Wall clock time and date at job start Mon Mar 30 2020 03:29:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 H 1.08999 * 109.46776 * 2 1
4 4 C 1.53002 * 109.46932 * 240.00219 * 2 1 3
5 5 C 1.50702 * 109.46768 * 175.00120 * 4 2 1
6 6 H 1.07995 * 120.00182 * 359.97438 * 5 4 2
7 7 C 1.37877 * 119.99831 * 180.02562 * 5 4 2
8 8 N 1.31512 * 120.00104 * 180.02562 * 7 5 4
9 9 Si 1.86804 * 120.00072 * 359.97438 * 7 5 4
10 10 H 1.48497 * 109.46996 * 90.00389 * 9 7 5
11 11 H 1.48499 * 109.47341 * 210.00734 * 9 7 5
12 12 H 1.48503 * 109.46823 * 330.00418 * 9 7 5
13 13 N 1.46899 * 109.47058 * 120.00035 * 2 1 3
14 14 C 1.46893 * 111.00009 * 274.17066 * 13 2 1
15 15 H 1.09000 * 109.47120 * 345.85716 * 14 13 2
16 16 C 1.52998 * 109.47419 * 105.86301 * 14 13 2
17 17 C 1.53007 * 109.46933 * 180.02562 * 16 14 13
18 18 C 1.52999 * 109.46750 * 299.99473 * 17 16 14
19 19 C 1.52994 * 109.47260 * 60.00333 * 18 17 16
20 20 H 1.09000 * 109.47131 * 59.99880 * 19 18 17
21 21 C 1.53001 * 109.47082 * 179.97438 * 19 18 17
22 22 C 1.52997 * 109.47441 * 299.99784 * 19 18 17
23 23 H 1.09003 * 109.46806 * 61.39272 * 1 2 3
24 24 H 1.08997 * 109.46999 * 181.39215 * 1 2 3
25 25 H 1.08997 * 109.47162 * 301.39661 * 1 2 3
26 26 H 1.09003 * 109.47002 * 55.00123 * 4 2 1
27 27 H 1.09000 * 109.46939 * 294.99994 * 4 2 1
28 28 H 0.97000 * 120.00505 * 179.97438 * 8 7 5
29 29 H 1.00894 * 110.99600 * 150.21335 * 13 2 1
30 30 H 1.09004 * 109.46884 * 299.99499 * 16 14 13
31 31 H 1.09000 * 109.47452 * 59.99618 * 16 14 13
32 32 H 1.09005 * 109.46298 * 180.02562 * 17 16 14
33 33 H 1.08998 * 109.47496 * 60.00042 * 17 16 14
34 34 H 1.09000 * 109.47147 * 300.00223 * 18 17 16
35 35 H 1.08999 * 109.47036 * 180.02562 * 18 17 16
36 36 H 1.09005 * 109.47168 * 180.02562 * 21 19 18
37 37 H 1.08999 * 109.47055 * 299.99918 * 21 19 18
38 38 H 1.08998 * 109.47407 * 60.00399 * 21 19 18
39 39 H 1.09000 * 109.47037 * 300.00154 * 22 19 18
40 40 H 1.08996 * 109.47489 * 179.97438 * 22 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5420 -0.6149 -1.3127
6 1 4.0790 -0.0855 -0.5396
7 6 4.2304 -1.1926 -2.3584
8 7 5.5411 -1.1002 -2.4135
9 14 3.3015 -2.1076 -3.6960
10 1 2.9399 -1.1624 -4.7827
11 1 4.1602 -3.1878 -4.2448
12 1 2.0659 -2.7002 -3.1238
13 7 2.0197 -0.6925 1.1994
14 6 2.1012 0.2272 2.3419
15 1 2.0228 1.2549 1.9873
16 6 0.9571 -0.0653 3.3147
17 6 1.0417 0.8931 4.5044
18 6 2.3807 0.7015 5.2194
19 6 3.5247 0.9940 4.2466
20 1 3.4462 2.0216 3.8917
21 6 4.8637 0.8029 4.9619
22 6 3.4403 0.0357 3.0570
23 1 -0.3633 0.4921 -0.9022
24 1 -0.3633 -1.0273 0.0250
25 1 -0.3633 0.5354 0.8772
26 1 1.6054 -0.2616 -2.1370
27 1 1.7517 -1.7715 -1.2056
28 1 6.0255 -1.5069 -3.1489
29 1 2.9110 -1.1319 1.0246
30 1 0.0032 0.0716 2.8054
31 1 1.0355 -1.0930 3.6693
32 1 0.2268 0.6843 5.1977
33 1 0.9630 1.9207 4.1495
34 1 2.4593 -0.3261 5.5743
35 1 2.4408 1.3840 6.0672
36 1 5.6789 1.0117 4.2689
37 1 4.9237 1.4860 5.8092
38 1 4.9426 -0.2245 5.3171
39 1 3.5188 -0.9919 3.4119
40 1 4.2551 0.2443 2.3637
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000695856886.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:07
Heat of formation + Delta-G solvation = -41.843198 kcal
Electronic energy + Delta-G solvation = -16299.082516 eV
Core-core repulsion = 13918.843425 eV
Total energy + Delta-G solvation = -2380.239091 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-38.90195 -36.04714 -32.84637 -32.02990 -31.10573 -27.91684 -27.26579 -26.16933
-22.78940 -21.87513 -20.55450 -19.83320 -19.03179 -16.78204 -15.27197 -14.97700
-14.57209 -14.28067 -14.13229 -13.94964 -13.19458 -12.96158 -12.35682 -12.22715
-12.14550 -11.86335 -11.68856 -11.43748 -11.42570 -11.27978 -10.88310 -10.79012
-10.65833 -10.52848 -10.22848 -9.97257 -9.84131 -9.67527 -9.31957 -9.17544
-8.55289 -7.63508 -6.06295 -4.04464 3.31140 3.38886 3.44099 4.45073
4.66828 4.85688 4.93388 5.16828 5.31713 5.33384 5.48970 5.58394
5.65336 5.71269 5.80300 5.84754 5.88980 5.93683 5.98874 6.07770
6.13362 6.16282 6.23145 6.30622 6.41121 6.43176 6.46760 6.56129
6.63245 6.70944 6.80403 6.86041 7.20664 7.35036 7.77377 8.01125
8.32438 8.49804 8.95944 9.56746 11.06689
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.032045 B = 0.006999 C = 0.005931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 873.564471 B = 3999.843060 C = 4719.945198
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C 0.097 3.903
3 H 0.034 0.966
4 C -0.018 4.018
5 C -0.522 4.522
6 H 0.069 0.931
7 C 0.069 3.931
8 N -0.902 5.902
9 Si 0.881 3.119
10 H -0.278 1.278
11 H -0.289 1.289
12 H -0.264 1.264
13 N -0.682 5.682
14 C 0.090 3.910
15 H 0.046 0.954
16 C -0.104 4.104
17 C -0.120 4.120
18 C -0.112 4.112
19 C -0.089 4.089
20 H 0.066 0.934
21 C -0.147 4.147
22 C -0.125 4.125
23 H 0.046 0.954
24 H 0.053 0.947
25 H 0.041 0.959
26 H 0.015 0.985
27 H 0.025 0.975
28 H 0.263 0.737
29 H 0.358 0.642
30 H 0.060 0.940
31 H 0.062 0.938
32 H 0.057 0.943
33 H 0.057 0.943
34 H 0.060 0.940
35 H 0.055 0.945
36 H 0.055 0.945
37 H 0.049 0.951
38 H 0.053 0.947
39 H 0.066 0.934
40 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.967 3.300 12.902 15.030
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.012 4.012
3 H 0.052 0.948
4 C -0.056 4.056
5 C -0.560 4.560
6 H 0.087 0.913
7 C -0.133 4.133
8 N -0.541 5.541
9 Si 0.708 3.292
10 H -0.204 1.204
11 H -0.215 1.215
12 H -0.189 1.189
13 N -0.316 5.316
14 C -0.021 4.021
15 H 0.064 0.936
16 C -0.143 4.143
17 C -0.158 4.158
18 C -0.149 4.149
19 C -0.108 4.108
20 H 0.084 0.916
21 C -0.204 4.204
22 C -0.163 4.163
23 H 0.065 0.935
24 H 0.073 0.927
25 H 0.060 0.940
26 H 0.034 0.966
27 H 0.043 0.957
28 H 0.072 0.928
29 H 0.180 0.820
30 H 0.078 0.922
31 H 0.081 0.919
32 H 0.075 0.925
33 H 0.075 0.925
34 H 0.079 0.921
35 H 0.074 0.926
36 H 0.074 0.926
37 H 0.069 0.931
38 H 0.072 0.928
39 H 0.085 0.915
40 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -7.417 2.990 12.944 15.215
hybrid contribution 0.490 0.080 -1.075 1.184
sum -6.926 3.070 11.869 14.081
Atomic orbital electron populations
1.21883 0.96836 1.01248 0.99681 1.21481 0.93159 0.95795 0.90814
0.94801 1.19789 0.96954 0.96259 0.92603 1.21090 0.89925 1.35156
1.09840 0.91263 1.25009 0.94685 0.95698 0.97888 1.69915 1.06588
1.45323 1.32288 0.86764 0.80317 0.79896 0.82224 1.20434 1.21474
1.18863 1.60581 1.35472 1.31226 1.04303 1.21544 0.93663 0.95139
0.91736 0.93572 1.21599 0.98711 0.99064 0.94908 1.21559 0.96846
0.99867 0.97523 1.21583 0.94534 1.01340 0.97472 1.21090 0.94532
0.99663 0.95510 0.91568 1.21826 0.97112 1.01420 1.00032 1.21976
0.97723 0.99673 0.96898 0.93536 0.92740 0.93978 0.96643 0.95690
0.92762 0.81990 0.92175 0.91942 0.92469 0.92462 0.92104 0.92646
0.92588 0.93144 0.92785 0.91550 0.91584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.40 9.39 37.16 0.35 -2.05 16
2 C 0.10 1.98 2.53 -67.71 -0.17 1.81 16
3 H 0.03 0.73 7.35 -51.93 -0.38 0.34 16
4 C -0.02 -0.44 3.64 -27.88 -0.10 -0.54 16
5 C -0.52 -14.54 8.67 -34.44 -0.30 -14.83 16
6 H 0.07 2.06 7.75 -52.49 -0.41 1.65 16
7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16
8 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16
9 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16
10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
12 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16
13 N -0.68 -13.06 6.22 -99.74 -0.62 -13.68 16
14 C 0.09 1.45 2.53 -67.71 -0.17 1.28 16
15 H 0.05 0.79 7.16 -51.93 -0.37 0.42 16
16 C -0.10 -1.46 5.53 -26.73 -0.15 -1.61 16
17 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16
18 C -0.11 -1.26 5.20 -26.73 -0.14 -1.40 16
19 C -0.09 -1.12 2.72 -90.62 -0.25 -1.36 16
20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16
21 C -0.15 -1.67 9.19 37.16 0.34 -1.33 16
22 C -0.12 -1.89 4.32 -26.73 -0.12 -2.00 16
23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16
24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
25 H 0.04 0.66 6.69 -51.93 -0.35 0.31 16
26 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16
27 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16
28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
29 H 0.36 7.63 6.61 -39.29 -0.26 7.37 16
30 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16
31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16
37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16
LS Contribution 304.66 15.07 4.59 4.59
Total: -1.00 -28.70 304.66 -8.42 -37.13
By element:
Atomic # 1 Polarization: 10.85 SS G_CDS: -7.54 Total: 3.31 kcal
Atomic # 6 Polarization: -20.76 SS G_CDS: -0.96 Total: -21.72 kcal
Atomic # 7 Polarization: -40.60 SS G_CDS: 0.15 Total: -40.45 kcal
Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal
Total LS contribution 4.59 Total: 4.59 kcal
Total: -28.70 -8.42 -37.13 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695856886.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -4.714 kcal
(2) G-P(sol) polarization free energy of solvation -28.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.419 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal
(6) G-S(sol) free energy of system = (1) + (5) -41.843 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds