Wall clock time and date at job start Mon Mar 30 2020 03:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50698 * 109.47721 * 175.00208 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47239 * 89.99935 * 9 7 5 11 11 H 1.48495 * 109.47323 * 209.99675 * 9 7 5 12 12 H 1.48505 * 109.47112 * 330.00112 * 9 7 5 13 13 N 1.46896 * 109.47053 * 120.00246 * 2 1 3 14 14 C 1.46903 * 110.99908 * 274.99684 * 13 2 1 15 15 C 1.52996 * 109.47400 * 179.97438 * 14 13 2 16 16 H 1.09006 * 110.01569 * 54.29831 * 15 14 13 17 17 C 1.54271 * 110.03523 * 292.90810 * 15 14 13 18 18 C 1.54885 * 104.19784 * 217.10459 * 17 15 14 19 19 C 1.54885 * 102.74832 * 37.93923 * 18 17 15 20 20 C 1.53877 * 110.03570 * 175.68803 * 15 14 13 21 21 H 1.08997 * 110.03605 * 238.56764 * 20 15 14 22 22 C 1.52999 * 110.03022 * 0.02562 * 20 15 14 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 25 25 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47325 * 295.00173 * 4 2 1 27 27 H 1.09008 * 109.47017 * 55.00082 * 4 2 1 28 28 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 29 29 H 1.00895 * 111.00219 * 151.04779 * 13 2 1 30 30 H 1.09003 * 109.46856 * 300.00136 * 14 13 2 31 31 H 1.09001 * 109.47072 * 60.00127 * 14 13 2 32 32 H 1.08996 * 110.48001 * 335.78491 * 17 15 14 33 33 H 1.08997 * 110.48395 * 98.42101 * 17 15 14 34 34 H 1.08996 * 110.75380 * 156.25190 * 18 17 15 35 35 H 1.09001 * 110.75678 * 279.62681 * 18 17 15 36 36 H 1.09005 * 110.48515 * 80.73586 * 19 18 17 37 37 H 1.09006 * 110.48947 * 203.37652 * 19 18 17 38 38 H 1.09001 * 109.47079 * 59.99623 * 22 20 15 39 39 H 1.08993 * 109.47204 * 179.97438 * 22 20 15 40 40 H 1.09005 * 109.47096 * 299.99531 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6151 -1.3128 6 1 4.0790 -0.0863 -0.5392 7 6 4.2303 -1.1928 -2.3583 8 7 3.5762 -1.8371 -3.3000 9 14 6.0919 -1.0605 -2.4374 10 1 6.7008 -2.2131 -1.7260 11 1 6.5288 -1.0679 -3.8566 12 1 6.5261 0.2048 -1.7924 13 7 2.0196 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5950 -0.5332 3.5744 16 1 3.5450 -1.0162 3.3455 17 6 1.5592 -1.5875 4.0166 18 6 1.6321 -1.5662 5.5636 19 6 1.8299 -0.0621 5.8758 20 6 2.7684 0.4369 4.7563 21 1 3.8022 0.4240 5.1015 22 6 2.3733 1.8534 4.3339 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.7516 -1.7715 -1.2056 27 1 1.6053 -0.2617 -2.1370 28 1 4.0606 -2.2439 -4.0354 29 1 2.9172 -1.1205 1.0287 30 1 2.7589 1.0461 2.1181 31 1 1.0871 0.6163 2.5525 32 1 0.5617 -1.3076 3.6778 33 1 1.8303 -2.5719 3.6353 34 1 0.7024 -1.9322 5.9991 35 1 2.4820 -2.1493 5.9183 36 1 0.8760 0.4641 5.8373 37 1 2.2985 0.0666 6.8515 38 1 1.3311 1.8600 4.0148 39 1 2.4990 2.5323 5.1772 40 1 3.0080 2.1768 3.5089 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695860498.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:36 Heat of formation + Delta-G solvation = -37.863485 kcal Electronic energy + Delta-G solvation = -16151.731224 eV Core-core repulsion = 13771.664706 eV Total energy + Delta-G solvation = -2380.066518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.96648 -36.15365 -32.79221 -31.47238 -30.84327 -27.84427 -27.35485 -24.90489 -23.63127 -22.51158 -20.58694 -19.40497 -18.31770 -16.32791 -16.07944 -15.12722 -14.49108 -14.44131 -14.25550 -13.66424 -13.42370 -12.88292 -12.53767 -12.14004 -11.77799 -11.69221 -11.50714 -11.26603 -11.15115 -10.86224 -10.76262 -10.66818 -10.60800 -10.49933 -10.41174 -10.22514 -10.13019 -9.90876 -9.16215 -9.03169 -8.37795 -7.51557 -6.01087 -4.03893 3.30290 3.37010 3.39478 4.44332 4.64818 4.71525 4.81919 5.12785 5.35984 5.39884 5.48262 5.51679 5.60866 5.71093 5.76903 5.82940 5.90482 5.97934 6.02716 6.07168 6.15297 6.16668 6.23344 6.32931 6.34254 6.44949 6.49704 6.54604 6.61276 6.72974 6.97910 7.00475 7.58687 7.67029 7.99367 8.14300 8.35344 8.42174 9.02338 9.60086 11.09878 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029396 B = 0.006410 C = 0.005910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 952.289282 B = 4366.861233 C = 4736.984961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.088 3.912 3 H 0.026 0.974 4 C 0.020 3.980 5 C -0.522 4.522 6 H 0.051 0.949 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.684 5.684 14 C 0.066 3.934 15 C -0.087 4.087 16 H 0.068 0.932 17 C -0.103 4.103 18 C -0.129 4.129 19 C -0.118 4.118 20 C -0.092 4.092 21 H 0.066 0.934 22 C -0.148 4.148 23 H 0.035 0.965 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.260 0.740 29 H 0.352 0.648 30 H 0.024 0.976 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.445 3.624 15.561 16.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.022 4.022 3 H 0.044 0.956 4 C -0.017 4.017 5 C -0.560 4.560 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.317 5.317 14 C -0.064 4.064 15 C -0.106 4.106 16 H 0.087 0.913 17 C -0.141 4.141 18 C -0.167 4.167 19 C -0.156 4.156 20 C -0.111 4.111 21 H 0.085 0.915 22 C -0.205 4.205 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.172 0.828 30 H 0.042 0.958 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.035 3.284 15.541 16.389 hybrid contribution 1.896 0.610 -0.410 2.033 sum -2.140 3.894 15.131 15.770 Atomic orbital electron populations 1.21784 0.96907 1.01206 0.99298 1.21580 0.93224 0.95762 0.91602 0.95572 1.19277 0.95351 0.96182 0.90886 1.21173 0.92275 1.34380 1.08196 0.93084 1.24985 0.98180 0.95251 0.95715 1.69967 1.35433 1.35671 1.11972 0.86646 0.86056 0.78383 0.77212 1.20617 1.21232 1.20051 1.60545 1.34552 1.32291 1.04330 1.22184 0.99404 0.93911 0.90891 1.21795 0.99117 0.95614 0.94067 0.91345 1.22247 0.99378 0.98980 0.93447 1.22540 1.00928 0.96047 0.97174 1.22453 0.99327 0.96151 0.97664 1.21772 0.99118 0.95042 0.95169 0.91504 1.21970 1.01840 0.95855 1.00806 0.94627 0.93496 0.92715 0.95631 0.96191 0.92984 0.82758 0.95801 0.91873 0.91424 0.91636 0.92096 0.91974 0.91769 0.92379 0.92324 0.93491 0.92264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.41 37.16 0.35 -2.12 16 2 C 0.09 1.86 2.59 -67.72 -0.18 1.68 16 3 H 0.03 0.57 7.80 -51.93 -0.40 0.17 16 4 C 0.02 0.53 4.57 -27.89 -0.13 0.40 16 5 C -0.52 -14.47 8.12 -34.44 -0.28 -14.75 16 6 H 0.05 1.38 7.49 -52.48 -0.39 0.99 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -13.23 6.11 -106.73 -0.65 -13.89 16 14 C 0.07 1.05 3.58 -3.82 -0.01 1.04 16 15 C -0.09 -1.21 3.09 -89.50 -0.28 -1.49 16 16 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 17 C -0.10 -1.36 6.17 -25.07 -0.15 -1.52 16 18 C -0.13 -1.42 6.91 -24.74 -0.17 -1.59 16 19 C -0.12 -1.25 6.36 -25.02 -0.16 -1.41 16 20 C -0.09 -1.09 3.51 -89.44 -0.31 -1.40 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 22 C -0.15 -1.69 7.89 37.16 0.29 -1.40 16 23 H 0.03 0.58 7.45 -51.93 -0.39 0.20 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.02 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 29 H 0.35 7.46 7.21 -39.29 -0.28 7.17 16 30 H 0.02 0.40 6.38 -51.93 -0.33 0.07 16 31 H 0.06 0.99 6.18 -51.93 -0.32 0.67 16 32 H 0.07 0.95 7.77 -51.93 -0.40 0.54 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.66 7.84 -51.93 -0.41 0.26 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.68 6.84 -51.93 -0.35 0.33 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.73 6.63 -51.93 -0.34 0.38 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -28.48 307.38 -8.85 -37.33 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.42 Total: 2.26 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: -1.13 Total: -20.93 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.08 Total: -39.84 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.48 -8.85 -37.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860498.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.536 kcal (2) G-P(sol) polarization free energy of solvation -28.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds