Wall clock time and date at job start Mon Mar 30 2020 03:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46776 * 2 1 4 4 C 1.53002 * 109.46932 * 240.00219 * 2 1 3 5 5 C 1.50702 * 109.46768 * 175.00120 * 4 2 1 6 6 H 1.07995 * 120.00182 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99831 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00104 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00072 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46996 * 90.00389 * 9 7 5 11 11 H 1.48499 * 109.47341 * 210.00734 * 9 7 5 12 12 H 1.48503 * 109.46823 * 330.00418 * 9 7 5 13 13 N 1.46899 * 109.47058 * 120.00035 * 2 1 3 14 14 C 1.46893 * 111.00009 * 274.17066 * 13 2 1 15 15 H 1.09000 * 109.47120 * 345.85716 * 14 13 2 16 16 C 1.52998 * 109.47419 * 105.86301 * 14 13 2 17 17 C 1.53007 * 109.46933 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46750 * 299.99473 * 17 16 14 19 19 C 1.52994 * 109.47260 * 60.00333 * 18 17 16 20 20 H 1.09000 * 109.47131 * 59.99880 * 19 18 17 21 21 C 1.53001 * 109.47082 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47441 * 299.99784 * 19 18 17 23 23 H 1.09003 * 109.46806 * 61.39272 * 1 2 3 24 24 H 1.08997 * 109.46999 * 181.39215 * 1 2 3 25 25 H 1.08997 * 109.47162 * 301.39661 * 1 2 3 26 26 H 1.09003 * 109.47002 * 55.00123 * 4 2 1 27 27 H 1.09000 * 109.46939 * 294.99994 * 4 2 1 28 28 H 0.97000 * 120.00505 * 179.97438 * 8 7 5 29 29 H 1.00894 * 110.99600 * 150.21335 * 13 2 1 30 30 H 1.09004 * 109.46884 * 299.99499 * 16 14 13 31 31 H 1.09000 * 109.47452 * 59.99618 * 16 14 13 32 32 H 1.09005 * 109.46298 * 180.02562 * 17 16 14 33 33 H 1.08998 * 109.47496 * 60.00042 * 17 16 14 34 34 H 1.09000 * 109.47147 * 300.00223 * 18 17 16 35 35 H 1.08999 * 109.47036 * 180.02562 * 18 17 16 36 36 H 1.09005 * 109.47168 * 180.02562 * 21 19 18 37 37 H 1.08999 * 109.47055 * 299.99918 * 21 19 18 38 38 H 1.08998 * 109.47407 * 60.00399 * 21 19 18 39 39 H 1.09000 * 109.47037 * 300.00154 * 22 19 18 40 40 H 1.08996 * 109.47489 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2304 -1.1926 -2.3584 8 7 5.5411 -1.1002 -2.4135 9 14 3.3015 -2.1076 -3.6960 10 1 2.9399 -1.1624 -4.7827 11 1 4.1602 -3.1878 -4.2448 12 1 2.0659 -2.7002 -3.1238 13 7 2.0197 -0.6925 1.1994 14 6 2.1012 0.2272 2.3419 15 1 2.0228 1.2549 1.9873 16 6 0.9571 -0.0653 3.3147 17 6 1.0417 0.8931 4.5044 18 6 2.3807 0.7015 5.2194 19 6 3.5247 0.9940 4.2466 20 1 3.4462 2.0216 3.8917 21 6 4.8637 0.8029 4.9619 22 6 3.4403 0.0357 3.0570 23 1 -0.3633 0.4921 -0.9022 24 1 -0.3633 -1.0273 0.0250 25 1 -0.3633 0.5354 0.8772 26 1 1.6054 -0.2616 -2.1370 27 1 1.7517 -1.7715 -1.2056 28 1 6.0255 -1.5069 -3.1489 29 1 2.9110 -1.1319 1.0246 30 1 0.0032 0.0716 2.8054 31 1 1.0355 -1.0930 3.6693 32 1 0.2268 0.6843 5.1977 33 1 0.9630 1.9207 4.1495 34 1 2.4593 -0.3261 5.5743 35 1 2.4408 1.3840 6.0672 36 1 5.6789 1.0117 4.2689 37 1 4.9237 1.4860 5.8092 38 1 4.9426 -0.2245 5.3171 39 1 3.5188 -0.9919 3.4119 40 1 4.2551 0.2443 2.3637 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695856886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:07 Heat of formation + Delta-G solvation = -41.843198 kcal Electronic energy + Delta-G solvation = -16299.082516 eV Core-core repulsion = 13918.843425 eV Total energy + Delta-G solvation = -2380.239091 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.90195 -36.04714 -32.84637 -32.02990 -31.10573 -27.91684 -27.26579 -26.16933 -22.78940 -21.87513 -20.55450 -19.83320 -19.03179 -16.78204 -15.27197 -14.97700 -14.57209 -14.28067 -14.13229 -13.94964 -13.19458 -12.96158 -12.35682 -12.22715 -12.14550 -11.86335 -11.68856 -11.43748 -11.42570 -11.27978 -10.88310 -10.79012 -10.65833 -10.52848 -10.22848 -9.97257 -9.84131 -9.67527 -9.31957 -9.17544 -8.55289 -7.63508 -6.06295 -4.04464 3.31140 3.38886 3.44099 4.45073 4.66828 4.85688 4.93388 5.16828 5.31713 5.33384 5.48970 5.58394 5.65336 5.71269 5.80300 5.84754 5.88980 5.93683 5.98874 6.07770 6.13362 6.16282 6.23145 6.30622 6.41121 6.43176 6.46760 6.56129 6.63245 6.70944 6.80403 6.86041 7.20664 7.35036 7.77377 8.01125 8.32438 8.49804 8.95944 9.56746 11.06689 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032045 B = 0.006999 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.564471 B = 3999.843060 C = 4719.945198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.097 3.903 3 H 0.034 0.966 4 C -0.018 4.018 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.682 5.682 14 C 0.090 3.910 15 H 0.046 0.954 16 C -0.104 4.104 17 C -0.120 4.120 18 C -0.112 4.112 19 C -0.089 4.089 20 H 0.066 0.934 21 C -0.147 4.147 22 C -0.125 4.125 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.041 0.959 26 H 0.015 0.985 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.358 0.642 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.967 3.300 12.902 15.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.012 4.012 3 H 0.052 0.948 4 C -0.056 4.056 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.316 5.316 14 C -0.021 4.021 15 H 0.064 0.936 16 C -0.143 4.143 17 C -0.158 4.158 18 C -0.149 4.149 19 C -0.108 4.108 20 H 0.084 0.916 21 C -0.204 4.204 22 C -0.163 4.163 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.060 0.940 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.072 0.928 29 H 0.180 0.820 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.417 2.990 12.944 15.215 hybrid contribution 0.490 0.080 -1.075 1.184 sum -6.926 3.070 11.869 14.081 Atomic orbital electron populations 1.21883 0.96836 1.01248 0.99681 1.21481 0.93159 0.95795 0.90814 0.94801 1.19789 0.96954 0.96259 0.92603 1.21090 0.89925 1.35156 1.09840 0.91263 1.25009 0.94685 0.95698 0.97888 1.69915 1.06588 1.45323 1.32288 0.86764 0.80317 0.79896 0.82224 1.20434 1.21474 1.18863 1.60581 1.35472 1.31226 1.04303 1.21544 0.93663 0.95139 0.91736 0.93572 1.21599 0.98711 0.99064 0.94908 1.21559 0.96846 0.99867 0.97523 1.21583 0.94534 1.01340 0.97472 1.21090 0.94532 0.99663 0.95510 0.91568 1.21826 0.97112 1.01420 1.00032 1.21976 0.97723 0.99673 0.96898 0.93536 0.92740 0.93978 0.96643 0.95690 0.92762 0.81990 0.92175 0.91942 0.92469 0.92462 0.92104 0.92646 0.92588 0.93144 0.92785 0.91550 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.39 37.16 0.35 -2.05 16 2 C 0.10 1.98 2.53 -67.71 -0.17 1.81 16 3 H 0.03 0.73 7.35 -51.93 -0.38 0.34 16 4 C -0.02 -0.44 3.64 -27.88 -0.10 -0.54 16 5 C -0.52 -14.54 8.67 -34.44 -0.30 -14.83 16 6 H 0.07 2.06 7.75 -52.49 -0.41 1.65 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 9 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 13 N -0.68 -13.06 6.22 -99.74 -0.62 -13.68 16 14 C 0.09 1.45 2.53 -67.71 -0.17 1.28 16 15 H 0.05 0.79 7.16 -51.93 -0.37 0.42 16 16 C -0.10 -1.46 5.53 -26.73 -0.15 -1.61 16 17 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 18 C -0.11 -1.26 5.20 -26.73 -0.14 -1.40 16 19 C -0.09 -1.12 2.72 -90.62 -0.25 -1.36 16 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 21 C -0.15 -1.67 9.19 37.16 0.34 -1.33 16 22 C -0.12 -1.89 4.32 -26.73 -0.12 -2.00 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.66 6.69 -51.93 -0.35 0.31 16 26 H 0.02 0.37 7.57 -51.93 -0.39 -0.03 16 27 H 0.02 0.61 7.20 -51.93 -0.37 0.24 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.36 7.63 6.61 -39.29 -0.26 7.37 16 30 H 0.06 0.86 6.68 -51.93 -0.35 0.51 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 304.66 15.07 4.59 4.59 Total: -1.00 -28.70 304.66 -8.42 -37.13 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -7.54 Total: 3.31 kcal Atomic # 6 Polarization: -20.76 SS G_CDS: -0.96 Total: -21.72 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: 0.15 Total: -40.45 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.70 -8.42 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695856886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.714 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds