Wall clock time and date at job start Mon Mar 30 2020 02:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47201 * 2 1 4 4 H 1.08998 * 109.46805 * 302.71077 * 3 2 1 5 5 C 1.50697 * 109.47308 * 182.71288 * 3 2 1 6 6 H 1.08007 * 119.99896 * 240.00131 * 5 3 2 7 7 C 1.37876 * 120.00187 * 59.99629 * 5 3 2 8 8 N 1.31508 * 119.99939 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46879 * 90.00267 * 9 7 5 11 11 H 1.48500 * 109.47238 * 210.00125 * 9 7 5 12 12 H 1.48499 * 109.47234 * 330.00484 * 9 7 5 13 13 N 1.46900 * 109.46759 * 62.70960 * 3 2 1 14 14 C 1.46897 * 110.99983 * 63.07975 * 13 3 2 15 15 C 1.46900 * 110.99639 * 187.02970 * 13 3 2 16 16 H 1.08996 * 112.91006 * 288.36517 * 15 13 3 17 17 C 1.53782 * 113.61500 * 59.61900 * 15 13 3 18 18 C 1.53772 * 87.08338 * 139.97977 * 17 15 13 19 19 C 1.53777 * 113.61419 * 157.11338 * 15 13 3 20 20 C 1.53000 * 113.61485 * 334.56764 * 19 15 13 21 21 C 1.53005 * 113.61611 * 105.47083 * 19 15 13 22 22 H 1.08998 * 109.46922 * 64.22698 * 1 2 3 23 23 H 1.09007 * 109.46812 * 184.22378 * 1 2 3 24 24 H 1.08992 * 109.47351 * 304.21870 * 1 2 3 25 25 H 1.09008 * 109.47622 * 239.99731 * 2 1 3 26 26 H 1.09006 * 109.47286 * 120.00139 * 2 1 3 27 27 H 0.97001 * 119.99904 * 180.02562 * 8 7 5 28 28 H 1.09003 * 109.46867 * 179.15588 * 14 13 3 29 29 H 1.09002 * 109.47026 * 299.15227 * 14 13 3 30 30 H 1.09000 * 109.47423 * 59.15140 * 14 13 3 31 31 H 1.09003 * 113.61338 * 254.52695 * 17 15 13 32 32 H 1.09009 * 113.61607 * 25.42707 * 17 15 13 33 33 H 1.08997 * 113.61842 * 89.11647 * 18 17 15 34 34 H 1.09010 * 113.61679 * 220.01800 * 18 17 15 35 35 H 1.09004 * 109.47448 * 65.96101 * 20 19 15 36 36 H 1.09002 * 109.47754 * 185.96307 * 20 19 15 37 37 H 1.09006 * 109.47388 * 305.96233 * 20 19 15 38 38 H 1.08994 * 109.46817 * 60.00462 * 21 19 15 39 39 H 1.09002 * 109.47059 * 180.02562 * 21 19 15 40 40 H 1.08997 * 109.47035 * 300.00172 * 21 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6375 1.9701 -0.8647 5 6 3.5455 1.4431 -0.0672 6 1 4.1213 1.8981 0.7252 7 6 4.1879 0.8626 -1.1403 8 7 3.4868 0.3090 -2.1054 9 14 6.0540 0.8640 -1.2239 10 1 6.5799 -0.3589 -0.5656 11 1 6.4858 0.8861 -2.6446 12 1 6.5798 2.0658 -0.5279 13 7 1.6045 2.1158 1.2309 14 6 2.1884 1.4745 2.4165 15 6 1.9317 3.5473 1.1918 16 1 2.9995 3.7414 1.2924 17 6 1.2771 4.2971 0.0195 18 6 1.0285 5.4543 1.0011 19 6 1.0593 4.4043 2.1242 20 6 -0.3081 3.7866 2.4233 21 6 1.7884 4.8756 3.3841 22 1 -0.3633 0.4468 -0.9254 23 1 -0.3633 -1.0250 0.0757 24 1 -0.3633 0.5779 0.8497 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.9388 -0.0997 -2.8601 28 1 1.8616 2.0019 3.3128 29 1 1.8609 0.4360 2.4662 30 1 3.2758 1.5097 2.3503 31 1 1.9725 4.5463 -0.7821 32 1 0.3625 3.8277 -0.3429 33 1 1.8494 6.1698 1.0497 34 1 0.0565 5.9318 0.8762 35 1 -0.1749 2.8699 2.9979 36 1 -0.9076 4.4921 2.9986 37 1 -0.8162 3.5576 1.4865 38 1 2.6509 5.4786 3.1005 39 1 1.1110 5.4738 3.9935 40 1 2.1224 4.0098 3.9559 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000694308730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:55 Heat of formation + Delta-G solvation = 9.730489 kcal Electronic energy + Delta-G solvation = -17144.407807 eV Core-core repulsion = 14766.405119 eV Total energy + Delta-G solvation = -2378.002688 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.47023 -35.92717 -32.27553 -30.86732 -30.23166 -27.00086 -26.64830 -25.35131 -23.51758 -22.04626 -21.56267 -18.80486 -17.60521 -16.08845 -15.44999 -14.65463 -14.47364 -14.09079 -13.29089 -13.15425 -12.72359 -12.70842 -12.37682 -11.88466 -11.63846 -11.60727 -11.48440 -11.16555 -11.02364 -10.92240 -10.74782 -10.49883 -10.34847 -10.21598 -9.89666 -9.80434 -9.62133 -9.37170 -9.16767 -8.85539 -8.31039 -7.03209 -5.93727 -4.06440 3.27751 3.35188 3.37786 4.42523 4.98535 5.11857 5.17729 5.30454 5.54581 5.57976 5.74683 5.95381 6.02528 6.16127 6.18211 6.21805 6.29402 6.38123 6.39299 6.42064 6.51808 6.58082 6.62333 6.66769 6.73268 6.79520 6.88786 7.06051 7.09485 7.17744 7.26087 7.44190 7.70318 7.82052 8.05931 8.24696 8.42917 8.56978 9.04576 9.60393 11.04971 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.010054 C = 0.008706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.604685 B = 2784.301729 C = 3215.281133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.041 0.959 5 C -0.538 4.538 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.523 5.523 14 C 0.033 3.967 15 C 0.085 3.915 16 H 0.058 0.942 17 C -0.122 4.122 18 C -0.137 4.137 19 C -0.083 4.083 20 C -0.104 4.104 21 C -0.134 4.134 22 H 0.036 0.964 23 H 0.023 0.977 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.039 0.961 29 H 0.056 0.944 30 H 0.028 0.972 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.035 0.965 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.047 0.953 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.913 6.004 6.797 10.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.150 4.150 3 C 0.107 3.893 4 H 0.058 0.942 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.712 3.288 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.246 5.246 14 C -0.116 4.116 15 C -0.025 4.025 16 H 0.075 0.925 17 C -0.160 4.160 18 C -0.175 4.175 19 C -0.083 4.083 20 C -0.161 4.161 21 C -0.191 4.191 22 H 0.056 0.944 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.405 5.854 6.641 10.373 hybrid contribution 2.162 -0.039 -0.219 2.173 sum -3.244 5.815 6.422 9.251 Atomic orbital electron populations 1.21719 0.98968 0.98355 1.00564 1.21603 0.92113 0.99425 1.01842 1.19241 0.92448 0.90760 0.86873 0.94151 1.21743 0.92937 1.37003 1.06002 0.92807 1.24891 0.97659 0.95239 0.95641 1.69872 1.34780 1.37965 1.09866 0.86734 0.86638 0.78289 0.77142 1.20798 1.21261 1.20179 1.62652 1.57275 1.00651 1.04029 1.22181 0.97969 0.98797 0.92665 1.22837 0.95991 0.88909 0.94731 0.92466 1.22806 1.00997 0.95664 0.96516 1.22940 1.00759 0.96260 0.97499 1.21959 0.96715 0.96217 0.93435 1.21286 0.94058 0.99455 1.01343 1.21753 0.99469 1.00459 0.97437 0.94433 0.95800 0.93069 0.89215 0.94990 0.93023 0.94230 0.92496 0.95314 0.92058 0.89975 0.91029 0.92122 0.92154 0.94563 0.92368 0.93194 0.93438 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.84 37.16 0.37 -2.46 16 2 C -0.11 -2.64 5.03 -26.73 -0.13 -2.77 16 3 C 0.21 5.15 1.62 -68.86 -0.11 5.04 16 4 H 0.04 1.09 7.03 -51.93 -0.37 0.72 16 5 C -0.54 -14.30 7.22 -34.44 -0.25 -14.54 16 6 H 0.05 1.46 5.96 -52.48 -0.31 1.14 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.93 11.30 55.43 0.63 -24.30 16 9 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.52 -10.73 3.02 -227.33 -0.69 -11.41 16 14 C 0.03 0.64 8.62 60.06 0.52 1.16 16 15 C 0.08 1.61 2.13 -66.90 -0.14 1.47 16 16 H 0.06 1.22 7.49 -51.93 -0.39 0.83 16 17 C -0.12 -2.20 6.21 -25.92 -0.16 -2.36 16 18 C -0.14 -2.04 7.22 -25.92 -0.19 -2.23 16 19 C -0.08 -1.28 1.02 -153.70 -0.16 -1.44 16 20 C -0.10 -1.55 8.37 37.16 0.31 -1.24 16 21 C -0.13 -1.86 9.19 37.16 0.34 -1.52 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 24 H 0.05 1.00 7.56 -51.93 -0.39 0.61 16 25 H 0.09 2.39 6.00 -51.92 -0.31 2.08 16 26 H 0.03 0.75 6.36 -51.93 -0.33 0.42 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.04 0.68 6.28 -51.93 -0.33 0.36 16 29 H 0.06 1.12 6.36 -51.93 -0.33 0.79 16 30 H 0.03 0.61 6.25 -51.93 -0.32 0.29 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.08 1.52 7.55 -51.92 -0.39 1.13 16 33 H 0.07 1.01 7.96 -51.93 -0.41 0.60 16 34 H 0.06 0.82 8.10 -51.92 -0.42 0.40 16 35 H 0.06 0.94 7.17 -51.93 -0.37 0.57 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.91 7.31 -51.93 -0.38 0.54 16 38 H 0.05 0.68 7.94 -51.93 -0.41 0.27 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 0.76 7.10 -51.93 -0.37 0.39 16 LS Contribution 298.41 15.07 4.50 4.50 Total: -1.00 -26.73 298.41 -7.37 -34.10 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -7.09 Total: 0.01 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 0.30 Total: -19.14 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.06 Total: -35.71 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -26.73 -7.37 -34.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000694308730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.834 kcal (2) G-P(sol) polarization free energy of solvation -26.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds