Wall clock time and date at job start Mon Mar 30 2020 03:29:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53009 * 1
3 3 H 1.08999 * 109.46776 * 2 1
4 4 C 1.53002 * 109.46932 * 240.00219 * 2 1 3
5 5 C 1.50702 * 109.46768 * 175.00120 * 4 2 1
6 6 H 1.07995 * 120.00182 * 359.97438 * 5 4 2
7 7 C 1.37877 * 119.99831 * 180.02562 * 5 4 2
8 8 N 1.31512 * 120.00104 * 180.02562 * 7 5 4
9 9 Si 1.86804 * 120.00072 * 359.97438 * 7 5 4
10 10 H 1.48497 * 109.46996 * 90.00389 * 9 7 5
11 11 H 1.48499 * 109.47341 * 210.00734 * 9 7 5
12 12 H 1.48503 * 109.46823 * 330.00418 * 9 7 5
13 13 N 1.46899 * 109.47058 * 120.00035 * 2 1 3
14 14 C 1.46893 * 111.00009 * 274.17066 * 13 2 1
15 15 H 1.09000 * 109.47120 * 345.85716 * 14 13 2
16 16 C 1.52998 * 109.47419 * 105.86301 * 14 13 2
17 17 C 1.53007 * 109.46933 * 180.02562 * 16 14 13
18 18 C 1.52999 * 109.46750 * 299.99473 * 17 16 14
19 19 C 1.52994 * 109.47260 * 60.00333 * 18 17 16
20 20 H 1.09000 * 109.47131 * 59.99880 * 19 18 17
21 21 C 1.53001 * 109.47082 * 179.97438 * 19 18 17
22 22 C 1.52997 * 109.47441 * 299.99784 * 19 18 17
23 23 H 1.09003 * 109.46806 * 61.39272 * 1 2 3
24 24 H 1.08997 * 109.46999 * 181.39215 * 1 2 3
25 25 H 1.08997 * 109.47162 * 301.39661 * 1 2 3
26 26 H 1.09003 * 109.47002 * 55.00123 * 4 2 1
27 27 H 1.09000 * 109.46939 * 294.99994 * 4 2 1
28 28 H 0.97000 * 120.00505 * 179.97438 * 8 7 5
29 29 H 1.00894 * 110.99600 * 150.21335 * 13 2 1
30 30 H 1.09004 * 109.46884 * 299.99499 * 16 14 13
31 31 H 1.09000 * 109.47452 * 59.99618 * 16 14 13
32 32 H 1.09005 * 109.46298 * 180.02562 * 17 16 14
33 33 H 1.08998 * 109.47496 * 60.00042 * 17 16 14
34 34 H 1.09000 * 109.47147 * 300.00223 * 18 17 16
35 35 H 1.08999 * 109.47036 * 180.02562 * 18 17 16
36 36 H 1.09005 * 109.47168 * 180.02562 * 21 19 18
37 37 H 1.08999 * 109.47055 * 299.99918 * 21 19 18
38 38 H 1.08998 * 109.47407 * 60.00399 * 21 19 18
39 39 H 1.09000 * 109.47037 * 300.00154 * 22 19 18
40 40 H 1.08996 * 109.47489 * 179.97438 * 22 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2493
5 6 3.5420 -0.6149 -1.3127
6 1 4.0790 -0.0855 -0.5396
7 6 4.2304 -1.1926 -2.3584
8 7 5.5411 -1.1002 -2.4135
9 14 3.3015 -2.1076 -3.6960
10 1 2.9399 -1.1624 -4.7827
11 1 4.1602 -3.1878 -4.2448
12 1 2.0659 -2.7002 -3.1238
13 7 2.0197 -0.6925 1.1994
14 6 2.1012 0.2272 2.3419
15 1 2.0228 1.2549 1.9873
16 6 0.9571 -0.0653 3.3147
17 6 1.0417 0.8931 4.5044
18 6 2.3807 0.7015 5.2194
19 6 3.5247 0.9940 4.2466
20 1 3.4462 2.0216 3.8917
21 6 4.8637 0.8029 4.9619
22 6 3.4403 0.0357 3.0570
23 1 -0.3633 0.4921 -0.9022
24 1 -0.3633 -1.0273 0.0250
25 1 -0.3633 0.5354 0.8772
26 1 1.6054 -0.2616 -2.1370
27 1 1.7517 -1.7715 -1.2056
28 1 6.0255 -1.5069 -3.1489
29 1 2.9110 -1.1319 1.0246
30 1 0.0032 0.0716 2.8054
31 1 1.0355 -1.0930 3.6693
32 1 0.2268 0.6843 5.1977
33 1 0.9630 1.9207 4.1495
34 1 2.4593 -0.3261 5.5743
35 1 2.4408 1.3840 6.0672
36 1 5.6789 1.0117 4.2689
37 1 4.9237 1.4860 5.8092
38 1 4.9426 -0.2245 5.3171
39 1 3.5188 -0.9919 3.4119
40 1 4.2551 0.2443 2.3637
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000695856886.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:29:06
Heat of formation + Delta-G solvation = -58.782712 kcal
Electronic energy + Delta-G solvation = -16299.817069 eV
Core-core repulsion = 13918.843425 eV
Total energy + Delta-G solvation = -2380.973643 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-40.12250 -37.55659 -34.78457 -33.35095 -32.47872 -29.79860 -28.60264 -27.21143
-24.67671 -23.04003 -21.78031 -21.27222 -20.37228 -18.96400 -16.70619 -16.44966
-16.14146 -15.85308 -15.26669 -15.17292 -14.71442 -14.29470 -13.99824 -13.75893
-13.53663 -13.23131 -13.18482 -12.82889 -12.63102 -12.62306 -12.40734 -12.14530
-12.03664 -11.78651 -11.71136 -11.42937 -11.37149 -11.25094 -10.93429 -10.82556
-10.76009 -9.18445 -8.29596 -6.32860 1.35075 1.37464 1.49643 2.35933
3.03823 3.36015 3.79234 3.84290 4.07440 4.25255 4.28007 4.32984
4.48439 4.53453 4.61172 4.61869 4.70004 4.72238 4.78299 4.90506
4.99213 5.01594 5.08069 5.10616 5.16429 5.18987 5.23111 5.31273
5.40257 5.42408 5.44276 5.50272 5.51604 5.64670 5.67964 6.23577
6.45833 6.62522 6.73702 7.31590 8.86571
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.032045 B = 0.006999 C = 0.005931
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 873.564471 B = 3999.843060 C = 4719.945198
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.099 3.901
3 H 0.016 0.984
4 C -0.014 4.014
5 C -0.524 4.524
6 H 0.032 0.968
7 C 0.008 3.992
8 N -0.949 5.949
9 Si 0.949 3.051
10 H -0.269 1.269
11 H -0.286 1.286
12 H -0.249 1.249
13 N -0.683 5.683
14 C 0.088 3.912
15 H 0.034 0.966
16 C -0.097 4.097
17 C -0.116 4.116
18 C -0.107 4.107
19 C -0.086 4.086
20 H 0.062 0.938
21 C -0.144 4.144
22 C -0.120 4.120
23 H 0.057 0.943
24 H 0.056 0.944
25 H 0.059 0.941
26 H 0.021 0.979
27 H 0.024 0.976
28 H 0.265 0.735
29 H 0.340 0.660
30 H 0.060 0.940
31 H 0.059 0.941
32 H 0.079 0.921
33 H 0.058 0.942
34 H 0.063 0.937
35 H 0.077 0.923
36 H 0.042 0.958
37 H 0.070 0.930
38 H 0.057 0.943
39 H 0.064 0.936
40 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.181 3.183 13.853 16.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.011 4.011
3 H 0.034 0.966
4 C -0.051 4.051
5 C -0.562 4.562
6 H 0.050 0.950
7 C -0.189 4.189
8 N -0.590 5.590
9 Si 0.773 3.227
10 H -0.194 1.194
11 H -0.211 1.211
12 H -0.172 1.172
13 N -0.314 5.314
14 C -0.022 4.022
15 H 0.052 0.948
16 C -0.135 4.135
17 C -0.154 4.154
18 C -0.145 4.145
19 C -0.106 4.106
20 H 0.080 0.920
21 C -0.202 4.202
22 C -0.158 4.158
23 H 0.076 0.924
24 H 0.075 0.925
25 H 0.078 0.922
26 H 0.039 0.961
27 H 0.042 0.958
28 H 0.074 0.926
29 H 0.159 0.841
30 H 0.078 0.922
31 H 0.078 0.922
32 H 0.097 0.903
33 H 0.077 0.923
34 H 0.082 0.918
35 H 0.095 0.905
36 H 0.061 0.939
37 H 0.089 0.911
38 H 0.076 0.924
39 H 0.083 0.917
40 H 0.051 0.949
Dipole moment (debyes) X Y Z Total
from point charges -9.658 2.889 13.915 17.183
hybrid contribution 1.255 0.167 -1.323 1.831
sum -8.404 3.056 12.592 15.444
Atomic orbital electron populations
1.21779 0.93752 1.01904 1.01210 1.21441 0.95502 0.94278 0.89909
0.96578 1.19735 0.94133 0.96617 0.94664 1.21341 0.92114 1.34074
1.08642 0.95003 1.25945 0.95506 0.96840 1.00640 1.70064 1.08478
1.46940 1.33501 0.85671 0.79323 0.78641 0.79049 1.19374 1.21143
1.17223 1.60747 1.34217 1.31786 1.04681 1.21662 0.95385 0.93813
0.91317 0.94782 1.21525 0.97204 0.99666 0.95132 1.21546 0.97857
0.99147 0.96807 1.21564 0.93316 1.02124 0.97459 1.21083 0.96194
0.98443 0.94837 0.91995 1.21809 0.95878 1.02217 1.00277 1.21917
0.96081 1.00432 0.97388 0.92352 0.92455 0.92169 0.96071 0.95800
0.92606 0.84050 0.92182 0.92191 0.90282 0.92318 0.91798 0.90460
0.93904 0.91053 0.92435 0.91707 0.94861
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -4.19 9.39 71.99 0.68 -3.51 16
2 C 0.10 4.01 2.53 44.92 0.11 4.12 16
3 H 0.02 0.71 7.35 -2.39 -0.02 0.69 16
4 C -0.01 -0.66 3.64 29.85 0.11 -0.55 16
5 C -0.52 -30.04 8.67 25.60 0.22 -29.81 16
6 H 0.03 2.01 7.75 -2.91 -0.02 1.99 16
7 C 0.01 0.45 5.47 84.65 0.46 0.91 16
8 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16
9 Si 0.95 44.88 27.47 68.60 1.88 46.76 16
10 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16
11 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16
12 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16
13 N -0.68 -26.53 6.22 -469.46 -2.92 -29.45 16
14 C 0.09 2.86 2.53 44.92 0.11 2.98 16
15 H 0.03 1.19 7.16 -2.39 -0.02 1.17 16
16 C -0.10 -2.54 5.53 30.60 0.17 -2.37 16
17 C -0.12 -2.37 5.92 30.60 0.18 -2.19 16
18 C -0.11 -2.13 5.20 30.59 0.16 -1.97 16
19 C -0.09 -2.11 2.72 -10.80 -0.03 -2.14 16
20 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16
21 C -0.14 -3.16 9.19 71.98 0.66 -2.50 16
22 C -0.12 -3.74 4.32 30.60 0.13 -3.61 16
23 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
24 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16
25 H 0.06 1.73 6.69 -2.39 -0.02 1.72 16
26 H 0.02 0.98 7.57 -2.39 -0.02 0.96 16
27 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16
28 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16
29 H 0.34 15.17 6.61 -89.70 -0.59 14.58 16
30 H 0.06 1.58 6.68 -2.38 -0.02 1.56 16
31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16
32 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16
33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
36 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16
37 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
38 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
39 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16
Total: -1.00 -62.79 304.66 2.56 -60.23
By element:
Atomic # 1 Polarization: 22.12 SS G_CDS: 0.32 Total: 22.45 kcal
Atomic # 6 Polarization: -43.61 SS G_CDS: 2.97 Total: -40.64 kcal
Atomic # 7 Polarization: -86.18 SS G_CDS: -2.62 Total: -88.80 kcal
Atomic # 14 Polarization: 44.88 SS G_CDS: 1.88 Total: 46.76 kcal
Total: -62.79 2.56 -60.23 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000695856886.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.446 kcal
(2) G-P(sol) polarization free energy of solvation -62.786 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.340 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.229 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.783 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds