Wall clock time and date at job start Mon Mar 30 2020 03:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46776 * 2 1 4 4 C 1.53002 * 109.46932 * 240.00219 * 2 1 3 5 5 C 1.50702 * 109.46768 * 175.00120 * 4 2 1 6 6 H 1.07995 * 120.00182 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99831 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00104 * 180.02562 * 7 5 4 9 9 Si 1.86804 * 120.00072 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.46996 * 90.00389 * 9 7 5 11 11 H 1.48499 * 109.47341 * 210.00734 * 9 7 5 12 12 H 1.48503 * 109.46823 * 330.00418 * 9 7 5 13 13 N 1.46899 * 109.47058 * 120.00035 * 2 1 3 14 14 C 1.46893 * 111.00009 * 274.17066 * 13 2 1 15 15 H 1.09000 * 109.47120 * 345.85716 * 14 13 2 16 16 C 1.52998 * 109.47419 * 105.86301 * 14 13 2 17 17 C 1.53007 * 109.46933 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.46750 * 299.99473 * 17 16 14 19 19 C 1.52994 * 109.47260 * 60.00333 * 18 17 16 20 20 H 1.09000 * 109.47131 * 59.99880 * 19 18 17 21 21 C 1.53001 * 109.47082 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47441 * 299.99784 * 19 18 17 23 23 H 1.09003 * 109.46806 * 61.39272 * 1 2 3 24 24 H 1.08997 * 109.46999 * 181.39215 * 1 2 3 25 25 H 1.08997 * 109.47162 * 301.39661 * 1 2 3 26 26 H 1.09003 * 109.47002 * 55.00123 * 4 2 1 27 27 H 1.09000 * 109.46939 * 294.99994 * 4 2 1 28 28 H 0.97000 * 120.00505 * 179.97438 * 8 7 5 29 29 H 1.00894 * 110.99600 * 150.21335 * 13 2 1 30 30 H 1.09004 * 109.46884 * 299.99499 * 16 14 13 31 31 H 1.09000 * 109.47452 * 59.99618 * 16 14 13 32 32 H 1.09005 * 109.46298 * 180.02562 * 17 16 14 33 33 H 1.08998 * 109.47496 * 60.00042 * 17 16 14 34 34 H 1.09000 * 109.47147 * 300.00223 * 18 17 16 35 35 H 1.08999 * 109.47036 * 180.02562 * 18 17 16 36 36 H 1.09005 * 109.47168 * 180.02562 * 21 19 18 37 37 H 1.08999 * 109.47055 * 299.99918 * 21 19 18 38 38 H 1.08998 * 109.47407 * 60.00399 * 21 19 18 39 39 H 1.09000 * 109.47037 * 300.00154 * 22 19 18 40 40 H 1.08996 * 109.47489 * 179.97438 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3127 6 1 4.0790 -0.0855 -0.5396 7 6 4.2304 -1.1926 -2.3584 8 7 5.5411 -1.1002 -2.4135 9 14 3.3015 -2.1076 -3.6960 10 1 2.9399 -1.1624 -4.7827 11 1 4.1602 -3.1878 -4.2448 12 1 2.0659 -2.7002 -3.1238 13 7 2.0197 -0.6925 1.1994 14 6 2.1012 0.2272 2.3419 15 1 2.0228 1.2549 1.9873 16 6 0.9571 -0.0653 3.3147 17 6 1.0417 0.8931 4.5044 18 6 2.3807 0.7015 5.2194 19 6 3.5247 0.9940 4.2466 20 1 3.4462 2.0216 3.8917 21 6 4.8637 0.8029 4.9619 22 6 3.4403 0.0357 3.0570 23 1 -0.3633 0.4921 -0.9022 24 1 -0.3633 -1.0273 0.0250 25 1 -0.3633 0.5354 0.8772 26 1 1.6054 -0.2616 -2.1370 27 1 1.7517 -1.7715 -1.2056 28 1 6.0255 -1.5069 -3.1489 29 1 2.9110 -1.1319 1.0246 30 1 0.0032 0.0716 2.8054 31 1 1.0355 -1.0930 3.6693 32 1 0.2268 0.6843 5.1977 33 1 0.9630 1.9207 4.1495 34 1 2.4593 -0.3261 5.5743 35 1 2.4408 1.3840 6.0672 36 1 5.6789 1.0117 4.2689 37 1 4.9237 1.4860 5.8092 38 1 4.9426 -0.2245 5.3171 39 1 3.5188 -0.9919 3.4119 40 1 4.2551 0.2443 2.3637 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695856886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:06 Heat of formation + Delta-G solvation = -58.782712 kcal Electronic energy + Delta-G solvation = -16299.817069 eV Core-core repulsion = 13918.843425 eV Total energy + Delta-G solvation = -2380.973643 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12250 -37.55659 -34.78457 -33.35095 -32.47872 -29.79860 -28.60264 -27.21143 -24.67671 -23.04003 -21.78031 -21.27222 -20.37228 -18.96400 -16.70619 -16.44966 -16.14146 -15.85308 -15.26669 -15.17292 -14.71442 -14.29470 -13.99824 -13.75893 -13.53663 -13.23131 -13.18482 -12.82889 -12.63102 -12.62306 -12.40734 -12.14530 -12.03664 -11.78651 -11.71136 -11.42937 -11.37149 -11.25094 -10.93429 -10.82556 -10.76009 -9.18445 -8.29596 -6.32860 1.35075 1.37464 1.49643 2.35933 3.03823 3.36015 3.79234 3.84290 4.07440 4.25255 4.28007 4.32984 4.48439 4.53453 4.61172 4.61869 4.70004 4.72238 4.78299 4.90506 4.99213 5.01594 5.08069 5.10616 5.16429 5.18987 5.23111 5.31273 5.40257 5.42408 5.44276 5.50272 5.51604 5.64670 5.67964 6.23577 6.45833 6.62522 6.73702 7.31590 8.86571 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.032045 B = 0.006999 C = 0.005931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.564471 B = 3999.843060 C = 4719.945198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.099 3.901 3 H 0.016 0.984 4 C -0.014 4.014 5 C -0.524 4.524 6 H 0.032 0.968 7 C 0.008 3.992 8 N -0.949 5.949 9 Si 0.949 3.051 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.249 1.249 13 N -0.683 5.683 14 C 0.088 3.912 15 H 0.034 0.966 16 C -0.097 4.097 17 C -0.116 4.116 18 C -0.107 4.107 19 C -0.086 4.086 20 H 0.062 0.938 21 C -0.144 4.144 22 C -0.120 4.120 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.021 0.979 27 H 0.024 0.976 28 H 0.265 0.735 29 H 0.340 0.660 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.181 3.183 13.853 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.011 4.011 3 H 0.034 0.966 4 C -0.051 4.051 5 C -0.562 4.562 6 H 0.050 0.950 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.172 1.172 13 N -0.314 5.314 14 C -0.022 4.022 15 H 0.052 0.948 16 C -0.135 4.135 17 C -0.154 4.154 18 C -0.145 4.145 19 C -0.106 4.106 20 H 0.080 0.920 21 C -0.202 4.202 22 C -0.158 4.158 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.658 2.889 13.915 17.183 hybrid contribution 1.255 0.167 -1.323 1.831 sum -8.404 3.056 12.592 15.444 Atomic orbital electron populations 1.21779 0.93752 1.01904 1.01210 1.21441 0.95502 0.94278 0.89909 0.96578 1.19735 0.94133 0.96617 0.94664 1.21341 0.92114 1.34074 1.08642 0.95003 1.25945 0.95506 0.96840 1.00640 1.70064 1.08478 1.46940 1.33501 0.85671 0.79323 0.78641 0.79049 1.19374 1.21143 1.17223 1.60747 1.34217 1.31786 1.04681 1.21662 0.95385 0.93813 0.91317 0.94782 1.21525 0.97204 0.99666 0.95132 1.21546 0.97857 0.99147 0.96807 1.21564 0.93316 1.02124 0.97459 1.21083 0.96194 0.98443 0.94837 0.91995 1.21809 0.95878 1.02217 1.00277 1.21917 0.96081 1.00432 0.97388 0.92352 0.92455 0.92169 0.96071 0.95800 0.92606 0.84050 0.92182 0.92191 0.90282 0.92318 0.91798 0.90460 0.93904 0.91053 0.92435 0.91707 0.94861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 9.39 71.99 0.68 -3.51 16 2 C 0.10 4.01 2.53 44.92 0.11 4.12 16 3 H 0.02 0.71 7.35 -2.39 -0.02 0.69 16 4 C -0.01 -0.66 3.64 29.85 0.11 -0.55 16 5 C -0.52 -30.04 8.67 25.60 0.22 -29.81 16 6 H 0.03 2.01 7.75 -2.91 -0.02 1.99 16 7 C 0.01 0.45 5.47 84.65 0.46 0.91 16 8 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 9 Si 0.95 44.88 27.47 68.60 1.88 46.76 16 10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 12 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 13 N -0.68 -26.53 6.22 -469.46 -2.92 -29.45 16 14 C 0.09 2.86 2.53 44.92 0.11 2.98 16 15 H 0.03 1.19 7.16 -2.39 -0.02 1.17 16 16 C -0.10 -2.54 5.53 30.60 0.17 -2.37 16 17 C -0.12 -2.37 5.92 30.60 0.18 -2.19 16 18 C -0.11 -2.13 5.20 30.59 0.16 -1.97 16 19 C -0.09 -2.11 2.72 -10.80 -0.03 -2.14 16 20 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.14 -3.16 9.19 71.98 0.66 -2.50 16 22 C -0.12 -3.74 4.32 30.60 0.13 -3.61 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.06 1.73 6.69 -2.39 -0.02 1.72 16 26 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16 27 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 28 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.34 15.17 6.61 -89.70 -0.59 14.58 16 30 H 0.06 1.58 6.68 -2.38 -0.02 1.56 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -62.79 304.66 2.56 -60.23 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.32 Total: 22.45 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 2.97 Total: -40.64 kcal Atomic # 7 Polarization: -86.18 SS G_CDS: -2.62 Total: -88.80 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal Total: -62.79 2.56 -60.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695856886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.446 kcal (2) G-P(sol) polarization free energy of solvation -62.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds