 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 9 Si 0.88 22.11 24.32 -169.99 -4.13 17.97 16 10 H -0.28 -6.87 6.92 56.52 0.39 -6.48 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.57 6.53 56.52 0.37 -6.20 16 13 N -0.67 -13.73 6.18 -107.95 -0.67 -14.39 16 14 C 0.06 1.08 4.87 -3.82 -0.02 1.06 16 15 C -0.08 -1.10 2.32 -90.62 -0.21 -1.31 16 16 H 0.08 1.19 7.98 -51.93 -0.41 0.78 16 17 C -0.15 -1.86 8.94 37.16 0.33 -1.53 16 18 C -0.10 -1.22 3.11 -89.81 -0.28 -1.50 16 19 C -0.13 -1.40 7.63 -25.83 -0.20 -1.60 16 20 C -0.14 -1.44 8.09 -25.83 -0.21 -1.65 16 21 C -0.14 -1.60 6.66 -25.92 -0.17 -1.77 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.08 1.89 6.85 -51.93 -0.36 1.54 16 24 H 0.04 0.74 6.63 -51.93 -0.34 0.39 16 25 H 0.03 0.62 7.57 -51.93 -0.39 0.23 16 26 H 0.05 1.10 3.42 -51.93 -0.18 0.92 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.33 6.39 5.10 -39.29 -0.20 6.19 16 29 H 0.01 0.23 7.61 -51.93 -0.39 -0.16 16 30 H 0.07 1.16 7.09 -51.93 -0.37 0.79 16 31 H 0.06 0.83 6.82 -51.93 -0.35 0.47 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.86 7.99 -51.93 -0.41 0.44 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 299.84 15.07 4.52 4.52 Total: -1.00 -29.08 299.84 -7.72 -36.80 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.17 Total: 4.02 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -1.04 Total: -22.09 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.11 Total: -41.23 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.13 Total: 17.97 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.08 -7.72 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692906709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.626 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds