Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47741 * 2 1 4 4 C 1.53002 * 109.47262 * 120.00165 * 2 1 3 5 5 C 1.50702 * 109.47484 * 184.99727 * 4 2 1 6 6 H 1.07998 * 119.99860 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00109 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00310 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99997 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46766 * 90.00314 * 9 7 5 11 11 H 1.48504 * 109.47228 * 210.00173 * 9 7 5 12 12 H 1.48492 * 109.47076 * 330.00674 * 9 7 5 13 13 N 1.46894 * 109.47256 * 239.99850 * 2 1 3 14 14 C 1.46904 * 110.99965 * 85.00002 * 13 2 1 15 15 C 1.53003 * 109.47271 * 180.02562 * 14 13 2 16 16 H 1.09007 * 110.43010 * 52.46290 * 15 14 13 17 17 C 1.55238 * 110.46855 * 289.81150 * 15 14 13 18 18 C 1.54894 * 102.58338 * 203.39183 * 17 15 14 19 19 C 1.54266 * 104.31305 * 37.93170 * 18 17 15 20 20 H 1.09001 * 110.03084 * 95.60669 * 19 18 17 21 21 C 1.52999 * 110.03121 * 216.98718 * 19 18 17 22 22 C 1.53869 * 106.60031 * 336.32486 * 19 18 17 23 23 H 1.09003 * 109.47173 * 299.99930 * 1 2 3 24 24 H 1.09000 * 109.46941 * 59.99646 * 1 2 3 25 25 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47150 * 304.99779 * 4 2 1 27 27 H 1.09000 * 109.47237 * 64.99321 * 4 2 1 28 28 H 0.96990 * 120.00523 * 179.97438 * 8 7 5 29 29 H 1.00898 * 111.00371 * 208.95651 * 13 2 1 30 30 H 1.08996 * 109.46990 * 60.00438 * 14 13 2 31 31 H 1.08995 * 109.46897 * 300.00092 * 14 13 2 32 32 H 1.08996 * 110.89448 * 85.10747 * 17 15 14 33 33 H 1.08993 * 110.76342 * 321.62413 * 17 15 14 34 34 H 1.09002 * 110.48891 * 279.18596 * 18 17 15 35 35 H 1.08998 * 110.48494 * 156.67683 * 18 17 15 36 36 H 1.08994 * 109.47310 * 58.54872 * 21 19 18 37 37 H 1.09001 * 109.46753 * 178.54919 * 21 19 18 38 38 H 1.09002 * 109.47167 * 298.54559 * 21 19 18 39 39 H 1.08999 * 110.04012 * 119.28327 * 22 19 18 40 40 H 1.09003 * 110.03070 * 240.71854 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0863 0.5392 7 6 4.2303 -1.1928 2.3583 8 7 3.5764 -1.8371 3.3000 9 14 6.0921 -1.0617 2.4366 10 1 6.4709 0.1611 3.1892 11 1 6.6441 -2.2568 3.1238 12 1 6.6413 -0.9850 1.0591 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3469 15 6 2.5951 -0.5332 -3.5745 16 1 2.0071 -1.4364 -3.7381 17 6 4.0983 -0.8831 -3.4079 18 6 4.5695 -1.0532 -4.8736 19 6 3.8078 0.0417 -5.6487 20 1 4.4318 0.9295 -5.7511 21 6 3.4055 -0.4779 -7.0304 22 6 2.5524 0.3724 -4.8227 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6054 -0.2618 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 4.0606 -2.2438 4.0354 29 1 2.9172 -1.1205 -1.0287 30 1 2.7589 1.0461 -2.1182 31 1 1.0871 0.6163 -2.5525 32 1 4.2218 -1.8125 -2.8522 33 1 4.6334 -0.0671 -2.9223 34 1 4.3025 -2.0415 -5.2480 35 1 5.6454 -0.8956 -4.9491 36 1 2.7831 -1.3655 -6.9177 37 1 2.8460 0.2934 -7.5598 38 1 4.3008 -0.7315 -7.5980 39 1 2.5671 1.4206 -4.5241 40 1 1.6557 0.1623 -5.4058 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695860108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = -44.319379 kcal Electronic energy + Delta-G solvation = -15960.794657 eV Core-core repulsion = 13580.448191 eV Total energy + Delta-G solvation = -2380.346466 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.70519 -36.29626 -33.01752 -31.85386 -29.73121 -28.45855 -27.35223 -25.18566 -23.41992 -22.47000 -20.02788 -19.59554 -18.97295 -16.32450 -15.76496 -15.08572 -14.96671 -14.45628 -14.01972 -13.35590 -13.21859 -13.04362 -12.59963 -12.42143 -11.98195 -11.79887 -11.50138 -11.30448 -11.20753 -10.86688 -10.74146 -10.66079 -10.57610 -10.46355 -10.36859 -10.30970 -10.19500 -9.98430 -9.16709 -9.03604 -8.37831 -7.56233 -6.00988 -4.03899 3.30349 3.37156 3.39513 4.44379 4.60518 4.73498 4.79616 5.03147 5.33537 5.35109 5.46027 5.51932 5.58510 5.64024 5.76190 5.85154 5.86774 5.94694 5.98586 6.01414 6.13820 6.16370 6.22014 6.30732 6.32760 6.36731 6.44391 6.54034 6.58171 6.71701 6.97689 7.00043 7.58157 7.66853 7.99225 8.13188 8.35302 8.42018 9.02270 9.60093 11.10002 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025678 B = 0.006722 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.184766 B = 4164.446667 C = 5068.390549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.086 3.914 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.684 5.684 14 C 0.067 3.933 15 C -0.088 4.088 16 H 0.079 0.921 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.097 4.097 20 H 0.066 0.934 21 C -0.143 4.143 22 C -0.115 4.115 23 H 0.047 0.953 24 H 0.035 0.965 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.025 0.975 28 H 0.261 0.739 29 H 0.354 0.646 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.887 3.162 -16.036 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.023 4.023 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.560 4.560 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.318 5.318 14 C -0.063 4.063 15 C -0.106 4.106 16 H 0.098 0.902 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.116 4.116 20 H 0.085 0.915 21 C -0.201 4.201 22 C -0.153 4.153 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.175 0.825 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.480 2.810 -16.032 16.343 hybrid contribution 1.844 0.653 0.406 1.998 sum 0.365 3.464 -15.625 16.009 Atomic orbital electron populations 1.21787 0.96850 1.01243 0.99358 1.21600 0.93290 0.95815 0.91605 0.95507 1.19283 0.95396 0.96188 0.90869 1.21169 0.92247 1.34393 1.08222 0.93069 1.24981 0.98168 0.95205 0.95725 1.69958 1.35476 1.35654 1.11950 0.86652 0.86016 0.77522 0.78163 1.20774 1.21189 1.19890 1.60567 1.34706 1.32151 1.04365 1.21969 0.99203 0.93982 0.91141 1.22056 0.96167 0.98710 0.93708 0.90218 1.22635 0.95537 1.01985 0.95896 1.22433 0.99177 0.98450 0.95659 1.21735 0.96732 0.98345 0.94788 0.91522 1.21880 1.00908 1.00903 0.96362 1.22250 0.97300 0.99698 0.96060 0.93441 0.94571 0.92697 0.96143 0.95617 0.92973 0.82506 0.96068 0.92213 0.91011 0.91665 0.91720 0.92205 0.92603 0.93036 0.93071 0.92071 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 9.41 37.16 0.35 -2.15 16 2 C 0.09 1.85 2.59 -67.72 -0.18 1.67 16 3 H 0.03 0.59 7.80 -51.93 -0.40 0.19 16 4 C 0.02 0.52 4.57 -27.88 -0.13 0.39 16 5 C -0.52 -14.47 8.12 -34.44 -0.28 -14.75 16 6 H 0.05 1.38 7.49 -52.49 -0.39 0.99 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.68 -13.46 6.31 -106.73 -0.67 -14.14 16 14 C 0.07 1.10 4.82 -3.82 -0.02 1.08 16 15 C -0.09 -1.23 3.10 -88.77 -0.27 -1.50 16 16 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 17 C -0.12 -1.73 5.72 -24.55 -0.14 -1.87 16 18 C -0.12 -1.40 6.35 -25.07 -0.16 -1.56 16 19 C -0.10 -1.05 3.50 -89.51 -0.31 -1.37 16 20 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 21 C -0.14 -1.32 8.84 37.16 0.33 -1.00 16 22 C -0.11 -1.35 6.03 -25.62 -0.15 -1.50 16 23 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.04 0.60 7.45 -51.93 -0.39 0.21 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.35 7.54 6.50 -39.29 -0.26 7.28 16 30 H 0.02 0.36 7.94 -51.93 -0.41 -0.05 16 31 H 0.06 0.94 7.43 -51.93 -0.39 0.56 16 32 H 0.07 1.08 8.05 -51.93 -0.42 0.66 16 33 H 0.06 0.98 7.97 -51.93 -0.41 0.56 16 34 H 0.06 0.73 7.85 -51.93 -0.41 0.32 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.72 7.84 -51.93 -0.41 0.31 16 40 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 LS Contribution 312.69 15.07 4.71 4.71 Total: -1.00 -28.56 312.69 -8.95 -37.51 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.65 Total: 2.26 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -1.06 Total: -20.92 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.06 Total: -40.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.56 -8.95 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.806 kcal (2) G-P(sol) polarization free energy of solvation -28.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds