Wall clock time and date at job start Mon Mar 30 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47189 * 2 1 4 4 C 1.53000 * 109.47167 * 120.00354 * 2 1 3 5 5 C 1.50694 * 109.47059 * 184.99772 * 4 2 1 6 6 H 1.08003 * 120.00648 * 359.97438 * 5 4 2 7 7 C 1.37887 * 119.99818 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00162 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00050 * 180.02562 * 7 5 4 10 10 H 1.48509 * 109.47017 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47222 * 119.99672 * 9 7 5 12 12 H 1.48498 * 109.47356 * 240.00200 * 9 7 5 13 13 N 1.46900 * 109.47154 * 240.00144 * 2 1 3 14 14 C 1.46902 * 111.00373 * 84.18063 * 13 2 1 15 15 H 1.09003 * 109.46754 * 326.32692 * 14 13 2 16 16 C 1.52995 * 109.47266 * 206.32894 * 14 13 2 17 17 C 1.53001 * 109.46832 * 179.97438 * 16 14 13 18 18 C 1.53001 * 109.47277 * 59.99967 * 17 16 14 19 19 C 1.53003 * 109.46810 * 299.99975 * 18 17 16 20 20 H 1.08999 * 109.46795 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47150 * 299.99666 * 19 18 17 22 22 C 1.52994 * 109.46834 * 86.32358 * 14 13 2 23 23 H 1.08994 * 109.47046 * 184.71586 * 1 2 3 24 24 H 1.09004 * 109.46925 * 304.71711 * 1 2 3 25 25 H 1.08998 * 109.46841 * 64.71482 * 1 2 3 26 26 H 1.09000 * 109.47206 * 64.99723 * 4 2 1 27 27 H 1.09002 * 109.46957 * 304.99744 * 4 2 1 28 28 H 0.96999 * 120.00333 * 180.02562 * 8 7 5 29 29 H 1.00900 * 111.00341 * 208.13617 * 13 2 1 30 30 H 1.09003 * 109.47070 * 299.99605 * 16 14 13 31 31 H 1.09002 * 109.47554 * 60.00123 * 16 14 13 32 32 H 1.09003 * 109.47097 * 299.99743 * 17 16 14 33 33 H 1.09003 * 109.47132 * 179.97438 * 17 16 14 34 34 H 1.08997 * 109.47363 * 179.97438 * 18 17 16 35 35 H 1.09003 * 109.47239 * 59.99864 * 18 17 16 36 36 H 1.08994 * 109.47269 * 180.02562 * 21 19 18 37 37 H 1.08997 * 109.47206 * 300.00178 * 21 19 18 38 38 H 1.09002 * 109.47106 * 59.99960 * 21 19 18 39 39 H 1.09005 * 109.47739 * 300.00321 * 22 14 13 40 40 H 1.08994 * 109.47268 * 60.00724 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0791 -0.0863 0.5391 7 6 4.2303 -1.1929 2.3583 8 7 3.5763 -1.8363 3.3005 9 14 6.0920 -1.0605 2.4373 10 1 6.5837 -0.2912 1.2661 11 1 6.4861 -0.3642 3.6884 12 1 6.6862 -2.4213 2.4199 13 7 2.0197 -0.6925 -1.1994 14 6 2.0641 0.2177 -2.3517 15 1 1.2452 0.9336 -2.2809 16 6 1.9261 -0.5888 -3.6444 17 6 1.9717 0.3593 -4.8443 18 6 3.3051 1.1095 -4.8512 19 6 3.4431 1.9161 -3.5583 20 1 4.3929 2.4509 -3.5634 21 6 2.2933 2.9206 -3.4587 22 6 3.3977 0.9675 -2.3581 23 1 -0.3633 -1.0241 0.0845 24 1 -0.3633 0.5853 0.8448 25 1 -0.3633 0.4389 -0.9292 26 1 1.7516 -1.7716 1.2055 27 1 1.6054 -0.2618 2.1369 28 1 4.0606 -2.2425 4.0363 29 1 2.9234 -1.1092 -1.0329 30 1 2.7450 -1.3047 -3.7152 31 1 0.9759 -1.1229 -3.6398 32 1 1.1525 1.0749 -4.7733 33 1 1.8738 -0.2153 -5.7654 34 1 3.3379 1.7847 -5.7063 35 1 4.1243 0.3939 -4.9222 36 1 2.3918 3.4954 -2.5379 37 1 2.3259 3.5960 -4.3135 38 1 1.3433 2.3861 -3.4539 39 1 3.4961 1.5421 -1.4371 40 1 4.2166 0.2516 -2.4289 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695856872.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:02 Heat of formation + Delta-G solvation = -42.234316 kcal Electronic energy + Delta-G solvation = -16521.513135 eV Core-core repulsion = 14141.257084 eV Total energy + Delta-G solvation = -2380.256051 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.19583 -35.93843 -32.78469 -31.67370 -30.81582 -27.38272 -27.04912 -26.61100 -23.11519 -22.13391 -21.12717 -19.35591 -18.40850 -16.31272 -15.82263 -15.03964 -14.47840 -14.36359 -13.79834 -13.46265 -13.39397 -13.14893 -12.55369 -12.26056 -11.77905 -11.63417 -11.61132 -11.38975 -11.24490 -11.11877 -10.84251 -10.73585 -10.68248 -10.57424 -10.32112 -10.13528 -9.84620 -9.70951 -9.17604 -9.01063 -8.37950 -7.50740 -6.00959 -4.03471 3.29331 3.37351 3.40174 4.44423 4.76470 4.85727 4.90984 5.20038 5.35561 5.43056 5.48572 5.51589 5.58997 5.72025 5.80125 5.85375 5.94775 6.02792 6.04568 6.08898 6.16751 6.25624 6.27895 6.35268 6.40202 6.43772 6.51977 6.59900 6.70491 6.74715 6.98888 7.00555 7.60375 7.67977 7.99866 8.14986 8.35974 8.42882 9.03143 9.60496 11.10131 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.007632 C = 0.006689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.445967 B = 3667.920429 C = 4185.279450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.088 3.912 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.680 5.680 14 C 0.088 3.912 15 H 0.070 0.930 16 C -0.106 4.106 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.088 4.088 20 H 0.062 0.938 21 C -0.149 4.149 22 C -0.143 4.143 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.036 0.964 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.260 0.740 29 H 0.353 0.647 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 6.081 -14.075 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.021 4.021 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.559 4.559 6 H 0.071 0.929 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.313 5.313 14 C -0.023 4.023 15 H 0.088 0.912 16 C -0.144 4.144 17 C -0.157 4.157 18 C -0.150 4.150 19 C -0.108 4.108 20 H 0.081 0.919 21 C -0.206 4.206 22 C -0.182 4.182 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.174 0.826 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.068 5.707 -14.045 15.468 hybrid contribution 1.928 0.613 0.445 2.072 sum -1.139 6.320 -13.600 15.040 Atomic orbital electron populations 1.21808 0.96959 1.01245 0.99295 1.21583 0.93100 0.95893 0.91542 0.95401 1.19279 0.95414 0.96153 0.90893 1.21227 0.92244 1.34218 1.08171 0.92874 1.24991 0.98130 0.95277 0.95765 1.69970 1.35337 1.35828 1.11946 0.86607 0.86145 0.77763 0.77902 1.19843 1.21094 1.21001 1.60657 1.34133 1.32389 1.04082 1.21572 0.95768 0.93369 0.91563 0.91152 1.21499 1.02046 0.97588 0.93257 1.21570 0.97520 0.98496 0.98130 1.21555 0.97913 0.98657 0.96912 1.21060 0.98481 0.96068 0.95158 0.91919 1.21927 0.99091 0.98572 1.01052 1.22313 0.99357 0.98823 0.97700 0.92760 0.93561 0.94476 0.95674 0.96209 0.93053 0.82561 0.92282 0.91788 0.92018 0.92522 0.92649 0.92200 0.92922 0.93319 0.92003 0.91766 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.41 37.16 0.35 -2.13 16 2 C 0.09 1.85 2.41 -67.71 -0.16 1.69 16 3 H 0.03 0.60 7.21 -51.93 -0.37 0.23 16 4 C 0.02 0.51 4.58 -27.89 -0.13 0.38 16 5 C -0.52 -14.31 8.12 -34.44 -0.28 -14.58 16 6 H 0.05 1.42 7.47 -52.48 -0.39 1.03 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.68 -13.14 6.06 -99.74 -0.60 -13.75 16 14 C 0.09 1.39 1.98 -67.72 -0.13 1.26 16 15 H 0.07 1.13 5.32 -51.93 -0.28 0.85 16 16 C -0.11 -1.47 5.53 -26.73 -0.15 -1.62 16 17 C -0.12 -1.37 5.65 -26.73 -0.15 -1.52 16 18 C -0.11 -1.28 5.45 -26.73 -0.15 -1.43 16 19 C -0.09 -1.12 3.20 -90.59 -0.29 -1.41 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 21 C -0.15 -1.76 8.50 37.16 0.32 -1.44 16 22 C -0.14 -2.22 4.69 -26.71 -0.13 -2.34 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.04 0.61 7.33 -51.93 -0.38 0.23 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.35 7.48 6.92 -39.29 -0.27 7.20 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 39 H 0.06 1.12 7.52 -51.93 -0.39 0.73 16 40 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 LS Contribution 302.34 15.07 4.56 4.56 Total: -1.00 -28.37 302.34 -8.63 -37.00 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -7.30 Total: 3.16 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -1.00 Total: -21.55 kcal Atomic # 7 Polarization: -39.82 SS G_CDS: 0.13 Total: -39.69 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -28.37 -8.63 -37.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695856872.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.237 kcal (2) G-P(sol) polarization free energy of solvation -28.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds