Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47741 * 2 1 4 4 C 1.53002 * 109.47262 * 120.00165 * 2 1 3 5 5 C 1.50702 * 109.47484 * 184.99727 * 4 2 1 6 6 H 1.07998 * 119.99860 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00109 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00310 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99997 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46766 * 90.00314 * 9 7 5 11 11 H 1.48504 * 109.47228 * 210.00173 * 9 7 5 12 12 H 1.48492 * 109.47076 * 330.00674 * 9 7 5 13 13 N 1.46894 * 109.47256 * 239.99850 * 2 1 3 14 14 C 1.46904 * 110.99965 * 85.00002 * 13 2 1 15 15 C 1.53003 * 109.47271 * 180.02562 * 14 13 2 16 16 H 1.09007 * 110.43010 * 52.46290 * 15 14 13 17 17 C 1.55238 * 110.46855 * 289.81150 * 15 14 13 18 18 C 1.54894 * 102.58338 * 203.39183 * 17 15 14 19 19 C 1.54266 * 104.31305 * 37.93170 * 18 17 15 20 20 H 1.09001 * 110.03084 * 95.60669 * 19 18 17 21 21 C 1.52999 * 110.03121 * 216.98718 * 19 18 17 22 22 C 1.53869 * 106.60031 * 336.32486 * 19 18 17 23 23 H 1.09003 * 109.47173 * 299.99930 * 1 2 3 24 24 H 1.09000 * 109.46941 * 59.99646 * 1 2 3 25 25 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47150 * 304.99779 * 4 2 1 27 27 H 1.09000 * 109.47237 * 64.99321 * 4 2 1 28 28 H 0.96990 * 120.00523 * 179.97438 * 8 7 5 29 29 H 1.00898 * 111.00371 * 208.95651 * 13 2 1 30 30 H 1.08996 * 109.46990 * 60.00438 * 14 13 2 31 31 H 1.08995 * 109.46897 * 300.00092 * 14 13 2 32 32 H 1.08996 * 110.89448 * 85.10747 * 17 15 14 33 33 H 1.08993 * 110.76342 * 321.62413 * 17 15 14 34 34 H 1.09002 * 110.48891 * 279.18596 * 18 17 15 35 35 H 1.08998 * 110.48494 * 156.67683 * 18 17 15 36 36 H 1.08994 * 109.47310 * 58.54872 * 21 19 18 37 37 H 1.09001 * 109.46753 * 178.54919 * 21 19 18 38 38 H 1.09002 * 109.47167 * 298.54559 * 21 19 18 39 39 H 1.08999 * 110.04012 * 119.28327 * 22 19 18 40 40 H 1.09003 * 110.03070 * 240.71854 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 1 4.0790 -0.0863 0.5392 7 6 4.2303 -1.1928 2.3583 8 7 3.5764 -1.8371 3.3000 9 14 6.0921 -1.0617 2.4366 10 1 6.4709 0.1611 3.1892 11 1 6.6441 -2.2568 3.1238 12 1 6.6413 -0.9850 1.0591 13 7 2.0196 -0.6925 -1.1994 14 6 2.0824 0.2226 -2.3469 15 6 2.5951 -0.5332 -3.5745 16 1 2.0071 -1.4364 -3.7381 17 6 4.0983 -0.8831 -3.4079 18 6 4.5695 -1.0532 -4.8736 19 6 3.8078 0.0417 -5.6487 20 1 4.4318 0.9295 -5.7511 21 6 3.4055 -0.4779 -7.0304 22 6 2.5524 0.3724 -4.8227 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6054 -0.2618 2.1370 27 1 1.7516 -1.7715 1.2056 28 1 4.0606 -2.2438 4.0354 29 1 2.9172 -1.1205 -1.0287 30 1 2.7589 1.0461 -2.1182 31 1 1.0871 0.6163 -2.5525 32 1 4.2218 -1.8125 -2.8522 33 1 4.6334 -0.0671 -2.9223 34 1 4.3025 -2.0415 -5.2480 35 1 5.6454 -0.8956 -4.9491 36 1 2.7831 -1.3655 -6.9177 37 1 2.8460 0.2934 -7.5598 38 1 4.3008 -0.7315 -7.5980 39 1 2.5671 1.4206 -4.5241 40 1 1.6557 0.1623 -5.4058 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695860108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = -60.196107 kcal Electronic energy + Delta-G solvation = -15961.483123 eV Core-core repulsion = 13580.448191 eV Total energy + Delta-G solvation = -2381.034933 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80095 -37.88316 -34.92160 -33.33437 -30.93137 -29.66118 -29.28213 -26.26207 -25.12761 -23.97415 -21.18139 -21.07942 -20.13933 -18.51763 -17.05226 -16.57009 -16.33453 -16.10414 -15.40241 -14.79092 -14.32923 -14.18322 -13.84075 -13.76930 -13.48250 -13.34859 -13.22921 -12.85955 -12.67481 -12.58847 -12.37120 -12.12218 -11.84970 -11.56309 -11.54881 -11.52574 -11.37663 -11.18112 -11.12118 -10.95355 -10.58211 -9.16815 -8.20099 -6.30718 1.38418 1.38968 1.49788 2.39265 3.11308 3.42209 3.71333 3.80180 3.90020 4.27621 4.34616 4.41355 4.58862 4.59636 4.62456 4.66291 4.70467 4.76191 4.81907 4.87830 4.95404 5.00402 5.06647 5.14817 5.19327 5.21437 5.25430 5.33221 5.36717 5.39497 5.49609 5.51609 5.61275 5.62824 5.83369 6.20464 6.45052 6.67892 6.84077 7.37985 8.91643 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.025678 B = 0.006722 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.184766 B = 4164.446667 C = 5068.390549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.093 3.907 3 H 0.021 0.979 4 C 0.027 3.973 5 C -0.533 4.533 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.282 1.282 12 H -0.263 1.263 13 N -0.686 5.686 14 C 0.069 3.931 15 C -0.083 4.083 16 H 0.075 0.925 17 C -0.127 4.127 18 C -0.115 4.115 19 C -0.095 4.095 20 H 0.071 0.929 21 C -0.140 4.140 22 C -0.110 4.110 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.049 0.951 26 H -0.005 1.005 27 H -0.003 1.003 28 H 0.263 0.737 29 H 0.342 0.658 30 H 0.014 0.986 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 3.881 -18.033 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.017 4.017 3 H 0.039 0.961 4 C -0.010 4.010 5 C -0.571 4.571 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.187 1.187 13 N -0.319 5.319 14 C -0.060 4.060 15 C -0.102 4.102 16 H 0.093 0.907 17 C -0.165 4.165 18 C -0.153 4.153 19 C -0.114 4.114 20 H 0.089 0.911 21 C -0.198 4.198 22 C -0.148 4.148 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.068 0.932 26 H 0.013 0.987 27 H 0.016 0.984 28 H 0.072 0.928 29 H 0.161 0.839 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.898 3.543 -18.050 18.416 hybrid contribution 1.627 0.427 1.048 1.982 sum 0.729 3.969 -17.002 17.475 Atomic orbital electron populations 1.21699 0.94450 1.01410 1.00889 1.21440 0.95198 0.94663 0.90376 0.96115 1.19146 0.94914 0.94716 0.92271 1.21483 0.93225 1.34151 1.08267 0.92713 1.25876 1.03323 0.94758 0.95307 1.70089 1.37566 1.36657 1.12690 0.85541 0.79814 0.77648 0.78626 1.20066 1.20777 1.18750 1.60628 1.33905 1.32798 1.04523 1.22056 0.99810 0.93447 0.90724 1.22002 0.95731 0.98764 0.93689 0.90664 1.22620 0.95799 1.00624 0.97435 1.22417 0.99742 0.99244 0.93862 1.21729 0.96096 0.98179 0.95379 0.91060 1.21852 1.01423 1.01102 0.95374 1.22225 0.98466 0.99086 0.95022 0.92929 0.92009 0.93199 0.98715 0.98447 0.92798 0.83876 0.96799 0.91095 0.92680 0.92948 0.91175 0.91556 0.92695 0.92057 0.92253 0.91950 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.41 71.98 0.68 -3.91 16 2 C 0.09 4.00 2.59 44.92 0.12 4.11 16 3 H 0.02 0.92 7.80 -2.39 -0.02 0.90 16 4 C 0.03 1.44 4.57 29.85 0.14 1.58 16 5 C -0.53 -30.06 8.12 25.60 0.21 -29.85 16 6 H 0.05 2.98 7.49 -2.91 -0.02 2.96 16 7 C 0.01 0.32 5.46 84.65 0.46 0.78 16 8 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 9 Si 0.96 44.34 29.54 68.60 2.03 46.36 16 10 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 N -0.69 -26.98 6.31 -491.59 -3.10 -30.08 16 14 C 0.07 2.19 4.82 86.30 0.42 2.60 16 15 C -0.08 -2.22 3.10 -9.60 -0.03 -2.25 16 16 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 17 C -0.13 -3.51 5.72 32.01 0.18 -3.32 16 18 C -0.12 -2.49 6.35 31.67 0.20 -2.29 16 19 C -0.10 -1.82 3.50 -10.07 -0.04 -1.85 16 20 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 21 C -0.14 -2.17 8.84 71.98 0.64 -1.54 16 22 C -0.11 -2.32 6.03 31.32 0.19 -2.13 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.06 1.92 7.45 -2.39 -0.02 1.90 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 27 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 28 H 0.26 15.11 8.31 -92.72 -0.77 14.34 16 29 H 0.34 14.82 6.50 -89.70 -0.58 14.23 16 30 H 0.01 0.46 7.94 -2.39 -0.02 0.45 16 31 H 0.07 2.09 7.43 -2.39 -0.02 2.08 16 32 H 0.05 1.67 8.05 -2.39 -0.02 1.65 16 33 H 0.05 1.56 7.97 -2.39 -0.02 1.54 16 34 H 0.07 1.44 7.85 -2.39 -0.02 1.42 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 1.31 7.84 -2.39 -0.02 1.29 16 40 H 0.07 1.41 7.67 -2.39 -0.02 1.39 16 Total: -1.00 -61.24 312.69 2.75 -58.49 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.38 Total: 19.74 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.16 Total: -38.07 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -2.82 Total: -86.52 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -61.24 2.75 -58.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.710 kcal (2) G-P(sol) polarization free energy of solvation -61.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds