Wall clock time and date at job start Mon Mar 30 2020 02:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 H 1.09000 * 109.47152 * 185.18498 * 3 2 1 5 5 C 1.50703 * 109.47151 * 305.18468 * 3 2 1 6 6 H 1.07992 * 120.00315 * 119.99681 * 5 3 2 7 7 C 1.37877 * 119.99758 * 299.99804 * 5 3 2 8 8 N 1.31516 * 120.00034 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 120.00172 * 0.02562 * 7 5 3 10 10 H 1.48493 * 109.47270 * 89.99880 * 9 7 5 11 11 H 1.48504 * 109.47185 * 210.00251 * 9 7 5 12 12 H 1.48500 * 109.46779 * 329.99798 * 9 7 5 13 13 N 1.46903 * 109.46946 * 65.18180 * 3 2 1 14 14 C 1.46899 * 110.99518 * 86.69461 * 13 3 2 15 15 C 1.53000 * 109.46630 * 174.05997 * 14 13 3 16 16 H 1.09006 * 109.47122 * 305.00479 * 15 14 13 17 17 C 1.52998 * 109.47274 * 64.99986 * 15 14 13 18 18 C 1.53003 * 109.47429 * 185.00333 * 15 14 13 19 19 C 1.53775 * 113.61762 * 159.13673 * 18 15 14 20 20 C 1.53954 * 87.01893 * 220.04800 * 19 18 15 21 21 C 1.53776 * 87.11027 * 25.36436 * 20 19 18 22 22 H 1.09005 * 109.46955 * 174.88918 * 1 2 3 23 23 H 1.08994 * 109.47524 * 54.89277 * 1 2 3 24 24 H 1.08994 * 109.46910 * 294.89141 * 1 2 3 25 25 H 1.09000 * 109.47079 * 120.00471 * 2 1 3 26 26 H 1.09001 * 109.46964 * 240.00066 * 2 1 3 27 27 H 0.96999 * 120.00310 * 179.97438 * 8 7 5 28 28 H 1.00901 * 111.00040 * 322.74102 * 13 3 2 29 29 H 1.08995 * 109.47219 * 294.05698 * 14 13 3 30 30 H 1.08999 * 109.47280 * 54.06374 * 14 13 3 31 31 H 1.09000 * 109.47425 * 299.99738 * 17 15 14 32 32 H 1.09000 * 109.46983 * 59.99906 * 17 15 14 33 33 H 1.09002 * 109.47556 * 179.97438 * 17 15 14 34 34 H 1.09003 * 112.84661 * 290.33329 * 18 15 14 35 35 H 1.09000 * 113.61251 * 334.56525 * 19 18 15 36 36 H 1.08999 * 113.61254 * 105.47062 * 19 18 15 37 37 H 1.08997 * 113.53724 * 270.81238 * 20 19 18 38 38 H 1.08998 * 113.74409 * 139.94578 * 20 19 18 39 39 H 1.09008 * 113.61341 * 220.08913 * 21 20 19 40 40 H 1.09001 * 113.61955 * 89.19268 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0929 5 6 1.4356 2.1890 -1.1612 6 1 0.8265 3.0629 -0.9833 7 6 1.6603 1.7563 -2.4509 8 7 1.1324 2.4075 -3.4644 9 14 2.7132 0.2443 -2.7588 10 1 1.8519 -0.9653 -2.7676 11 1 3.3960 0.3754 -4.0711 12 1 3.7289 0.1210 -1.6826 13 7 1.6552 2.0979 1.2571 14 6 2.6536 1.8519 2.3061 15 6 2.2971 2.6673 3.5507 16 1 2.2004 3.7189 3.2806 17 6 0.9720 2.1649 4.1273 18 6 3.4015 2.5092 4.5977 19 6 3.4237 3.6352 5.6447 20 6 4.9593 3.5870 5.5466 21 6 4.7732 3.0221 4.1285 22 1 -0.3633 -1.0236 -0.0916 23 1 -0.3634 0.5910 -0.8406 24 1 -0.3633 0.4325 0.9322 25 1 1.8934 -0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.2907 2.1033 -4.3717 28 1 0.7379 1.8003 1.5540 29 1 2.6632 0.7913 2.5571 30 1 3.6389 2.1492 1.9469 31 1 0.1852 2.2777 3.3815 32 1 1.0687 1.1133 4.3973 33 1 0.7182 2.7455 5.0142 34 1 3.4340 1.5095 5.0309 35 1 2.9926 4.5709 5.2887 36 1 3.0378 3.3336 6.6185 37 1 5.4179 2.8826 6.2405 38 1 5.4315 4.5692 5.5668 39 1 5.4753 2.2262 3.8799 40 1 4.7119 3.7898 3.3571 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692906709.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:58 Heat of formation + Delta-G solvation = -15.160588 kcal Electronic energy + Delta-G solvation = -16251.165982 eV Core-core repulsion = 13872.083936 eV Total energy + Delta-G solvation = -2379.082046 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.21456 -38.46832 -35.34435 -33.83414 -31.65124 -28.77992 -27.30771 -26.14255 -25.20905 -24.78657 -21.53240 -21.07008 -20.23501 -18.49352 -17.07918 -16.82128 -16.18156 -16.00756 -15.18253 -15.05282 -14.77494 -14.49459 -14.27512 -13.87440 -13.39173 -13.25371 -13.01447 -12.88409 -12.67442 -12.54600 -12.48192 -12.26011 -11.83542 -11.71324 -11.62656 -11.31331 -11.24992 -11.17167 -10.86036 -10.75232 -10.61936 -8.95269 -8.23800 -6.22913 1.28691 1.33748 1.42803 2.33424 3.10858 3.46397 3.77822 3.85066 3.97378 4.04354 4.20326 4.26905 4.31825 4.41352 4.49409 4.53733 4.71759 4.78277 4.88173 4.91044 4.95513 4.97597 5.03392 5.06773 5.11445 5.13588 5.15637 5.23230 5.27906 5.40557 5.45090 5.52081 5.58095 5.73045 5.77039 6.09691 6.75044 6.81072 6.85183 7.40449 8.93698 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.036798 B = 0.006474 C = 0.006135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.723712 B = 4323.958166 C = 4562.851970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.156 4.156 3 C 0.189 3.811 4 H 0.020 0.980 5 C -0.485 4.485 6 H 0.035 0.965 7 C 0.014 3.986 8 N -0.951 5.951 9 Si 0.941 3.059 10 H -0.266 1.266 11 H -0.300 1.300 12 H -0.255 1.255 13 N -0.685 5.685 14 C 0.066 3.934 15 C -0.072 4.072 16 H 0.061 0.939 17 C -0.142 4.142 18 C -0.102 4.102 19 C -0.130 4.130 20 C -0.136 4.136 21 C -0.146 4.146 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.263 0.737 28 H 0.337 0.663 29 H 0.024 0.976 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 -3.412 18.555 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.079 3.921 4 H 0.038 0.962 5 C -0.524 4.524 6 H 0.054 0.946 7 C -0.183 4.183 8 N -0.593 5.593 9 Si 0.769 3.231 10 H -0.192 1.192 11 H -0.228 1.228 12 H -0.179 1.179 13 N -0.317 5.317 14 C -0.063 4.063 15 C -0.091 4.091 16 H 0.079 0.921 17 C -0.199 4.199 18 C -0.121 4.121 19 C -0.168 4.168 20 C -0.173 4.173 21 C -0.183 4.183 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.157 0.843 29 H 0.042 0.958 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.010 -2.790 18.208 19.089 hybrid contribution 0.146 -1.315 -0.825 1.559 sum 5.156 -4.105 17.382 18.590 Atomic orbital electron populations 1.21570 0.94923 1.00632 1.01877 1.22409 0.98064 0.99374 0.99623 1.19466 0.94631 0.89272 0.88702 0.96245 1.21125 1.29799 1.11389 0.90054 0.94635 1.25660 0.96978 0.99729 0.95892 1.70037 1.47351 1.42559 0.99319 0.85971 0.79876 0.80509 0.76730 1.19228 1.22797 1.17927 1.60492 1.05317 1.62784 1.03084 1.21995 0.95488 0.97079 0.91766 1.21068 0.95465 0.99414 0.93160 0.92051 1.21763 0.96324 1.01124 1.00696 1.22564 0.94004 0.99437 0.96077 1.22930 0.96447 0.98372 0.99012 1.22830 0.96505 1.01489 0.96509 1.22952 0.97347 1.00554 0.97487 0.92556 0.93744 0.92212 0.92004 0.94518 0.92780 0.84324 0.95770 0.92837 0.93514 0.92467 0.91509 0.88851 0.90623 0.90544 0.89299 0.91307 0.91836 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.14 9.41 71.98 0.68 -4.47 16 2 C -0.16 -6.42 5.22 30.60 0.16 -6.26 16 3 C 0.19 8.85 1.93 44.17 0.09 8.93 16 4 H 0.02 0.96 6.74 -2.39 -0.02 0.95 16 5 C -0.48 -27.81 7.84 25.60 0.20 -27.61 16 6 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 7 C 0.01 0.81 5.42 84.65 0.46 1.27 16 8 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 9 Si 0.94 45.56 24.32 68.60 1.67 47.23 16 10 H -0.27 -12.23 6.92 99.48 0.69 -11.54 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 12 H -0.25 -11.58 6.53 99.48 0.65 -10.93 16 13 N -0.68 -27.62 6.18 -495.45 -3.06 -30.68 16 14 C 0.07 2.16 4.87 86.30 0.42 2.58 16 15 C -0.07 -1.90 2.32 -10.79 -0.03 -1.93 16 16 H 0.06 1.83 7.98 -2.38 -0.02 1.81 16 17 C -0.14 -3.30 8.94 71.98 0.64 -2.65 16 18 C -0.10 -2.17 3.11 -10.27 -0.03 -2.20 16 19 C -0.13 -2.36 7.63 31.18 0.24 -2.12 16 20 C -0.14 -2.36 8.09 31.18 0.25 -2.11 16 21 C -0.15 -3.19 6.66 31.12 0.21 -2.98 16 22 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 23 H 0.04 2.05 6.85 -2.39 -0.02 2.03 16 24 H 0.06 2.05 6.63 -2.39 -0.02 2.03 16 25 H 0.06 2.19 7.57 -2.39 -0.02 2.17 16 26 H 0.04 1.59 3.42 -2.39 -0.01 1.59 16 27 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.34 12.71 5.10 -89.69 -0.46 12.25 16 29 H 0.02 0.75 7.61 -2.39 -0.02 0.73 16 30 H 0.05 1.86 7.09 -2.39 -0.02 1.85 16 31 H 0.05 1.21 6.82 -2.39 -0.02 1.19 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.08 1.46 7.99 -2.39 -0.02 1.44 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 Total: -1.00 -63.81 299.84 2.65 -61.17 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.45 Total: 21.64 kcal Atomic # 6 Polarization: -42.83 SS G_CDS: 3.29 Total: -39.54 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -2.76 Total: -90.49 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.23 kcal Total: -63.81 2.65 -61.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692906709.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.006 kcal (2) G-P(sol) polarization free energy of solvation -63.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds